Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24949 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-42 176.0 85 100.0
C02p33860 Brassica napus HOM05D002484 ORTHO05D002541 3.4e-29 131.3 84 78.6
BolC2t09321H Brassica oleracea HOM05D002484 ORTHO05D002541 7.6e-29 130.2 84 77.4
BcaC03g15604 Brassica carinata HOM05D002484 ORTHO05D002541 2.4e-27 125.2 90 73.3
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 4.2e-19 97.8 82 63.4
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 1.2e-18 96.3 82 62.2
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 3.5e-18 94.7 82 62.2
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 3.5e-18 94.7 82 62.2
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 3.5e-18 94.7 82 61.0
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 1.3e-17 92.8 82 59.8
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-17 92.4 82 61.0
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 1.8e-17 92.4 82 61.0
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 2.3e-17 92.0 82 61.0
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 6.7e-17 90.5 82 59.8
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.1e-16 89.7 82 58.5
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.5e-16 89.4 82 57.3
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 1.9e-16 89.0 82 59.8
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 1.9e-16 89.0 82 59.8
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.5e-16 88.6 82 59.8
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 3.3e-16 88.2 82 57.3
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.3e-16 87.8 82 58.5
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 5.7e-16 87.4 82 58.5
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 5.7e-16 87.4 82 58.5
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.7e-16 87.4 82 57.3
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 7.4e-16 87.0 82 57.3
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 7.4e-16 87.0 82 59.8
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 9.7e-16 86.7 82 57.3
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 9.7e-16 86.7 82 58.5
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 9.7e-16 86.7 82 58.5
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 9.7e-16 86.7 82 58.5
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-15 86.3 82 58.5
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 1.3e-15 86.3 82 58.5
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.3e-15 86.3 82 57.3
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.2e-15 85.5 82 56.1
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.8e-15 85.1 82 54.9
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.8e-15 84.3 82 56.1
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 4.8e-15 84.3 82 54.9
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.8e-15 84.3 82 56.1
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 6.3e-15 84.0 82 53.7
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 6.3e-15 84.0 82 53.7
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 6.3e-15 84.0 82 53.7
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 6.3e-15 84.0 82 53.7
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 8.2e-15 83.6 82 56.1
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 8.2e-15 83.6 82 56.1
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 8.2e-15 83.6 82 56.1
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 8.2e-15 83.6 82 54.9
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-14 82.8 82 56.1
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-14 82.4 82 54.9
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 3.1e-14 81.6 82 52.4
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 3.1e-14 81.6 82 52.4
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 3.1e-14 81.6 82 54.9
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 3.1e-14 81.6 82 54.9
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.1e-14 81.6 82 53.7
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 4.1e-14 81.3 82 56.1
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 4.1e-14 81.3 82 53.7
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 4.1e-14 81.3 82 53.7
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.1e-14 81.3 82 52.4
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 9.0e-14 80.1 82 51.2
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 9.0e-14 80.1 82 53.7
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.2e-13 79.7 82 53.7
A07p41400 Brassica napus HOM05D002484 ORTHO05D002541 1.2e-13 79.7 82 56.1
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 1.5e-13 79.3 82 53.7
CARHR069260 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.5e-13 79.3 82 54.9
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 2.0e-13 79.0 82 51.2
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 2.0e-13 79.0 82 51.2
Thhalv10000535m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.4e-13 78.2 82 54.9
A02p20260 Brassica napus HOM05D002484 ORTHO05D002541 4.5e-13 77.8 82 50.0
C02p33640 Brassica napus HOM05D002484 ORTHO05D002541 4.5e-13 77.8 82 50.0
C03p41190 Brassica napus HOM05D002484 ORTHO05D100480 4.5e-13 77.8 47 70.2
BolC2t09340H Brassica oleracea HOM05D002484 ORTHO05D002541 4.5e-13 77.8 82 50.0
BraA02t07060Z Brassica rapa HOM05D002484 ORTHO05D002541 4.5e-13 77.8 82 50.0
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 5.9e-13 77.4 82 51.2
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 7.7e-13 77.0 82 51.2
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 7.7e-13 77.0 82 51.2
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 1.7e-12 75.9 95 45.3
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.2e-12 75.5 83 55.4
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.2e-12 75.5 82 50.0
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 8.5e-12 73.6 82 50.0
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 8.5e-12 73.6 82 47.6
A06p39910 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-11 72.8 83 45.8
BraA06t26906Z Brassica rapa HOM05D002484 ORTHO05D002541 2.5e-11 72.0 83 44.6
AL1G66200 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 4.2e-11 71.2 83 50.6
C04p06240 Brassica napus HOM05D002484 ORTHO05D002541 9.4e-11 70.1 83 43.4
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 9.4e-11 70.1 85 48.2
BcaB02g08968 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-10 69.7 82 45.1
BcaB02g08940 Brassica carinata HOM05D002484 ORTHO05D002541 1.6e-10 69.3 82 45.1
A05p05280 Brassica napus HOM05D002484 ORTHO05D002541 1.6e-10 69.3 83 43.4
A05p05350 Brassica napus HOM05D002484 ORTHO05D002541 1.6e-10 69.3 82 46.3
BraA05t19505Z Brassica rapa HOM05D002484 ORTHO05D002541 1.6e-10 69.3 82 46.3
CARHR069250 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.7e-10 68.6 83 53.0
BcaC02g12223 Brassica carinata HOM05D002484 ORTHO05D002541 3.6e-10 68.2 83 44.6
BcaB02g08967 Brassica carinata HOM05D002484 ORTHO05D002541 6.1e-10 67.4 82 43.9
BcaC02g12226 Brassica carinata HOM05D002484 ORTHO05D002541 6.1e-10 67.4 83 43.4
BcaB02g08969 Brassica carinata HOM05D002484 ORTHO05D002541 7.9e-10 67.0 82 43.9
BolC4t22248H Brassica oleracea HOM05D002484 ORTHO05D002541 7.9e-10 67.0 83 44.6
C04p06270 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-09 66.2 83 42.2
BcaC02g12225 Brassica carinata HOM05D002484 ORTHO05D002541 1.8e-09 65.9 83 45.8
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 2.3e-09 65.5 82 48.8
C04p06250 Brassica napus HOM05D002484 ORTHO05D002541 3.0e-09 65.1 83 44.6
AT1G55010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.9e-09 64.7 83 44.6
AL1G65590 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.1e-09 64.3 83 44.6
A05p05270 Brassica napus HOM05D002484 ORTHO05D002541 5.1e-09 64.3 83 42.2
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.7e-08 60.8 44 59.1
BcaC08g47323 Brassica carinata HOM05D002484 ORTHO05D002541 1.7e-07 59.3 41 58.5
CARHR069380 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.2e-07 58.9 79 48.1
Carub.0002s0817 Capsella rubella HOM05D002484 ORTHO05D002541 2.4e-06 55.5 83 38.6
CARHR216400 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.3e-06 54.3 85 44.7
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 9.1e-06 53.5 44 52.3


User provided reference genes

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