Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24709 Brassica carinata HOM05D000141 ORTHO05D095451 2.2e-91 339.0 175 100.0
BcaC08g43634 Brassica carinata HOM05D000141 ORTHO05D004038 2.9e-22 109.4 72 77.8
BcaB07g33207 Brassica carinata HOM05D000141 ORTHO05D004038 4.9e-22 108.6 72 77.8
C06p10500 Brassica napus HOM05D000141 ORTHO05D004038 8.3e-22 107.8 72 76.4
BolC6t36130H Brassica oleracea HOM05D000141 ORTHO05D004038 8.3e-22 107.8 72 76.4
A08p00520 Brassica napus HOM05D000141 ORTHO05D004038 3.2e-21 105.9 72 75.0
A06p00180 Brassica napus HOM05D000141 ORTHO05D004038 4.1e-21 105.5 72 75.0
C03p92880 Brassica napus HOM05D000141 ORTHO05D004038 7.1e-21 104.8 72 73.6
BraA06t23234Z Brassica rapa HOM05D000141 ORTHO05D004038 9.2e-21 104.4 72 73.6
Thhalv10011232m.g Eutrema salsugineum HOM05D000141 ORTHO05D004038 1.6e-20 103.6 72 72.2
BolC3t21594H Brassica oleracea HOM05D000141 ORTHO05D004038 2.1e-20 103.2 72 72.2
BraA08t32111Z Brassica rapa HOM05D000141 ORTHO05D004038 2.1e-20 103.2 72 73.6
Sp1g41180 Schrenkiella parvula HOM05D000141 ORTHO05D004038 4.6e-20 102.1 72 73.6
Carub.0001s4407 Capsella rubella HOM05D000141 ORTHO05D004038 1.1e-18 97.4 72 66.7
AL1G63600 Arabidopsis lyrata HOM05D000141 ORTHO05D004038 9.5e-18 94.4 72 66.7
AT1G55550 Arabidopsis thaliana HOM05D000141 ORTHO05D004038 1.4e-16 90.5 72 61.1
CARHR045250 Cardamine hirsuta HOM05D000141 ORTHO05D004038 8.4e-14 81.3 71 63.4
Thecc.09G206200 Theobroma cacao HOM05D000141 ORTHO05D004038 3.2e-13 79.3 72 55.6
MD03G1001300 Malus domestica HOM05D000141 ORTHO05D004038 2.1e-12 76.6 72 54.2
Ciclev10014163m.g Citrus clementina HOM05D000141 ORTHO05D004038 4.6e-12 75.5 72 51.4
Gohir.A08G082800 Gossypium hirsutum HOM05D000141 ORTHO05D004038 7.8e-12 74.7 72 52.8
Gohir.D08G092200 Gossypium hirsutum HOM05D000141 ORTHO05D004038 7.8e-12 74.7 72 52.8
Gorai.004G097800 Gossypium raimondii HOM05D000141 ORTHO05D004038 7.8e-12 74.7 72 52.8
Lj2A788G31 Lonicera japonica HOM05D000141 ORTHO05D004038 7.8e-12 74.7 72 51.4
Dinv06246 Davidia involucrata HOM05D000141 ORTHO05D004038 1.3e-11 73.9 72 50.0
Dinv15520 Davidia involucrata HOM05D000141 ORTHO05D004038 1.3e-11 73.9 72 50.0
RcHm_v2.0_Chr5g0084121 Rosa chinensis HOM05D000141 ORTHO05D004038 1.3e-11 73.9 71 53.5
TAR633G0592 Trochodendron aralioides HOM05D000141 ORTHO05D004038 1.3e-11 73.9 72 51.4
COL.COLO4_35062 Corchorus olitorius HOM05D000141 ORTHO05D004038 2.3e-11 73.2 72 54.2
THA.LOC104822687 Tarenaya hassleriana HOM05D000141 ORTHO05D004038 2.3e-11 73.2 72 52.8
Atru.chr3.2046 Acer truncatum HOM05D000141 ORTHO05D004038 3.0e-11 72.8 72 48.6
FAN21G0611 Fragaria x ananassa HOM05D000141 ORTHO05D004038 3.0e-11 72.8 71 52.1
