Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 6.3e-114 414.1 202 100.0
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 5.3e-105 384.4 202 91.6
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 4.5e-104 381.3 202 89.6
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.9e-103 378.6 200 89.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 6.5e-103 377.5 200 90.0
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 6.5e-103 377.5 200 90.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 6.5e-103 377.5 202 88.6
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-102 376.3 202 91.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.9e-102 375.9 202 88.1
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 4.2e-102 374.8 202 88.1
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.2e-102 374.8 202 90.6
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-100 369.8 202 89.6
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.4e-100 369.8 202 89.6
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.4e-100 369.8 219 82.6
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.6e-99 365.5 193 91.2
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.6e-99 365.5 202 86.1
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 2.8e-98 362.1 193 89.1
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-96 356.7 194 88.1
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.0e-95 353.6 193 87.6
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 3.2e-94 348.6 194 86.6
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.4e-92 343.2 202 81.7
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 5.9e-80 301.2 202 68.3
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.9e-78 296.2 202 68.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.9e-78 296.2 202 68.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.3e-78 295.4 202 69.8
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 7.2e-78 294.3 202 67.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 4.7e-77 291.6 202 68.3
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.7e-75 284.6 199 67.8
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 5.7e-75 284.6 199 67.8
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.7e-74 283.1 197 67.5
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.7e-74 282.0 154 89.0
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.3e-74 281.2 199 66.8
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.8e-73 279.6 193 67.4
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 3.5e-72 275.4 203 64.5
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.5e-72 275.4 201 66.7
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.5e-72 275.0 203 66.5
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 7.8e-72 274.2 202 64.9
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.3e-71 273.5 203 65.0
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 1.3e-71 273.5 202 64.9
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-71 273.5 203 66.0
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.3e-71 272.7 203 64.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 5.0e-71 271.6 203 65.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 5.0e-71 271.6 203 65.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 6.6e-71 271.2 202 65.3
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 8.6e-71 270.8 202 63.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.9e-70 269.6 203 63.1
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.3e-70 268.9 205 63.4
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.3e-70 268.9 203 63.5
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 3.3e-70 268.9 267 52.4
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 7.3e-70 267.7 203 64.0
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 7.3e-70 267.7 203 62.6
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 9.5e-70 267.3 203 65.5
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 3.6e-69 265.4 186 67.7
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 4.7e-69 265.0 202 63.4
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.8e-68 263.1 203 62.6
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.8e-68 261.2 203 61.1
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 5.8e-67 258.1 201 63.2
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.7e-66 256.5 193 63.2
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 6.4e-66 254.6 200 60.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.3e-66 254.2 200 58.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.9e-65 253.1 200 59.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.9e-65 253.1 200 60.0
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 9.2e-65 250.8 200 58.0
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.0e-64 249.6 203 61.1
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 3.5e-64 248.8 199 60.8
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 4.6e-64 248.4 199 56.8
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 5.0e-63 245.0 194 58.8
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 8.6e-63 244.2 202 56.4
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.1e-62 243.8 202 57.9
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 3.3e-62 242.3 202 57.4
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 7.3e-62 241.1 202 56.9
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.2e-61 240.4 201 56.2
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.1e-61 239.6 194 57.2
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.6e-61 238.8 194 57.2
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 6.2e-61 238.0 202 56.9
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.1e-60 237.3 203 58.1
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.8e-60 236.5 202 56.4
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.5e-59 231.1 202 54.5
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.5e-59 231.1 202 54.5
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 9.8e-59 230.7 202 55.4
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 1.3e-58 230.3 199 54.8
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.2e-58 229.6 198 54.5
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 3.7e-58 228.8 200 56.0
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 6.4e-58 228.0 202 55.0
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.3e-58 227.6 202 54.0
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 1.9e-57 226.5 203 56.7
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 4.1e-57 225.3 203 54.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 9.2e-57 224.2 198 50.5
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.2e-56 223.8 192 57.8
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 2.1e-56 223.0 229 50.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 7.8e-56 221.1 198 51.5
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.3e-55 220.3 146 70.5
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.3e-55 219.5 229 49.3
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 3.0e-55 219.2 192 56.8
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 8.6e-55 217.6 202 56.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.5e-54 216.1 235 48.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.3e-54 215.7 198 51.0
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 3.3e-54 215.7 229 49.8
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 3.3e-54 215.7 250 46.0
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 9.5e-54 214.2 228 49.6
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.6e-53 213.4 232 47.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 3.1e-52 209.1 192 53.1
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.0e-52 208.8 111 89.2
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 8.9e-52 207.6 172 55.8
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.2e-50 203.0 235 47.2
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.4e-49 200.3 235 46.8
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.4e-49 199.5 151 61.6
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 5.4e-49 198.4 207 49.3
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 7.1e-49 198.0 232 46.1
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 9.2e-49 197.6 175 52.6
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 9.2e-49 197.6 233 45.9
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.6e-48 196.8 232 45.7
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.0e-48 194.9 226 46.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.3e-47 193.7 146 63.0
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 3.3e-46 189.1 183 51.4
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.6e-45 185.7 199 41.7
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.4e-44 183.0 209 47.4
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.5e-43 180.3 137 62.0
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 7.6e-43 177.9 147 56.5
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.7e-42 176.8 193 42.0
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 4.9e-42 175.3 193 48.2
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.4e-41 173.7 196 50.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 6.6e-39 164.9 199 43.7
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 8.7e-39 164.5 203 40.9
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 8.7e-39 164.5 203 40.9
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 2.5e-38 162.9 157 54.1
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.3e-38 162.5 116 65.5
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 6.2e-37 158.3 111 66.7
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.1e-36 157.5 200 42.5
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.4e-36 157.1 200 44.0
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.4e-36 157.1 198 41.4
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 6.9e-36 154.8 153 48.4
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 6.9e-36 154.8 178 48.9
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.7e-34 150.2 190 44.7
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.9e-33 146.7 204 35.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.2e-32 144.1 199 36.2
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.6e-32 142.1 193 40.4
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 6.0e-32 141.7 120 55.0
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.1e-30 137.5 122 50.8
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 9.6e-30 134.4 199 35.7
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.8e-29 132.9 86 69.8
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.6e-29 132.5 202 37.1
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 9.0e-28 127.9 115 57.4
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 2.0e-27 126.7 82 75.6
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 2.2e-26 123.2 152 44.1
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 5.4e-25 118.6 116 50.0
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 5.1e-23 112.1 122 45.1
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 3.3e-22 109.4 200 37.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 9.0e-20 101.3 128 46.1
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.2e-16 90.9 207 29.0
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.8e-13 79.7 58 65.5
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.8e-13 79.7 60 61.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.4e-12 77.4 208 27.4
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 5.0e-10 68.9 70 45.7
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 9.7e-06 54.7 203 25.6
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 9.7e-06 54.7 49 42.9


User provided reference genes

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