Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 2.1e-61 238.8 118 100.0
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 8.7e-23 110.5 81 75.3
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 4.3e-22 108.2 83 71.1
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 4.3e-22 108.2 83 71.1
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 7.3e-22 107.5 82 73.2
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.6e-21 106.3 83 68.7
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 2.1e-21 105.9 81 72.8
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 2.1e-21 105.9 81 72.8
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 2.1e-21 105.9 81 72.8
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 2.1e-21 105.9 81 72.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 4.8e-21 104.8 83 68.7
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 8.1e-21 104.0 83 68.7
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 3.4e-19 98.6 81 67.9
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 4.5e-19 98.2 81 66.7
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.8e-15 86.3 76 59.2
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 2.3e-15 85.9 71 64.8
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 2.3e-15 85.9 76 60.5
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 3.0e-15 85.5 71 64.8
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.0e-15 85.5 71 64.8
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 3.0e-15 85.5 71 64.8
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.9e-15 85.1 71 62.0
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 3.9e-15 85.1 71 62.0
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 3.9e-15 85.1 71 66.2
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 5.1e-15 84.7 71 62.0
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 8.7e-15 84.0 68 66.2
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.1e-14 83.6 76 59.2
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.1e-14 83.6 76 59.2
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 1.1e-14 83.6 71 63.4
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.1e-14 83.6 76 59.2
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.9e-14 82.8 78 57.7
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 2.5e-14 82.4 71 63.4
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 3.3e-14 82.0 76 59.2
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 3.3e-14 82.0 71 62.0
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 4.3e-14 81.6 77 57.1
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 4.3e-14 81.6 76 59.2
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 5.6e-14 81.3 68 63.2
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.6e-14 81.3 76 57.9
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 7.4e-14 80.9 71 60.6
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.4e-14 80.9 76 56.6
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 1.6e-13 79.7 77 57.1
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.6e-13 79.7 71 59.2
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 2.1e-13 79.3 76 55.3
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 2.1e-13 79.3 71 62.0
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 2.1e-13 79.3 71 59.2
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.1e-13 79.3 71 59.2
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 2.8e-13 79.0 71 60.6
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.8e-13 79.0 71 57.7
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.8e-13 79.0 71 57.7
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 2.8e-13 79.0 76 51.3
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 2.8e-13 79.0 77 55.8
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 3.7e-13 78.6 72 61.1
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.8e-13 78.2 76 51.3
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 4.8e-13 78.2 71 57.7
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 6.2e-13 77.8 68 61.8
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.1e-12 77.0 78 48.7
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.4e-12 76.6 71 59.2
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.4e-12 76.6 71 59.2
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.8e-12 76.3 81 51.9
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 2.4e-12 75.9 71 54.9
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 4.0e-12 75.1 71 56.3
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 5.3e-12 74.7 71 57.7
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 5.3e-12 74.7 71 57.7
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 9.0e-12 73.9 75 56.0
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 9.0e-12 73.9 76 53.9
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.2e-11 73.6 68 52.9
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 1.5e-11 73.2 80 52.5
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.5e-11 73.2 80 52.5
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.5e-11 73.2 82 53.7
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.5e-11 73.2 71 54.9
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 1.5e-11 73.2 71 56.3
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 2.0e-11 72.8 73 50.7
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 3.4e-11 72.0 71 53.5
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 4.5e-11 71.6 72 55.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 4.5e-11 71.6 75 50.7
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 4.5e-11 71.6 106 39.6
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 5.8e-11 71.2 76 50.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 5.8e-11 71.2 77 51.9
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 7.6e-11 70.9 68 55.9
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 7.6e-11 70.9 76 51.3
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 9.9e-11 70.5 68 57.4
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.3e-10 70.1 68 51.5
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 1.3e-10 70.1 71 54.9
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.7e-10 69.7 68 52.9
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.2e-10 69.3 82 46.3
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 2.2e-10 69.3 76 47.4
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 2.2e-10 69.3 80 51.2
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 4.9e-10 68.2 71 49.3
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 4.9e-10 68.2 76 50.0
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 8.4e-10 67.4 71 50.7
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 8.4e-10 67.4 71 50.7
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.4e-09 66.6 71 49.3
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 2.4e-09 65.9 76 50.0
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 5.5e-09 64.7 70 51.4
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 5.5e-09 64.7 68 55.9
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 5.5e-09 64.7 71 49.3
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 9.3e-09 63.9 75 49.3
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 1.2e-08 63.5 75 48.0
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 2.7e-08 62.4 78 44.9
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 3.5e-08 62.0 71 50.7
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 4.6e-08 61.6 74 45.9
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 2.3e-07 59.3 68 48.5
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 8.7e-07 57.4 81 49.4


User provided reference genes

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