CANSAT78G1797 Cannabis sativa HOM05D000141 ORTHO05D004038 3.9e-11 72.4 72 52.8
Prupe.6G000800 Prunus persica HOM05D000141 ORTHO05D004038 5.1e-11 72.0 72 50.0
Potri.001G000800 Populus trichocarpa HOM05D000141 ORTHO05D004038 8.6e-11 71.2 73 49.3
PGR102G2537 Punica granatum HOM05D000141 ORTHO05D004038 8.6e-11 71.2 72 51.4
Actinidia16225 Actinidia chinensis HOM05D000141 ORTHO05D004038 1.1e-10 70.9 72 50.0
BcaC08g45725 Brassica carinata HOM05D000672 ORTHO05D000522 1.1e-10 70.9 38 89.5
A07p30340 Brassica napus HOM05D000672 ORTHO05D000522 1.1e-10 70.9 38 89.5
C06p35110 Brassica napus HOM05D000672 ORTHO05D000522 1.1e-10 70.9 38 89.5
BolC6t38615H Brassica oleracea HOM05D000672 ORTHO05D000522 1.1e-10 70.9 38 89.5
BraA07t30671Z Brassica rapa HOM05D000672 ORTHO05D000522 1.1e-10 70.9 38 89.5
Thhalv10018429m.g Eutrema salsugineum HOM05D000672 ORTHO05D000522 1.1e-10 70.9 38 89.5
TWI34G1411 Tripterygium wilfordii HOM05D000141 ORTHO05D004038 1.1e-10 70.9 72 50.0
GSVIVG01025512001 Vitis vinifera HOM05D000141 ORTHO05D004038 1.1e-10 70.9 72 51.4
Cfa009525 Carpinus fangiana HOM05D000141 ORTHO05D004038 1.5e-10 70.5 73 46.6
FAN16G0239 Fragaria x ananassa HOM05D000141 ORTHO05D004038 1.5e-10 70.5 71 50.7
Nitab4.5_0000075g0090 Nicotiana tabacum HOM05D000141 ORTHO05D004038 1.5e-10 70.5 68 54.4
CiPaw.13G179500 Carya illinoinensis HOM05D000141 ORTHO05D004038 1.9e-10 70.1 72 45.8
Eucgr.B03582 Eucalyptus grandis HOM05D000141 ORTHO05D004038 1.9e-10 70.1 72 48.6
FvH4_3g46040 Fragaria vesca HOM05D000141 ORTHO05D004038 1.9e-10 70.1 71 50.7
BcaB03g15653 Brassica carinata HOM05D000672 ORTHO05D000522 2.5e-10 69.7 38 86.8
Duzib170G0369 Durio zibethinus HOM05D000141 ORTHO05D004038 2.5e-10 69.7 72 51.4
QL01p007777 Quercus lobata HOM05D000141 ORTHO05D004038 4.3e-10 68.9 73 46.6
A02p17740 Brassica napus HOM05D000672 ORTHO05D000522 5.6e-10 68.6 38 86.8
BraA02t06820Z Brassica rapa HOM05D000672 ORTHO05D000522 5.6e-10 68.6 38 86.8
Potri.003G223800 Populus trichocarpa HOM05D000141 ORTHO05D004038 5.6e-10 68.6 72 47.2
AL2G31820 Arabidopsis lyrata HOM05D000672 ORTHO05D000522 7.3e-10 68.2 38 81.6
Carub.0002s1896 Capsella rubella HOM05D000672 ORTHO05D000522 7.3e-10 68.2 38 81.6
Manes.15G111300 Manihot esculenta HOM05D000141 ORTHO05D004038 9.6e-10 67.8 72 47.2
BcaB05g24720 Brassica carinata HOM05D000672 ORTHO05D000522 1.2e-09 67.4 38 84.2
Sopen10g006400 Solanum pennellii HOM05D000141 ORTHO05D004038 1.2e-09 67.4 74 50.0
PGSC0003DMG400017832 Solanum tuberosum HOM05D000141 ORTHO05D004038 1.2e-09 67.4 74 50.0
Aa31LG4G8410 Aethionema arabicum HOM05D000672 ORTHO05D000522 1.6e-09 67.0 38 81.6
