Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-175 619.4 317 100.0
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 2.5e-117 426.0 308 75.0
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 2.8e-116 422.5 291 77.0
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.3e-92 344.0 314 63.7
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.0e-90 336.7 312 61.9
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 7.9e-87 324.7 317 58.7
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.3e-86 323.2 309 58.9
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.9e-85 320.1 271 66.8
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.7e-81 307.0 324 55.2
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 6.4e-81 305.1 324 56.8
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.4e-80 303.1 317 54.6
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.6e-79 300.4 318 53.8
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.6e-79 298.9 316 53.8
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 7.9e-79 298.1 315 52.4
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.3e-78 297.4 316 53.5
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 2.3e-78 296.6 319 52.7
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.9e-77 293.5 318 51.3
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.1e-75 286.2 187 78.1
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.4e-73 278.1 319 51.1
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.0e-70 271.2 315 49.5
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 3.7e-68 262.7 315 48.9
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 3.7e-68 262.7 315 48.9
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-67 261.2 315 48.6
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.8e-67 260.4 315 52.4
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 1.0e-65 254.6 316 48.1
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 1.3e-65 254.2 316 48.1
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 9.3e-64 248.1 316 48.4
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 9.3e-64 248.1 317 48.3
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-63 245.7 316 48.1
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.8e-62 243.8 318 46.5
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 1.1e-61 241.1 316 47.2
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-60 237.7 316 45.9
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 6.3e-60 235.3 317 43.5
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 5.3e-59 232.3 307 46.9
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 4.5e-58 229.2 317 43.2
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 5.0e-57 225.7 317 42.9
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-56 223.8 316 44.9
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 3.2e-56 223.0 315 41.6
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 6.1e-55 218.8 316 41.5
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.8e-54 217.2 320 40.6
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 5.1e-54 215.7 316 40.8
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.1e-53 214.5 316 40.8
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.5e-53 214.2 317 38.8
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 4.4e-53 212.6 316 39.6
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 5.7e-53 212.2 320 41.9
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 5.7e-53 212.2 316 41.8
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 9.7e-53 211.5 313 41.5
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.3e-52 211.1 320 39.7
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.7e-52 210.7 314 40.4
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 2.2e-52 210.3 314 40.4
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 2.8e-52 209.9 316 41.8
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 2.8e-52 209.9 322 41.0
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 4.8e-52 209.1 319 39.2
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 4.8e-52 209.1 319 40.1
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.2e-52 208.4 320 40.6
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.1e-51 208.0 305 42.0
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 1.4e-51 207.6 312 40.4
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.4e-51 207.6 319 38.9
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.8e-51 207.2 315 41.6
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-51 206.8 151 73.5
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 6.9e-51 205.3 313 41.5
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 1.5e-50 204.1 322 41.6
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.6e-50 203.4 322 39.4
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 3.4e-50 203.0 319 39.8
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 3.4e-50 203.0 320 38.1
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.5e-50 202.6 317 39.1
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 4.5e-50 202.6 327 38.8
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 4.5e-50 202.6 327 38.8
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 4.5e-50 202.6 318 40.3
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.9e-50 202.2 316 41.8
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 5.9e-50 202.2 319 42.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 5.9e-50 202.2 318 40.3
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 5.9e-50 202.2 313 38.7
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 5.9e-50 202.2 319 37.6
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 7.7e-50 201.8 322 39.1
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 1.0e-49 201.4 315 41.3
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 1.3e-49 201.1 315 38.7
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.3e-49 201.1 327 38.5
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 1.7e-49 200.7 319 39.2
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 2.2e-49 200.3 322 38.8
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 2.9e-49 199.9 322 37.9
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 3.8e-49 199.5 298 42.6
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 6.5e-49 198.7 319 40.4
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 8.5e-49 198.4 341 38.7
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.4e-48 197.6 317 38.2
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.9e-48 197.2 317 38.5
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 5.5e-48 195.7 316 40.8
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 9.4e-48 194.9 319 38.6
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 9.4e-48 194.9 319 38.9
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 9.4e-48 194.9 307 39.1
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-47 194.5 313 43.5
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.6e-47 194.1 323 37.2
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.6e-47 194.1 320 38.4
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 4.7e-47 192.6 341 38.4
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 7.9e-47 191.8 318 38.7
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 7.9e-47 191.8 298 39.3
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 3.9e-46 189.5 357 33.1
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 5.2e-46 189.1 314 37.6
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 3.3e-45 186.4 321 36.4
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 2.8e-44 183.3 324 37.0
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 1.1e-43 181.4 373 33.8
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 3.1e-43 179.9 320 38.8
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 5.3e-43 179.1 319 35.7
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.2e-42 177.9 395 30.4
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 4.5e-42 176.0 244 43.4
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 7.7e-42 175.3 324 39.2
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.7e-41 174.1 334 34.1
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 2.2e-41 173.7 324 38.6
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.1e-40 171.4 407 29.2
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 2.5e-40 170.2 415 28.4
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.2e-39 167.9 421 28.0
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.7e-39 166.8 277 41.5
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.7e-39 166.8 323 35.6
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.7e-39 166.0 315 34.9
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 6.1e-39 165.6 311 36.3
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 6.1e-39 165.6 327 35.2
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 6.1e-39 165.6 323 37.8
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 4.0e-38 162.9 300 36.3
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.2e-37 161.4 317 33.1
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.0e-37 160.6 326 33.1
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 4.4e-37 159.5 223 42.2
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 9.7e-37 158.3 314 35.7
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 9.7e-37 158.3 332 34.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 1.3e-36 157.9 322 34.2
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.7e-36 157.5 335 36.1
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 3.7e-36 156.4 298 35.6
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.3e-36 155.6 320 34.7
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.2e-36 155.2 320 34.7
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.1e-35 154.8 320 34.4
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.4e-35 154.5 320 34.1
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 3.1e-35 153.3 320 34.4
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.1e-35 153.3 320 34.4
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 7.0e-35 152.1 327 33.3
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.7e-34 150.2 302 34.4
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 3.5e-34 149.8 333 33.3
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.0e-33 148.3 337 30.0
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 6.5e-33 145.6 319 32.9
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 1.9e-32 144.1 329 32.5
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 2.5e-32 143.7 348 33.3
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.2e-32 143.3 266 38.3
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-31 141.4 306 33.0
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 6.1e-31 139.0 355 28.5
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 8.0e-31 138.7 252 36.1
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 2.2e-28 130.6 250 36.0
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.2e-28 130.6 322 31.4
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.4e-27 125.9 297 29.3
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.4e-27 125.9 297 29.3
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 7.0e-27 125.6 237 32.9
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.6e-25 118.6 151 45.0
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 8.6e-25 118.6 347 28.5
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.5e-24 117.9 176 40.9
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 5.5e-24 115.9 352 26.7
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 1.2e-23 114.8 346 28.0
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.6e-23 114.4 313 32.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-23 114.4 370 27.0
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.6e-23 114.4 370 27.0
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 4.0e-22 109.8 170 40.0
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.4e-21 106.7 74 75.7
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 7.5e-21 105.5 171 38.0
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 3.7e-20 103.2 338 26.3
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.6e-17 92.0 153 36.6
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 9.5e-16 88.6 370 23.5
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.8e-14 84.3 116 41.4
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 2.3e-14 84.0 196 33.7
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 8.9e-14 82.0 155 36.8
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 3.2e-11 73.6 103 35.9
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 8.6e-09 65.5 128 31.2
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 1.9e-08 64.3 403 21.8


User provided reference genes

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