Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 4.7e-205 717.6 357 100.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-184 649.8 359 92.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 2.7e-184 648.7 359 92.2
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.0e-183 646.7 359 92.5
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 3.9e-183 644.8 359 92.5
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.5e-182 642.9 359 91.9
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 8.9e-180 633.6 357 88.5
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.5e-166 589.7 331 87.0
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.9e-166 589.3 332 85.8
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.9e-166 589.3 332 86.4
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.3e-166 588.6 332 87.0
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.2e-165 586.6 331 84.6
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.4e-163 578.6 331 85.8
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.7e-160 568.9 346 81.8
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.5e-160 568.5 368 76.4
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 3.8e-146 521.9 333 75.7
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 2.4e-145 519.2 339 71.1
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 7.9e-144 514.2 336 71.4
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.3e-143 513.5 340 70.9
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.1e-142 510.4 347 72.6
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.8e-141 505.8 338 68.6
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 6.2e-141 504.6 333 70.6
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.1e-140 503.8 342 71.3
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.4e-140 503.4 292 85.6
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.4e-140 503.4 339 71.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.8e-140 503.1 330 71.5
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.4e-140 502.7 339 70.5
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 2.4e-140 502.7 342 69.3
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 2.6e-139 499.2 339 72.6
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 7.6e-139 497.7 341 69.8
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.0e-138 497.3 355 66.5
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.3e-138 496.9 347 65.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 1.3e-138 496.9 339 69.9
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.7e-138 496.5 285 84.6
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 2.9e-138 495.7 356 66.9
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 8.4e-138 494.2 336 68.5
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.5e-137 491.5 334 68.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 5.5e-137 491.5 347 64.6
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 9.3e-137 490.7 330 70.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.2e-136 490.3 324 70.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.0e-135 487.3 338 67.8
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 3.0e-135 485.7 356 65.7
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.0e-135 485.7 345 66.4
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-134 483.8 337 67.1
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.5e-134 483.4 331 69.5
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 7.4e-134 481.1 337 68.5
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 7.4e-134 481.1 342 66.4
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 2.8e-133 479.2 327 69.1
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 4.8e-133 478.4 330 68.8
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 8.2e-133 477.6 346 65.0
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 1.1e-132 477.2 371 63.1
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.8e-132 476.5 325 68.9
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.4e-132 476.1 338 66.3
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.4e-132 476.1 342 64.6
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 3.1e-132 475.7 340 66.8
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.2e-131 473.8 328 69.5
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 1.2e-131 473.8 354 65.3
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.5e-131 473.4 329 69.6
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 2.0e-131 473.0 345 66.4
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.4e-131 472.2 329 69.0
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.0e-130 470.7 325 68.0
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.0e-130 470.7 336 66.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 5.0e-130 468.4 358 63.1
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 8.5e-130 467.6 340 65.0
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.4e-129 466.8 333 67.9
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.7e-128 462.6 344 65.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.6e-128 462.2 340 65.6
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 7.9e-128 461.1 332 65.7
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.5e-126 456.8 361 60.4
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.7e-125 452.2 239 90.8
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 5.3e-124 448.4 310 68.4
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 2.6e-123 446.0 321 67.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.7e-122 443.4 327 64.8
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 2.2e-122 443.0 320 64.7
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 3.8e-122 442.2 325 64.0
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.1e-121 440.7 325 63.4
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.5e-121 439.5 330 63.3
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 4.2e-121 438.7 319 65.8
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.5e-121 438.3 332 64.5
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.2e-121 438.0 331 63.1
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 2.1e-120 436.4 322 64.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 6.1e-120 434.9 357 59.9
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 7.9e-120 434.5 325 64.3
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.0e-119 434.1 409 52.8
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.4e-119 433.7 357 59.9
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.3e-119 433.0 331 64.0
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.6e-118 429.5 356 59.6
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 3.3e-118 429.1 373 59.2
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 7.4e-118 427.9 343 62.1
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 6.3e-117 424.9 328 62.2
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 8.2e-117 424.5 326 64.1
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.4e-115 419.1 350 58.0
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.8e-114 415.6 295 65.4
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 1.1e-113 414.1 324 59.6
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.9e-113 413.3 266 72.6
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.2e-112 410.6 580 41.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 2.1e-112 409.8 326 61.3
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 6.7e-111 404.8 295 65.4
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 6.7e-111 404.8 295 65.4
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 2.6e-110 402.9 339 57.8
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 4.4e-110 402.1 318 60.4
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.3e-109 398.3 325 60.9
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.1e-108 397.5 338 57.4
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 6.5e-106 388.3 331 57.4
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.5e-105 387.1 293 63.5
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 9.4e-105 384.4 253 73.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.2e-104 384.0 266 65.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.4e-103 380.6 333 56.2
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.4e-103 380.6 343 54.2
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 5.7e-102 375.2 355 52.4
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 5.9e-99 365.2 325 58.5
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 7.7e-99 364.8 205 84.9
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.2e-98 363.2 351 53.8
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.6e-96 357.1 321 53.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.4e-95 354.0 349 53.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 4.0e-95 352.4 262 61.1
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 2.0e-94 350.1 299 58.2
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 4.4e-94 349.0 262 64.9
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.1e-92 342.8 326 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.0e-86 323.6 274 55.5
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.8e-84 317.0 340 45.6
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.3e-81 306.2 197 70.1
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.2e-75 287.7 176 75.6
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.5e-73 280.0 197 65.0
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 2.9e-69 266.5 361 42.7
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 3.2e-68 263.1 245 51.8
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.3e-66 257.7 206 58.3
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.7e-66 257.3 308 41.9
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.3e-65 253.1 305 44.6
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.1e-55 219.9 178 57.3
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.5e-54 217.6 208 56.2
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.6e-54 216.9 262 43.5
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 4.4e-54 216.1 208 56.2
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.3e-53 214.5 214 53.3
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 4.9e-53 212.6 256 44.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 5.4e-52 209.1 139 69.8
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.0e-50 203.4 160 57.5
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.3e-45 188.0 286 37.1
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.0e-42 176.8 129 63.6
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 1.9e-36 157.5 296 36.1
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.2e-36 156.8 160 48.8
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 1.4e-31 141.4 79 79.7
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 3.2e-28 130.2 127 50.4
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 3.4e-22 110.2 120 48.3
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 1.3e-21 108.2 287 28.9
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.1e-19 100.9 91 54.9
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.1e-19 100.9 91 54.9
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.1e-19 100.9 181 33.1
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.1e-15 88.6 57 73.7
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.7e-13 81.3 112 42.9
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.5e-12 77.4 74 51.4
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 4.2e-12 76.6 48 75.0
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 1.5e-09 68.2 66 54.5
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 9.1e-07 58.9 39 56.4


User provided reference genes

Program Settings