Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 4.8e-97 357.8 181 100.0
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 1.7e-38 163.3 400 34.5
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 2.3e-38 162.9 400 34.5
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 2.3e-38 162.9 400 34.5
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 2.3e-38 162.9 400 34.5
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 2.9e-38 162.5 400 34.5
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 3.9e-38 162.2 400 34.5
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 3.9e-38 162.2 400 34.5
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 8.6e-38 161.0 400 34.2
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 1.1e-37 160.6 400 34.2
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 1.1e-37 160.6 400 34.2
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 1.1e-37 160.6 400 34.2
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 2.5e-37 159.5 400 34.0
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 2.5e-37 159.5 376 34.3
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 3.3e-37 159.1 400 34.0
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 6.1e-36 154.8 174 54.0
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 4.0e-35 152.1 400 32.5
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 4.0e-35 152.1 400 32.5
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 5.2e-35 151.8 400 32.8
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 5.2e-35 151.8 400 32.8
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 5.2e-35 151.8 400 33.0
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 6.8e-35 151.4 400 32.8
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 8.9e-35 151.0 400 32.5
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 1.2e-34 150.6 400 32.5
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 1.2e-34 150.6 400 32.5
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 1.2e-34 150.6 400 32.2
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 1.2e-34 150.6 400 32.5
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 1.5e-34 150.2 400 32.2
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.5e-34 150.2 400 32.5
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 1.5e-34 150.2 400 32.5
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 1.5e-34 150.2 400 32.8
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 2.0e-34 149.8 400 32.5
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.6e-34 149.4 405 32.6
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 2.6e-34 149.4 400 32.2
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 2.6e-34 149.4 400 32.5
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 2.6e-34 149.4 352 34.1
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 3.4e-34 149.1 400 32.0
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 3.4e-34 149.1 400 32.0
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 3.4e-34 149.1 400 32.0
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 3.4e-34 149.1 400 32.0
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 3.4e-34 149.1 400 32.2
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 4.4e-34 148.7 400 32.0
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 4.4e-34 148.7 400 32.0
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.4e-34 148.7 400 32.2
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 4.4e-34 148.7 400 32.5
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 4.4e-34 148.7 400 32.2
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 5.8e-34 148.3 400 32.0
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 5.8e-34 148.3 400 32.0
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 5.8e-34 148.3 405 32.6
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 5.8e-34 148.3 400 32.5
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 5.8e-34 148.3 400 32.0
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 5.8e-34 148.3 384 32.3
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 5.8e-34 148.3 400 32.0
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 9.8e-34 147.5 400 31.8
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.3e-33 147.1 395 32.4
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 1.3e-33 147.1 400 32.2
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 1.3e-33 147.1 400 31.8
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 1.7e-33 146.7 400 31.8
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.9e-33 146.0 400 31.8
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 2.9e-33 146.0 400 32.0
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.9e-33 146.0 402 31.6
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 2.9e-33 146.0 400 31.8
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 4.9e-33 145.2 248 40.7
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 4.9e-33 145.2 400 31.5
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 4.9e-33 145.2 395 32.4
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 6.4e-33 144.8 400 32.0
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 8.3e-33 144.4 400 31.5
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 1.9e-32 143.3 248 40.7
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 1.9e-32 143.3 400 31.2
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 2.4e-32 142.9 400 31.2
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 2.4e-32 142.9 400 31.2
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 3.2e-32 142.5 406 31.8
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 3.2e-32 142.5 400 31.2
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 3.2e-32 142.5 400 31.2
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 3.2e-32 142.5 399 31.1
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 4.1e-32 142.1 400 31.2
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 4.1e-32 142.1 248 39.9
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 7.0e-32 141.4 400 31.0
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 9.2e-32 141.0 395 31.6
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 2.0e-31 139.8 405 31.6
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 3.5e-31 139.0 248 39.1
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 3.5e-31 139.0 248 39.1
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 7.8e-31 137.9 405 30.9
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 7.8e-31 137.9 345 35.1
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 1.0e-30 137.5 148 53.4
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 1.0e-30 137.5 248 38.7
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.3e-30 137.1 248 38.7
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.3e-30 137.1 248 38.7
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.7e-30 136.7 400 31.2
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 3.0e-30 136.0 248 38.3
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 3.0e-30 136.0 248 38.7
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 3.9e-30 135.6 248 38.3
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 5.0e-30 135.2 398 30.7
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 5.0e-30 135.2 248 38.7
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 5.0e-30 135.2 248 38.7
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 8.6e-30 134.4 248 38.7
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.1e-29 134.0 248 38.3
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 1.1e-29 134.0 248 37.9
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 1.1e-29 134.0 248 38.3
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 2.5e-29 132.9 403 30.3
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 3.3e-29 132.5 395 30.1
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 4.3e-29 132.1 248 37.9
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 4.3e-29 132.1 433 29.8
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 5.6e-29 131.7 248 37.5
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 9.5e-29 131.0 388 30.2
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 9.5e-29 131.0 248 38.7
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 1.2e-28 130.6 248 37.5
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.2e-28 130.6 400 30.2
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 6.2e-28 128.3 174 47.7
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 6.2e-28 128.3 248 37.1
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 8.0e-28 127.9 111 60.4
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.4e-27 127.1 400 29.8
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 1.8e-27 126.7 118 58.5
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 2.3e-27 126.3 248 35.9
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 3.1e-27 125.9 248 36.3
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 4.0e-27 125.6 254 37.4
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 4.0e-27 125.6 248 37.5
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 5.2e-27 125.2 400 28.5
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 5.2e-27 125.2 400 28.5
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 8.9e-27 124.4 393 29.3
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 1.2e-26 124.0 248 37.1
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.2e-25 119.8 254 35.8
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.2e-25 119.8 254 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 3.7e-25 119.0 111 57.7
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 4.9e-25 118.6 111 58.6
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 4.1e-24 115.5 254 35.0
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 9.2e-24 114.4 359 31.5
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.5e-23 112.5 287 31.0
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 1.0e-22 110.9 117 52.1
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 3.0e-22 109.4 491 26.3
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 5.6e-21 105.1 111 52.3
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.2e-20 104.0 111 54.1
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 2.3e-19 99.8 111 48.6
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.0e-19 99.0 248 32.7
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 8.9e-19 97.8 127 48.8
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 1.3e-17 94.0 109 47.7
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.2e-17 93.2 111 47.7
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 6.4e-17 91.7 109 47.7
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 4.6e-15 85.5 106 47.2
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 6.0e-15 85.1 111 41.4
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 1.3e-14 84.0 204 36.8
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 2.3e-14 83.2 204 36.8
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 6.6e-14 81.6 73 58.9
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 8.6e-14 81.3 205 32.7
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.1e-13 80.9 73 60.3
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.5e-13 80.5 74 56.8
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 1.9e-13 80.1 102 43.1
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 1.2e-12 77.4 132 42.4
CSS0026740 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.6e-12 77.0 59 66.1
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 8.1e-12 74.7 75 50.7
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.4e-11 73.9 89 48.3
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 3.1e-11 72.8 78 48.7
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 7.6e-10 68.2 327 25.4
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.2e-09 66.6 111 31.5
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 2.2e-09 66.6 328 25.0
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.1e-08 61.6 73 47.9
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 1.2e-07 60.8 203 29.1
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 4.6e-07 58.9 80 36.2


User provided reference genes

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