Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24414 Brassica carinata HOM05D000173 ORTHO05D095574 9.9e-64 246.5 115 100.0
Aa31LG10G9290 Aethionema arabicum HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Aa31LG5G23110 Aethionema arabicum HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
AL4G34130 Arabidopsis lyrata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
AL5G34730 Arabidopsis lyrata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
AT2G37620 Arabidopsis thaliana HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
AT3G53750 Arabidopsis thaliana HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BcaB01g00246 Brassica carinata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BcaB02g07765 Brassica carinata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BcaB02g08509 Brassica carinata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BcaB02g08510 Brassica carinata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BcaC02g09134 Brassica carinata HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BcaC08g44648 Brassica carinata HOM05D000173 ORTHO05D032441 8.5e-07 57.4 33 78.8
A04p05900 Brassica napus HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
C04p38810 Brassica napus HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
C06p21640 Brassica napus HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BolC4t25454H Brassica oleracea HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
BolC6t37353H Brassica oleracea HOM05D000173 ORTHO05D032441 8.5e-07 57.4 33 78.8
BraA04t16294Z Brassica rapa HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Carub.0004s1955 Capsella rubella HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Carub.0005s2033 Capsella rubella HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
CARHR131960 Cardamine hirsuta HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Thhalv10010455m.g Eutrema salsugineum HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Thhalv10016809m.g Eutrema salsugineum HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Sp4g19980 Schrenkiella parvula HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Sp5g08630 Schrenkiella parvula HOM05D000173 ORTHO05D000316 8.5e-07 57.4 33 78.8
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 8.5e-07 57.4 33 78.8
BcaB01g00242 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaB01g03766 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaB02g09268 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaB06g29014 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaC01g05605 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaC02g07504 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaC02g11881 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BcaC07g39734 Brassica carinata HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
A03p20760 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
A04p28810 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
A05p08340 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
A09p46730 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
C03p24400 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
C04p10330 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
C04p66080 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
C08p29060 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BolC3t14839H Brassica oleracea HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BolC4t22632H Brassica oleracea HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BolC4t28113H Brassica oleracea HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BolC8t50507H Brassica oleracea HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BraA03t11317Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BraA04t18358Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BraA05t19799Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
BraA09t40135Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
Solyc09g010750.3 Solanum lycopersicum HOM05D000173 ORTHO05D000316 1.1e-06 57.0 33 78.8
Aa31sc23G450 Aethionema arabicum HOM05D000173 ORTHO05D000316 2.5e-06 55.8 33 75.8
Aa31LG4G15530 Aethionema arabicum HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
AL5G25390 Arabidopsis lyrata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
AL8G35810 Arabidopsis lyrata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
AT3G46520 Arabidopsis thaliana HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
AT5G59370 Arabidopsis thaliana HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaB01g01011 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaB01g04591 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaB02g10716 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaB05g22506 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaB05g23558 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaC01g01911 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaC01g02258 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaC01g06529 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaC03g14014 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaC04g19781 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BcaC09g49751 Brassica carinata HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
A01p26220 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
A02p07140 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
A03p11740 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
A06p20910 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
A06p27040 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
A10p16580 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BNapus_Darmor_BZH_scaffold_82p00090 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
C01p33330 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
C03p13800 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
C03p70690 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 3.2e-06 55.5 33 75.8
BolC1t03265H Brassica oleracea HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BolC2t07351H Brassica oleracea HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BolC3t13828H Brassica oleracea HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BolC3t19010H Brassica oleracea HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BolC3t19311H Brassica oleracea HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 3.2e-06 55.5 33 75.8
BraA02t05795Z Brassica rapa HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BraA03t10486Z Brassica rapa HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BraA06t25172Z Brassica rapa HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BraA06t25642Z Brassica rapa HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Carub.0005s1279 Capsella rubella HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Carub.0008s2004 Capsella rubella HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
CARHR155270 Cardamine hirsuta HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
CARHR285740 Cardamine hirsuta HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Eucgr.G02932 Eucalyptus grandis HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Thhalv10002572m.g Eutrema salsugineum HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Thhalv10013840m.g Eutrema salsugineum HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Sp5g15160 Schrenkiella parvula HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
Sp6g21050 Schrenkiella parvula HOM05D000173 ORTHO05D000316 3.2e-06 55.5 33 75.8
PGSC0003DMG400008619 Solanum tuberosum HOM05D000173 ORTHO05D023167 3.2e-06 55.5 33 69.7
CAN.G1686.2 Capsicum annuum HOM05D000173 ORTHO05D000316 4.2e-06 55.1 33 69.7
Peaxi162Scf00664g00322 Petunia axillaris HOM05D000173 ORTHO05D000316 4.2e-06 55.1 33 69.7
Peaxi162Scf00765g00015 Petunia axillaris HOM05D000173 ORTHO05D011717 4.2e-06 55.1 33 69.7
Peaxi162Scf00765g00133 Petunia axillaris HOM05D000173 ORTHO05D000316 4.2e-06 55.1 33 69.7
Peaxi162Scf03165g00002 Petunia axillaris HOM05D000173 ORTHO05D000316 4.2e-06 55.1 33 69.7
Lsat_1_v5_gn_5_107420 Lactuca sativa HOM05D000173 ORTHO05D000316 5.5e-06 54.7 33 72.7
Oeu033735.1 Olea europaea HOM05D000173 ORTHO05D000316 5.5e-06 54.7 33 75.8
Dinv26012 Davidia involucrata HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Eucgr.J00015 Eucalyptus grandis HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Glyma.05G000900 Glycine max HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 72.7
Glyma.19G000900 Glycine max HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 72.7
MBI06_g15027_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 72.7
MBI08_g23099_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 72.7
Manes.10G030700 Manihot esculenta HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Manes.10G030800 Manihot esculenta HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Nitab4.5_0001137g0040 Nicotiana tabacum HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Oeu064391.1 Olea europaea HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Phvul.007G260000 Phaseolus vulgaris HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 72.7
Psat3g166680 Pisum sativum HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
PGR044G2194 Punica granatum HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Sed0026966 Sechium edule HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Sc06g0008300 Simmondsia chinensis HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
Sc12g0001540 Simmondsia chinensis HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 75.8
VMungo0720G0827 Vigna mungo HOM05D000173 ORTHO05D000316 7.2e-06 54.3 33 72.7
MSTRG.27829 Avicennia marina HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 69.7
Ca_04125_v3 Cicer arietinum L. HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Ciclev10011973m.g Citrus clementina HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Ciclev10028665m.g Citrus clementina HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Cc06_g15890 Coffea canephora HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
DCAR_001811 Daucus carota HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Eucgr.K01841 Eucalyptus grandis HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Lj4g0021829 Lotus japonicus HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Manes.07G115900 Manihot esculenta HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Manes.08G043100 Manihot esculenta HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Manes.09G035600 Manihot esculenta HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Medtr6g004000 Medicago truncatula HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Oeu007765.1 Olea europaea HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Os01g0964133 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Phvul.004G001000 Phaseolus vulgaris HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Psat1g052320 Pisum sativum HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
Prupe.6G078800 Prunus persica HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
PGR142G4365 Punica granatum HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
QL01p032232 Quercus lobata HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
QL07p023766 Quercus lobata HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
TPR.G25239 Trifolium pratense HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
TWI15G0930 Tripterygium wilfordii HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
TWI31G0558 Tripterygium wilfordii HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
unitig_8.g3520 Utricularia gibba HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7
VMungo0464G1114 Vigna mungo HOM05D000173 ORTHO05D000316 9.4e-06 53.9 33 72.7


User provided reference genes

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