Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1573.1 861 100.0
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 0.0e+00 1406.7 858 90.1
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 0.0e+00 1387.5 885 85.2
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1383.2 863 89.3
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 0.0e+00 1360.1 873 87.1
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 0.0e+00 1341.6 887 85.6
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 0.0e+00 1266.1 862 81.8
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1201.4 851 78.4
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1179.9 856 76.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 0.0e+00 1168.7 857 74.7
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1165.6 848 77.0
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 0.0e+00 1147.1 858 76.1
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 0.0e+00 1129.4 872 72.7
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.2e-292 1008.4 822 70.9
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-290 1003.4 858 68.5
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 5.9e-286 987.6 865 67.5
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.0e-285 986.9 845 67.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.3e-281 971.5 857 64.8
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-276 956.4 843 65.1
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 2.8e-264 915.6 851 62.7
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.2e-239 832.4 742 66.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 5.6e-220 768.5 891 50.7
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 3.4e-217 759.2 909 52.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.3e-216 757.3 892 51.1
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 2.3e-213 746.5 863 51.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 5.1e-213 745.3 879 51.3
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 2.5e-212 743.0 884 50.2
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 2.1e-211 740.0 882 49.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.6e-211 739.2 884 53.5
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.7e-211 738.8 898 53.1
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.4e-210 736.5 880 51.8
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 6.8e-210 734.9 881 52.1
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 2.9e-208 729.6 857 52.4
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 4.9e-208 728.8 903 49.9
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.9e-207 726.9 892 50.0
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 7.1e-207 724.9 898 51.1
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 2.1e-206 723.4 885 50.7
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 7.8e-206 721.5 878 51.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 6.6e-205 718.4 887 49.4
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.5e-204 717.2 891 50.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.9e-204 716.8 885 49.2
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.6e-203 713.8 877 50.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.6e-203 712.6 896 50.4
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.4e-201 706.1 909 49.0
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 5.8e-201 705.3 888 49.0
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.3e-200 704.1 879 49.8
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.7e-200 703.7 877 48.9
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 2.9e-200 703.0 870 49.3
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.9e-200 702.2 873 49.8
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.9e-199 700.3 906 49.4
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.7e-198 696.4 879 48.8
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.5e-198 696.0 860 48.4
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 7.8e-198 694.9 875 48.1
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 1.3e-197 694.1 832 51.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.3e-197 693.3 846 50.5
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.9e-196 690.3 885 48.5
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 2.5e-196 689.9 879 48.9
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 3.3e-196 689.5 863 49.0
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 5.6e-196 688.7 879 47.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 6.2e-195 685.3 806 52.4
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 2.0e-193 680.2 876 50.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.4e-193 679.5 866 48.5
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 5.8e-193 678.7 876 47.9
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 7.6e-193 678.3 888 47.6
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 9.9e-193 677.9 868 47.8
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 6.4e-192 675.2 894 47.4
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.9e-191 673.7 860 49.8
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 3.0e-189 666.4 889 48.0
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 6.7e-189 665.2 913 48.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 4.3e-188 662.5 883 47.1
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.3e-187 661.0 887 47.6
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.6e-187 660.6 889 46.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.8e-187 659.1 879 48.4
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 6.2e-187 658.7 883 49.0
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.1e-186 657.9 869 48.8
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.4e-186 656.8 827 49.2
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.4e-186 656.8 894 49.1
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.2e-185 654.4 888 48.1
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.0e-184 651.4 815 50.9
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.7e-184 650.6 900 47.9
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.2e-184 650.2 897 48.2
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 2.2e-184 650.2 899 47.1
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 3.8e-184 649.4 876 49.0
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.4e-183 647.5 869 48.0
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.2e-183 646.4 886 47.4
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.6e-182 644.0 883 49.2
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.8e-181 640.6 872 46.7
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.3e-181 640.2 915 45.0
