Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 2.6e-138 495.4 249 100.0
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 7.3e-88 327.8 252 65.5
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.2e-87 327.0 253 64.8
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.2e-87 327.0 253 66.0
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 6.2e-87 324.7 247 65.6
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.1e-86 323.9 247 66.0
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 2.3e-86 322.8 252 64.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 2.3e-86 322.8 252 64.7
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.3e-86 322.8 252 64.7
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 2.3e-86 322.8 252 64.7
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 2.3e-86 322.8 252 64.7
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 8.9e-86 320.9 249 65.9
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.2e-85 320.5 247 64.8
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.2e-85 320.5 247 65.2
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.5e-85 320.1 248 66.5
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.5e-85 320.1 268 61.2
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.6e-85 319.3 255 64.3
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 3.4e-85 318.9 252 63.9
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.8e-85 318.2 247 64.0
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 7.5e-85 317.8 243 66.3
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 9.9e-85 317.4 252 63.1
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.7e-84 315.5 247 61.9
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.9e-83 313.2 238 64.3
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.4e-83 312.8 245 64.1
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 4.1e-83 312.0 242 65.3
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 7.1e-83 311.2 244 62.7
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.2e-82 310.5 253 62.8
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.6e-82 310.1 241 64.7
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.1e-82 309.7 242 63.6
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.7e-82 309.3 186 75.8
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.5e-82 308.9 241 63.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 4.6e-82 308.5 242 63.6
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.6e-82 308.5 245 61.2
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.6e-82 308.5 247 62.8
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.8e-82 307.8 197 73.1
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.0e-81 307.4 240 62.5
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.0e-81 307.4 240 62.5
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.3e-81 307.0 241 65.1
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 2.3e-81 306.2 246 61.4
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.1e-80 303.9 238 63.0
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.5e-80 303.5 260 58.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 4.3e-80 302.0 238 62.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 5.6e-80 301.6 241 60.2
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 7.3e-80 301.2 234 64.1
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.8e-79 299.3 229 63.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 4.7e-79 298.5 236 61.4
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.6e-77 292.7 239 59.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 9.9e-77 290.8 254 57.9
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 9.9e-77 290.8 256 60.2
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.3e-76 290.4 249 59.8
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.4e-75 287.0 189 70.4
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 2.1e-74 283.1 241 59.3
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.9e-73 278.9 242 59.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 8.7e-73 277.7 170 82.4
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 7.3e-72 274.6 167 76.0
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.2e-71 273.9 176 72.2
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 2.1e-71 273.1 241 58.9
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 3.6e-71 272.3 244 56.6
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.1e-70 270.8 239 59.0
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.4e-70 269.6 240 58.8
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 3.1e-70 269.2 240 57.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 4.0e-70 268.9 240 56.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.0e-70 267.7 241 57.3
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 9.0e-70 267.7 239 57.3
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.2e-69 267.3 241 57.3
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 5.8e-69 265.0 255 55.7
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 9.9e-69 264.2 241 57.3
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.3e-68 263.8 261 54.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 8.4e-68 261.2 267 52.8
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 8.4e-68 261.2 251 55.0
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.4e-67 259.6 245 54.7
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.2e-67 258.8 254 54.3
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.2e-66 257.3 240 54.6
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.1e-66 256.5 234 56.8
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.7e-66 256.1 243 53.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 6.0e-66 255.0 243 54.7
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.0e-65 252.7 234 56.8
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 3.9e-65 252.3 245 52.2
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 3.9e-65 252.3 243 52.7
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 3.9e-65 252.3 243 52.7
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 6.6e-65 251.5 243 53.9
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 8.7e-65 251.1 252 52.8
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.5e-64 250.4 244 54.5
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-64 250.4 244 54.5
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-64 250.4 244 54.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.5e-64 250.4 254 51.6
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.5e-64 249.6 242 52.1
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 5.6e-64 248.4 251 51.8
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 7.3e-64 248.1 250 52.4
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.6e-64 247.7 244 53.7
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.6e-63 246.9 233 55.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.8e-63 246.1 234 54.7
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 4.8e-63 245.4 232 56.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 6.2e-63 245.0 245 50.6
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.2e-63 245.0 253 53.0
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 6.2e-63 245.0 183 62.3
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 6.2e-63 245.0 247 51.4
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.4e-62 243.8 182 62.6
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.8e-62 243.4 181 63.5
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.3e-62 241.9 248 50.8
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 9.0e-62 241.1 238 52.9
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.5e-61 240.4 245 51.4
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.6e-61 239.6 226 56.6
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 4.5e-61 238.8 243 52.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 5.8e-61 238.4 240 52.5
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 9.9e-61 237.7 242 50.4
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.2e-60 236.5 243 50.6
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 3.8e-60 235.7 235 53.2
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 6.4e-60 235.0 240 49.2
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.1e-59 234.2 251 50.6
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-59 233.8 125 91.2
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.9e-59 233.4 244 54.5
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 5.4e-59 231.9 241 49.0
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.5e-58 229.2 243 50.2
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 4.6e-58 228.8 254 48.4
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 7.9e-58 228.0 177 60.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 8.7e-57 224.6 186 57.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.5e-56 223.0 240 49.6
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.6e-55 220.3 240 49.6
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 4.8e-55 218.8 236 49.2
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.2e-55 218.4 234 51.3
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 6.2e-55 218.4 229 50.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.4e-54 216.5 171 61.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 1.5e-53 213.8 234 49.1
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.5e-53 213.8 124 78.2
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 6.4e-52 208.4 121 81.8
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.0e-49 199.5 211 51.2
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 5.1e-49 198.7 168 64.9
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.3e-47 194.1 108 80.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 4.8e-47 192.2 120 73.3
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 4.8e-47 192.2 108 78.7
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 8.2e-47 191.4 200 49.5
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.6e-45 184.9 131 66.4
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.2e-42 177.6 109 72.5
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.1e-40 171.0 234 41.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 6.9e-38 161.8 85 84.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.3e-31 141.0 198 40.4
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-30 137.1 95 77.9
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-28 130.2 109 56.9
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 8.5e-28 128.3 179 43.0
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.4e-22 110.2 184 37.0
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 8.5e-20 101.7 190 37.9
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-16 90.9 84 59.5
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 7.4e-16 88.6 51 80.4


User provided reference genes

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