Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 2.8e-41 171.4 81 100.0
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 2.8e-41 171.4 81 100.0
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 5.9e-39 163.7 81 93.8
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 5.9e-39 163.7 81 93.8
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-38 162.5 81 92.6
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 1.3e-38 162.5 81 92.6
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 6.1e-36 153.7 93 80.6
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 3.8e-30 134.4 81 74.1
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 1.1e-29 132.9 81 74.1
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-29 132.9 81 72.8
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 1.9e-29 132.1 81 71.6
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 2.5e-29 131.7 81 72.8
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 3.3e-29 131.3 81 72.8
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 5.6e-29 130.6 81 72.8
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 5.6e-29 130.6 81 71.6
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 5.6e-29 130.6 81 72.8
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 5.6e-29 130.6 81 71.6
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 5.6e-29 130.6 81 71.6
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 9.5e-29 129.8 81 74.1
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 1.2e-28 129.4 81 71.6
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 1.2e-28 129.4 81 71.6
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 1.2e-28 129.4 81 71.6
Thhalv10019397m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.1e-28 128.6 81 71.6
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.8e-28 128.3 81 72.8
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.8e-28 128.3 81 72.8
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.6e-28 127.9 81 72.8
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 6.1e-28 127.1 81 72.8
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 8.0e-28 126.7 81 69.1
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.0e-27 126.3 81 70.4
BcaC08g47074 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-27 125.9 81 71.6
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.8e-27 125.6 81 71.6
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 2.3e-27 125.2 81 69.1
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 2.3e-27 125.2 81 69.1
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 2.3e-27 125.2 81 69.1
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 2.3e-27 125.2 81 67.9
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.0e-27 124.8 81 70.4
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 3.0e-27 124.8 81 69.1
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 3.0e-27 124.8 81 71.6
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.0e-27 124.4 81 67.9
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 5.2e-27 124.0 81 67.9
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 6.8e-27 123.6 81 69.1
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 8.9e-27 123.2 81 67.9
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 1.5e-26 122.5 81 66.7
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 70.4
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 70.4
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 70.4
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 2.0e-26 122.1 81 69.1
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 2.6e-26 121.7 81 67.9
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 5.7e-26 120.6 81 69.1
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 5.7e-26 120.6 81 69.1
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 5.7e-26 120.6 81 69.1
A02p20260 Brassica napus HOM05D002484 ORTHO05D002541 9.8e-26 119.8 83 71.1
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 9.8e-26 119.8 81 67.9
C02p33640 Brassica napus HOM05D002484 ORTHO05D002541 9.8e-26 119.8 83 71.1
BolC2t09340H Brassica oleracea HOM05D002484 ORTHO05D002541 9.8e-26 119.8 83 71.1
BraA02t07060Z Brassica rapa HOM05D002484 ORTHO05D002541 9.8e-26 119.8 83 71.1
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 9.8e-26 119.8 81 67.9
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.7e-25 119.0 81 67.9
Carub.0002s1189 Capsella rubella HOM05D002484 ORTHO05D002541 6.4e-25 117.1 83 67.5
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 8.3e-25 116.7 81 65.4
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-24 116.3 81 67.9
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-24 115.5 81 66.7
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 4.1e-24 114.4 81 65.4
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 4.1e-24 114.4 81 65.4
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 5.4e-24 114.0 81 63.0
BcaC08g45551 Brassica carinata HOM05D002484 ORTHO05D002541 9.2e-24 113.2 81 65.4
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 9.2e-24 113.2 81 64.2
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 3.5e-23 111.3 81 65.4
CARHR069320 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.5e-23 111.3 82 63.4
Aqoxy5G01512 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 8.6e-22 106.7 81 60.5
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.1e-21 106.3 81 61.7
AL1G66200 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 4.3e-21 104.4 82 63.4
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.6e-21 104.0 81 58.0
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 9.5e-21 103.2 65 66.2
CARHR069250 Cardamine hirsuta HOM05D002484 ORTHO05D002541 9.5e-21 103.2 82 67.1
A07p41400 Brassica napus HOM05D002484 ORTHO05D002541 2.3e-19 98.6 81 60.5
CARHR069380 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.3e-19 98.6 77 58.4
CARHR069290 Cardamine hirsuta HOM05D002484 ORTHO05D002541 8.9e-19 96.7 81 56.8
CARHR069260 Cardamine hirsuta HOM05D002484 ORTHO05D002541 2.6e-18 95.1 81 60.5
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 3.7e-17 91.3 58 65.5
C04p06240 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-16 89.7 81 49.4
