Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-194 682.9 345 100.0
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 7.8e-189 663.7 345 96.2
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 5.0e-188 661.0 345 96.2
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 5.0e-188 661.0 343 96.2
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 6.6e-188 660.6 343 96.2
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 7.3e-187 657.1 345 95.9
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.1e-186 655.6 339 96.8
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 3.6e-186 654.8 345 95.7
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 4.7e-186 654.4 343 95.3
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-184 649.8 343 94.8
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.2e-184 649.8 345 94.2
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 6.4e-183 644.0 372 88.4
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.3e-180 636.3 345 93.0
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 6.8e-177 624.0 339 91.2
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 4.4e-176 621.3 344 89.8
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 2.9e-175 618.6 340 89.7
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.6e-170 602.8 339 91.7
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 3.6e-170 601.7 343 86.3
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.9e-169 597.0 340 87.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.3e-164 582.4 342 84.8
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 3.4e-136 488.8 331 73.1
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.1e-134 483.8 338 70.4
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.2e-134 481.9 331 71.9
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.5e-134 481.5 330 71.8
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 9.3e-134 480.7 340 69.4
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.6e-133 479.9 339 69.6
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.7e-133 479.2 330 71.8
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 7.9e-133 477.6 331 71.3
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.0e-132 475.7 340 69.4
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 5.1e-132 474.9 339 69.9
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.5e-131 473.4 330 70.3
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.5e-131 472.6 330 69.4
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.3e-131 472.2 330 69.1
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.3e-130 470.3 322 72.4
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 2.8e-130 469.2 331 67.4
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 3.7e-130 468.8 340 67.9
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 8.2e-130 467.6 342 67.3
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.9e-129 464.5 344 68.0
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.2e-128 463.8 342 67.8
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.0e-128 463.0 331 67.4
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 3.4e-128 462.2 333 67.3
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.3e-127 460.3 323 70.9
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.3e-127 460.3 330 69.1
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.7e-127 459.9 332 68.1
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 5.5e-126 454.9 338 66.3
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.2e-125 453.8 339 67.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.2e-125 453.8 339 67.0
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.5e-123 446.0 331 65.3
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 3.3e-123 445.7 329 67.2
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 5.7e-123 444.9 333 64.9
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 8.2e-122 441.0 344 64.2
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.4e-121 440.3 332 66.3
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 6.9e-121 438.0 344 62.2
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.5e-120 436.8 330 63.9
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.0e-120 436.4 330 63.9
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.0e-120 436.4 330 63.9
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 3.4e-120 435.6 330 63.6
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.5e-120 435.3 330 63.6
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 5.9e-120 434.9 335 63.6
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.7e-119 433.3 330 63.3
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.9e-119 432.6 331 64.7
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.5e-118 429.5 345 61.7
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 3.2e-118 429.1 330 64.2
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.2e-117 427.2 345 61.7
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 6.1e-117 424.9 345 61.2
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.5e-115 420.2 336 63.1
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 4.4e-115 418.7 331 63.7
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 4.4e-115 418.7 345 60.6
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 7.4e-115 417.9 345 60.3
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 9.7e-115 417.5 336 63.1
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.2e-114 416.4 339 63.4
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.8e-114 416.0 323 64.1
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 3.7e-114 415.6 343 61.5
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 4.8e-114 415.2 326 64.1
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 4.8e-114 415.2 340 61.2
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 8.2e-114 414.5 345 62.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.4e-113 413.7 330 63.3
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.8e-113 413.3 345 60.3
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 3.1e-113 412.5 334 62.0
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 4.1e-113 412.1 339 63.1
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 4.1e-113 412.1 325 63.1
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 5.3e-113 411.8 323 63.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 5.3e-113 411.8 330 62.4
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 5.3e-113 411.8 323 63.5
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.2e-112 410.6 344 61.9
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.2e-112 410.6 340 62.6
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 2.6e-112 409.5 339 61.9
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 1.4e-110 403.7 340 61.5
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 3.2e-110 402.5 340 59.1
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.7e-109 398.7 330 60.3
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.3e-108 396.4 331 61.9
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 5.2e-108 395.2 323 61.6
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 4.4e-107 392.1 346 59.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 7.4e-107 391.3 329 61.1
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 1.3e-106 390.6 333 58.9
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.7e-106 390.2 340 58.5
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.2e-106 389.8 340 58.2
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.2e-106 389.8 341 58.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 2.8e-106 389.4 337 58.5
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 2.8e-106 389.4 337 58.5
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 1.0e-103 380.9 326 58.6
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.3e-103 380.6 337 56.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 8.5e-103 377.9 330 56.7
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 9.7e-99 364.4 328 57.3
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 6.3e-98 361.7 325 57.5
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.1e-97 360.9 268 64.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 2.0e-96 356.7 184 96.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 3.5e-96 355.9 184 96.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 2.9e-95 352.8 330 55.5
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 4.2e-94 349.0 322 54.0
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 5.7e-91 338.6 290 59.3
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.0e-87 325.5 256 62.5
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.0e-80 303.5 334 50.0
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.9e-79 299.7 349 43.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.1e-73 281.2 347 43.2
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 9.2e-65 251.5 336 42.3
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 2.4e-57 226.9 135 87.4
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 3.2e-57 226.5 233 51.1
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.6e-56 224.2 257 49.0
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.7e-56 223.4 174 59.2
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 6.0e-56 222.2 120 93.3
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.2e-53 214.5 154 67.5
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.8e-52 210.7 321 38.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 7.6e-51 205.3 149 69.1
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 6.0e-48 195.7 163 62.6
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 2.4e-44 183.7 329 34.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.1e-40 170.6 144 58.3
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 5.6e-38 162.5 97 75.3
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.0e-36 156.4 146 62.3
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 7.6e-35 152.1 130 60.8
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 7.6e-35 152.1 120 56.7
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 1.9e-33 147.5 149 52.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.4e-33 147.1 99 67.7
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 6.0e-32 142.5 98 70.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 2.3e-31 140.6 98 69.4
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 2.3e-31 140.6 98 69.4
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.6e-29 134.4 165 41.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.7e-29 133.3 186 40.3
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 4.8e-29 132.9 292 30.5
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.8e-27 125.9 171 42.1
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-25 121.7 84 69.0
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-25 121.7 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.1e-24 117.5 180 40.6
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.0e-23 113.6 213 37.1
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.1e-23 112.8 141 48.9
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.6e-21 107.8 136 51.5
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.3e-18 98.2 110 45.5
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-17 95.1 48 91.7
C04p54390 Brassica napus HOM05D004841 ORTHO05D005874 5.7e-14 82.8 56 78.6
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 5.7e-14 82.8 99 47.5
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 5.3e-12 76.3 135 40.7
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 4.5e-11 73.2 82 50.0
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 5.5e-09 66.2 130 41.5
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.7e-08 63.9 46 63.0
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 2.3e-07 60.8 119 41.2
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.3e-06 57.0 232 30.6


User provided reference genes

Program Settings