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 5.1e-181 639.0 862 47.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.7e-181 638.3 867 47.5
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 6.2e-179 632.1 878 49.2
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 6.2e-179 632.1 878 49.2
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 8.2e-179 631.7 881 47.2
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.9e-176 623.2 828 48.3
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 5.0e-176 622.5 856 46.8
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.2e-175 619.8 825 47.3
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.5e-174 616.3 834 47.2
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 6.1e-174 615.5 864 47.5
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.8e-173 614.0 883 46.0
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 3.0e-173 613.2 874 46.5
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.8e-170 604.0 732 48.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.0e-168 598.2 876 45.0
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 2.2e-168 597.0 860 47.0
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 5.0e-168 595.9 919 42.8
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.1e-166 590.5 875 45.4
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 8.8e-165 585.1 839 43.7
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 5.7e-164 582.4 861 45.9
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.3e-163 581.3 885 42.1
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 4.1e-162 576.2 888 42.7
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.0e-160 571.6 776 47.6
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.1e-159 568.2 858 45.7
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.1e-156 558.1 876 41.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-152 544.7 740 45.9
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 4.0e-149 533.1 765 45.5
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-148 531.6 401 77.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 8.5e-144 515.4 383 77.8
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 9.4e-143 511.9 383 77.5
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 9.4e-143 511.9 392 76.8
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.2e-142 511.5 609 48.1
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-140 505.0 862 41.2
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-139 501.1 345 81.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.2e-132 478.4 574 52.1
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 3.1e-130 470.3 382 73.0
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.6e-129 468.0 640 47.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.6e-126 458.0 638 46.6
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 9.2e-122 442.2 1074 34.6
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 5.0e-120 436.4 848 40.0
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.7e-118 429.9 346 72.0
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 5.2e-117 426.4 287 83.3
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.6e-108 397.5 291 78.4
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 5.4e-106 389.8 819 36.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 8.6e-104 382.5 435 51.3
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 6.8e-101 372.9 895 33.1
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 4.9e-99 366.7 408 53.2
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.4e-98 364.4 1049 32.6
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 5.6e-95 353.2 290 73.8
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.7e-94 350.1 291 73.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 4.3e-87 327.0 446 48.2
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 3.6e-86 323.9 289 68.5
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 4.4e-84 317.0 289 67.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 9.3e-82 309.3 984 30.1
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.6e-78 297.4 911 31.9
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 9.0e-77 292.7 467 41.8
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-70 272.3 168 87.5
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.3e-70 272.3 332 46.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-69 268.9 249 56.6
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-68 265.4 160 89.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.0e-67 262.7 976 28.0
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.3e-67 262.3 307 48.2
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.1e-66 259.2 325 46.5
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.2e-60 239.2 712 30.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 6.5e-59 233.4 197 61.4
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.2e-58 231.1 244 54.1
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 1.6e-54 218.8 717 28.9
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.5e-52 210.7 314 45.2
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 4.7e-41 174.1 452 33.0
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.1e-41 173.7 174 59.8
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.1e-41 173.7 176 58.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.9e-36 157.1 222 45.5
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.5e-34 151.8 194 46.9
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 8.0e-33 146.7 681 26.1
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 8.8e-32 143.3 151 54.3
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-31 142.9 295 37.3
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 8.5e-27 126.7 155 43.2
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.6e-25 122.5 129 48.1
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.7e-25 121.7 233 36.5
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.6e-25 121.3 184 44.6
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.3e-24 118.6 127 54.3
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.4e-21 108.6 122 53.3
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.6e-20 105.9 967 22.2
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 5.2e-16 90.9 57 84.2
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 1.3e-11 76.3 51 80.4
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.5e-10 72.8 82 51.2
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 6.1e-09 67.4 209 24.4
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 6.1e-09 67.4 38 84.2
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 3.7e-06 58.2 275 28.7
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 8.3e-06 57.0 82 46.3


User provided reference genes

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