A05p05280 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-16 88.6 80 48.8
C04p06270 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-16 88.6 81 49.4
A05p05270 Brassica napus HOM05D002484 ORTHO05D002541 3.2e-16 88.2 81 49.4
C02p33860 Brassica napus HOM05D002484 ORTHO05D002541 3.2e-16 88.2 82 56.1
A06p39910 Brassica napus HOM05D002484 ORTHO05D002541 4.1e-16 87.8 81 48.1
C04p06250 Brassica napus HOM05D002484 ORTHO05D002541 4.1e-16 87.8 81 49.4
BcaC02g12223 Brassica carinata HOM05D002484 ORTHO05D002541 5.4e-16 87.4 81 49.4
A05p05350 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-16 87.4 81 49.4
BraA05t19505Z Brassica rapa HOM05D002484 ORTHO05D002541 5.4e-16 87.4 81 49.4
BraA06t26906Z Brassica rapa HOM05D002484 ORTHO05D002541 7.0e-16 87.0 81 46.9
BcaC02g12225 Brassica carinata HOM05D002484 ORTHO05D002541 9.2e-16 86.7 81 49.4
BcaC02g12226 Brassica carinata HOM05D002484 ORTHO05D002541 9.2e-16 86.7 81 49.4
Thhalv10000535m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.6e-15 85.9 81 54.3
BolC4t22248H Brassica oleracea HOM05D002484 ORTHO05D002541 2.7e-15 85.1 81 48.1
BolC2t09321H Brassica oleracea HOM05D002484 ORTHO05D002541 4.6e-15 84.3 82 54.9
BcaB05g24949 Brassica carinata HOM05D002484 ORTHO05D002541 7.8e-15 83.6 82 52.4
CARHR216400 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.7e-14 82.4 83 54.2
BcaB02g08968 Brassica carinata HOM05D002484 ORTHO05D002541 3.0e-14 81.6 81 49.4
BcaB02g08940 Brassica carinata HOM05D002484 ORTHO05D002541 5.0e-14 80.9 81 49.4
BcaC03g15604 Brassica carinata HOM05D002484 ORTHO05D002541 8.6e-14 80.1 87 49.4
BcaB02g08967 Brassica carinata HOM05D002484 ORTHO05D002541 1.5e-13 79.3 81 48.1
AT1G55010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.9e-13 79.0 82 48.8
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.9e-13 79.0 82 47.6
BcaB02g08969 Brassica carinata HOM05D002484 ORTHO05D002541 7.3e-13 77.0 81 46.9
AL1G65590 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 9.5e-13 76.6 82 47.6
BcaC08g47323 Brassica carinata HOM05D002484 ORTHO05D002541 3.6e-12 74.7 47 59.6
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 3.6e-12 74.7 81 45.7
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 9.9e-10 66.6 85 45.9
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 9.9e-10 66.6 85 45.9
A05p05320 Brassica napus HOM05D003566 ORTHO05D003430 1.7e-09 65.9 59 44.1
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 2.9e-09 65.1 83 44.6
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 4.9e-09 64.3 73 45.2
Hma1.2p1_1051F.1_g252040 Hydrangea macrophylla HOM05D002484 ORTHO05D002541 4.9e-09 64.3 83 47.0
BcaC08g47076 Brassica carinata HOM05D002484 ORTHO05D002541 1.1e-08 63.2 49 65.3
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 3.2e-08 61.6 71 42.3
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 4.1e-08 61.2 81 43.2
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 7.1e-08 60.5 66 42.4
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 7.1e-08 60.5 72 38.9
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 9.2e-08 60.1 58 44.8
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 9.2e-08 60.1 75 38.7
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 9.2e-08 60.1 71 39.4
AL8G15430 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.2e-07 59.7 38 81.6
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 1.2e-07 59.7 71 39.4
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 1.2e-07 59.7 82 39.0
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.6e-07 59.3 81 35.8
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 1.6e-07 59.3 52 48.1
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.6e-07 59.3 64 45.3
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 3.5e-07 58.2 63 38.1
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 4.6e-07 57.8 74 36.5
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 4.6e-07 57.8 74 36.5
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 6.0e-07 57.4 84 42.9
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 7.8e-07 57.0 63 42.9
ECA236G0419 Erigeron canadensis HOM05D002484 ORTHO05D002541 7.8e-07 57.0 50 50.0
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 7.8e-07 57.0 50 46.0
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 7.8e-07 57.0 80 38.8
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 7.8e-07 57.0 79 40.5
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 7.8e-07 57.0 76 40.8
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 1.0e-06 56.6 73 39.7
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 1.0e-06 56.6 80 36.2
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 1.3e-06 56.2 86 33.7
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 1.3e-06 56.2 83 44.6
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 1.3e-06 56.2 85 40.0
BraA07t31673Z Brassica rapa HOM05D002484 ORTHO05D002541 1.7e-06 55.8 40 77.5
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 1.7e-06 55.8 74 33.8
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.7e-06 55.8 46 47.8
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 1.7e-06 55.8 79 39.2
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 2.3e-06 55.5 80 40.0
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 3.0e-06 55.1 81 39.5
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 3.0e-06 55.1 80 33.8
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 3.0e-06 55.1 80 33.8
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 3.0e-06 55.1 52 44.2
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 3.0e-06 55.1 75 40.0
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 5.1e-06 54.3 77 33.8
arahy.Tifrunner.gnm1.ann1.81M2S6 Arachis hypogaea HOM05D002484 ORTHO05D002541 6.6e-06 53.9 69 37.7
Sc14g0001850 Simmondsia chinensis HOM05D002484 ORTHO05D002541 6.6e-06 53.9 78 35.9
Sc14g0001860 Simmondsia chinensis HOM05D002484 ORTHO05D002541 6.6e-06 53.9 78 35.9
PGSC0003DMG400008516 Solanum tuberosum HOM05D002484 ORTHO05D002541 6.6e-06 53.9 72 40.3
ECA236G0027 Erigeron canadensis HOM05D002484 ORTHO05D002541 8.6e-06 53.5 56 42.9
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 8.6e-06 53.5 79 35.4


User provided reference genes

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