BcaC03g15339 Brassica carinata HOM05D000672 ORTHO05D000522 2.1e-09 66.6 38 84.2
BcaC03g15340 Brassica carinata HOM05D000672 ORTHO05D000522 2.1e-09 66.6 38 84.2
C02p29460 Brassica napus HOM05D000672 ORTHO05D000522 2.1e-09 66.6 38 84.2
BolC2t08997H Brassica oleracea HOM05D000672 ORTHO05D000522 2.1e-09 66.6 38 84.2
TWI32G0986 Tripterygium wilfordii HOM05D000141 ORTHO05D004038 2.1e-09 66.6 72 45.8
AT1G72160 Arabidopsis thaliana HOM05D000672 ORTHO05D000522 2.8e-09 66.2 38 78.9
CARHR065010 Cardamine hirsuta HOM05D000672 ORTHO05D000522 2.8e-09 66.2 38 78.9
Sabra03G0166200 Salix brachista HOM05D000141 ORTHO05D004038 2.8e-09 66.2 72 45.8
Sp5g27240 Schrenkiella parvula HOM05D000672 ORTHO05D000522 2.8e-09 66.2 38 84.2
Sabra01G0000700 Salix brachista HOM05D000141 ORTHO05D004038 6.2e-09 65.1 72 48.6
Rhsim13G0235100 Rhododendron simsii HOM05D000141 ORTHO05D004038 1.8e-08 63.5 72 47.2
Peaxi162Scf01181g00016 Petunia axillaris HOM05D000141 ORTHO05D004038 2.4e-08 63.2 45 64.4
vmacro04278 Vaccinium macrocarpon HOM05D000141 ORTHO05D004038 2.4e-08 63.2 72 48.6
AagrBONN_evm.TU.Sc2ySwM_368.920 Anthoceros agrestis HOM05D000141 ORTHO05D004038 2.6e-07 59.7 73 47.9
FAN11G3403 Fragaria x ananassa HOM05D000141 ORTHO05D004038 2.6e-07 59.7 54 51.9
Potri.013G105900 Populus trichocarpa HOM05D000672 ORTHO05D000522 5.8e-07 58.5 38 65.8
Sabra13G0091400 Salix brachista HOM05D000672 ORTHO05D000522 5.8e-07 58.5 38 65.8
ECA233G5319 Erigeron canadensis HOM05D000141 ORTHO05D004038 1.3e-06 57.4 72 41.7
Nn7g35786 Nelumbo nucifera HOM05D000141 ORTHO05D004038 1.3e-06 57.4 73 45.2
THA.LOC104809730 Tarenaya hassleriana HOM05D000672 ORTHO05D000522 1.3e-06 57.4 38 68.4
Thecc.08G192300 Theobroma cacao HOM05D000672 ORTHO05D000522 1.7e-06 57.0 38 65.8
Duzib211G0159 Durio zibethinus HOM05D000672 ORTHO05D000522 2.2e-06 56.6 38 65.8
Lsat_1_v5_gn_6_56241 Lactuca sativa HOM05D000141 ORTHO05D004038 2.2e-06 56.6 72 41.7
MBI13_g02426_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004038 2.2e-06 56.6 67 46.3
Ciclev10000804m.g Citrus clementina HOM05D000672 ORTHO05D000522 2.9e-06 56.2 38 63.2
COL.COLO4_24655 Corchorus olitorius HOM05D000672 ORTHO05D000522 2.9e-06 56.2 38 63.2
HanXRQChr07g0186491 Helianthus annuus HOM05D000141 ORTHO05D004038 2.9e-06 56.2 72 40.3
Manes.02G198500 Manihot esculenta HOM05D000672 ORTHO05D000522 2.9e-06 56.2 38 63.2
PSO384G3803 Papaver somniferum HOM05D000141 ORTHO05D004038 4.9e-06 55.5 74 45.9
BcaB06g27954 Brassica carinata HOM05D000672 ORTHO05D000522 6.4e-06 55.1 34 76.5
AT4G09160 Arabidopsis thaliana HOM05D000672 ORTHO05D000522 8.4e-06 54.7 40 60.0


User provided reference genes

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