Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.7e-129 466.1 248 100.0
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 4.9e-92 341.7 286 67.5
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.8e-91 339.7 286 67.1
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 2.4e-91 339.3 286 67.1
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 3.1e-91 339.0 286 67.1
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.2e-90 337.0 286 66.8
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 3.5e-90 335.5 286 66.8
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 3.5e-90 335.5 284 67.3
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 4.5e-90 335.1 286 66.1
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 5.9e-90 334.7 283 66.8
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.0e-89 334.0 286 66.4
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-89 333.6 283 66.8
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-89 333.6 283 66.8
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-89 333.6 282 66.7
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.3e-89 333.6 283 66.8
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 3.8e-89 332.0 283 66.4
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 3.8e-89 332.0 283 66.4
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.5e-88 330.1 279 66.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.5e-88 330.1 279 66.7
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 7.3e-88 327.8 286 65.0
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 5.8e-85 318.2 282 63.8
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 7.5e-85 317.8 256 68.8
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.9e-84 315.1 287 62.7
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 2.4e-83 312.8 282 62.8
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 4.1e-83 312.0 282 63.1
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 5.4e-83 311.6 286 62.2
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 7.0e-83 311.2 282 62.1
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-82 310.5 226 72.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 2.7e-82 309.3 285 61.8
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.3e-81 307.0 285 61.1
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.7e-81 306.6 285 61.1
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.7e-81 306.6 285 61.8
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 2.3e-81 306.2 282 62.4
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.3e-81 306.2 284 62.0
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 3.9e-81 305.4 284 62.0
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 6.6e-81 304.7 286 60.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 8.6e-81 304.3 282 61.0
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.1e-80 303.9 226 70.4
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.1e-80 303.9 226 70.4
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.1e-80 303.9 285 60.0
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.1e-80 303.9 285 60.0
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.5e-80 303.5 285 61.8
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.5e-80 303.5 285 61.1
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.9e-80 303.1 285 60.7
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.9e-80 303.1 285 60.4
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 2.5e-80 302.8 285 60.7
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.5e-80 302.8 285 61.4
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.5e-80 302.8 285 61.4
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 3.3e-80 302.4 286 60.5
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-80 302.0 285 61.1
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 4.3e-80 302.0 285 61.1
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 7.3e-80 301.2 286 60.8
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.2e-79 300.4 282 60.3
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.6e-79 300.1 285 61.1
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.6e-79 300.1 283 59.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 2.1e-79 299.7 285 60.4
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.1e-79 299.7 282 60.3
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.1e-79 299.7 285 60.4
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 2.8e-79 299.3 200 76.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.8e-79 299.3 285 59.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.6e-79 298.9 284 59.9
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 3.6e-79 298.9 286 59.1
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.6e-79 298.9 282 59.2
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 4.7e-79 298.5 226 69.0
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.7e-79 298.5 291 60.5
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 6.2e-79 298.1 285 58.9
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 8.0e-79 297.7 284 60.2
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 8.0e-79 297.7 284 60.2
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 8.0e-79 297.7 282 59.9
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.4e-78 297.0 285 59.6
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.8e-78 296.6 286 60.5
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.8e-78 296.6 285 59.6
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.8e-78 296.6 284 60.6
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 3.1e-78 295.8 226 69.5
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.1e-78 295.8 284 59.9
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 4.0e-78 295.4 226 68.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.0e-78 295.4 226 68.6
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 5.2e-78 295.0 285 59.6
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 5.2e-78 295.0 284 59.5
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 6.8e-78 294.7 283 60.1
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 8.9e-78 294.3 285 59.6
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.2e-77 293.9 285 59.6
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.2e-77 293.9 283 60.1
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.0e-77 293.1 225 67.6
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 2.6e-77 292.7 285 59.3
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.6e-77 292.7 200 75.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.4e-77 292.4 285 58.9
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 3.4e-77 292.4 226 69.0
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.4e-77 292.0 285 59.3
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 4.4e-77 292.0 226 68.1
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 5.8e-77 291.6 285 59.3
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 7.5e-77 291.2 285 58.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.3e-76 290.4 285 58.6
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.2e-76 289.7 285 58.9
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.2e-76 289.7 285 58.9
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.2e-76 289.7 226 67.7
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 6.4e-76 288.1 282 59.6
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 8.3e-76 287.7 226 67.3
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.3e-76 287.7 243 67.1
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.1e-75 287.3 284 58.5
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.9e-75 286.6 226 66.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 4.1e-75 285.4 226 65.9
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 4.1e-75 285.4 282 59.6
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 4.1e-75 285.4 275 59.6
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 5.4e-75 285.0 226 65.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 2.1e-74 283.1 286 57.3
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 3.5e-74 282.3 286 57.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 6.0e-74 281.6 285 56.5
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 6.0e-74 281.6 285 56.5
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.3e-73 280.4 268 58.6
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 6.6e-73 278.1 275 57.1
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.5e-72 276.9 226 63.7
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.9e-72 276.6 282 57.1
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.3e-72 275.4 269 59.9
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 5.6e-72 275.0 282 58.2
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 7.3e-72 274.6 336 50.6
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 8.1e-71 271.2 267 59.2
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 5.8e-69 265.0 224 61.6
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 8.3e-68 261.2 226 59.3
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 8.3e-68 261.2 226 59.3
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.9e-67 260.0 224 62.1
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.4e-67 259.6 226 59.3
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 9.2e-67 257.7 324 51.2
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 5.1e-65 251.9 226 57.5
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 6.6e-65 251.5 289 55.0
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 8.9e-62 241.1 194 68.6
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 9.9e-61 237.7 204 63.2
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 6.4e-60 235.0 201 63.2
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 3.2e-59 232.6 226 60.6
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 6.0e-58 228.4 224 55.8
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 8.7e-57 224.6 287 49.5
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.9e-56 223.4 224 54.5
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.3e-56 222.6 226 56.2
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.5e-53 213.8 286 48.6
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.1e-51 207.6 175 66.3
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.4e-51 207.2 268 48.9
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-50 204.1 205 58.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 4.3e-48 195.7 122 80.3
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 7.3e-48 194.9 241 46.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 1.1e-46 191.0 166 65.1
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.4e-46 190.7 165 64.8
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 6.9e-46 188.3 164 64.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.4e-43 180.6 236 42.4
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.9e-43 180.3 121 78.5
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 3.0e-41 172.9 94 90.4
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.1e-38 164.5 166 60.2
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 7.1e-35 151.8 139 62.6
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.5e-32 143.3 142 46.5
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.1e-31 140.2 194 41.8
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.5e-24 117.5 126 52.4
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-24 117.5 86 72.1
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.9e-24 117.1 139 50.4
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.8e-23 113.2 61 85.2
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 6.5e-20 102.1 88 65.9
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.1e-19 101.3 78 73.1
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 2.5e-16 90.1 48 83.3
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 5.7e-16 89.0 46 87.0
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 6.5e-12 75.5 125 45.6
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 4.7e-10 69.3 42 73.8
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.6e-08 63.5 49 71.4
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.6e-08 63.5 49 71.4
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.3e-08 63.2 49 71.4
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.7e-08 61.6 49 69.4
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.7e-07 60.8 49 69.4
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.2e-07 60.5 49 69.4
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.3e-06 55.8 49 61.2


User provided reference genes

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