Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23502 Brassica carinata HOM05D000091 ORTHO05D090849 1.3e-31 139.0 69 100.0
BcaB04g19967 Brassica carinata HOM05D000091 ORTHO05D004126 1.5e-30 135.6 69 97.1
Sp2g27390 Schrenkiella parvula HOM05D000091 ORTHO05D004126 2.1e-24 115.2 69 87.0
BcaC04g23322 Brassica carinata HOM05D000091 ORTHO05D004126 4.6e-24 114.0 71 83.1
C09p09740 Brassica napus HOM05D000091 ORTHO05D004126 4.6e-24 114.0 71 83.1
BolC9t53885H Brassica oleracea HOM05D000091 ORTHO05D004126 4.6e-24 114.0 71 83.1
A09p08630 Brassica napus HOM05D000091 ORTHO05D004126 3.0e-23 111.3 71 83.1
BraA09t36512Z Brassica rapa HOM05D000091 ORTHO05D004126 3.0e-23 111.3 71 83.1
BraA06t26042Z Brassica rapa HOM05D000091 ORTHO05D004126 1.1e-22 109.4 69 82.6
A06p31000 Brassica napus HOM05D000091 ORTHO05D004126 3.3e-22 107.8 69 81.2
BcaC01g06906 Brassica carinata HOM05D000091 ORTHO05D004126 5.6e-22 107.1 69 81.2
C03p61960 Brassica napus HOM05D000091 ORTHO05D004126 5.6e-22 107.1 69 81.2
BolC3t18455H Brassica oleracea HOM05D000091 ORTHO05D004126 5.6e-22 107.1 69 81.2
Thhalv10003710m.g Eutrema salsugineum HOM05D000091 ORTHO05D004126 7.3e-22 106.7 70 81.4
AT5G64330 Arabidopsis thaliana HOM05D000091 ORTHO05D004126 4.4e-19 97.4 70 74.3
CARHR278260 Cardamine hirsuta HOM05D000091 ORTHO05D004126 5.8e-19 97.1 70 77.1
AL8G41690 Arabidopsis lyrata HOM05D000091 ORTHO05D004126 9.9e-19 96.3 70 72.9
Carub.0008s2512 Capsella rubella HOM05D000091 ORTHO05D004126 2.4e-17 91.7 71 73.2
Aa31LG1G17570 Aethionema arabicum HOM05D000091 ORTHO05D004126 7.1e-17 90.1 74 71.6
THA.LOC104799835 Tarenaya hassleriana HOM05D000091 ORTHO05D004126 1.0e-15 86.3 69 65.2
BcaB05g23501 Brassica carinata HOM05D000091 ORTHO05D093666 3.6e-13 77.8 39 100.0
Sc14g0003430 Simmondsia chinensis HOM05D000091 ORTHO05D004126 9.0e-12 73.2 70 60.0
Aqoxy6G01465 Aquilegia oxysepala HOM05D000091 ORTHO05D004126 3.4e-11 71.2 69 59.4
Gohir.D02G199600 Gossypium hirsutum HOM05D000091 ORTHO05D004126 3.4e-11 71.2 69 58.0
Eucgr.G00960 Eucalyptus grandis HOM05D000091 ORTHO05D004126 9.9e-11 69.7 69 59.4
Prupe.8G067500 Prunus persica HOM05D000091 ORTHO05D004126 9.9e-11 69.7 69 56.5
COL.COLO4_32355 Corchorus olitorius HOM05D000091 ORTHO05D004126 1.3e-10 69.3 69 59.4
Gohir.D13G051200 Gossypium hirsutum HOM05D000091 ORTHO05D004126 1.3e-10 69.3 70 60.0
Gorai.013G057300 Gossypium raimondii HOM05D000091 ORTHO05D004126 1.3e-10 69.3 70 60.0
MBI06_g42715_MAGBIO Magnolia biondii HOM05D000091 ORTHO05D004126 1.3e-10 69.3 69 58.0
Peaxi162Scf00299g00849 Petunia axillaris HOM05D000091 ORTHO05D004126 1.3e-10 69.3 69 56.5
Manes.07G037100 Manihot esculenta HOM05D000091 ORTHO05D004126 1.7e-10 68.9 69 53.6
CANSAT11G0467 Cannabis sativa HOM05D000091 ORTHO05D004126 2.2e-10 68.6 69 52.2
ClCG10G009530 Citrullus lanatus HOM05D000091 ORTHO05D004126 2.2e-10 68.6 69 58.0
Migut.B00566 Erythranthe guttata HOM05D000091 ORTHO05D004126 2.2e-10 68.6 72 59.7
Gorai.005G224200 Gossypium raimondii HOM05D000091 ORTHO05D004126 2.2e-10 68.6 69 58.0
Hma1.2p1_1093F.1_g256080 Hydrangea macrophylla HOM05D000091 ORTHO05D004126 2.2e-10 68.6 69 56.5
Actinidia24014 Actinidia chinensis HOM05D000091 ORTHO05D004126 2.9e-10 68.2 69 56.5
Ciclev10004479m.g Citrus clementina HOM05D000091 ORTHO05D004126 3.8e-10 67.8 69 55.1
Gohir.A03G175800 Gossypium hirsutum HOM05D000091 ORTHO05D004126 3.8e-10 67.8 69 56.5
Nitab4.5_0008998g0040 Nicotiana tabacum HOM05D000091 ORTHO05D004126 3.8e-10 67.8 69 55.1
Thecc.02G132200 Theobroma cacao HOM05D000091 ORTHO05D004126 3.8e-10 67.8 69 56.5
TAR381G1115 Trochodendron aralioides HOM05D000091 ORTHO05D004126 3.8e-10 67.8 69 55.1
GSVIVG01012508001 Vitis vinifera HOM05D000091 ORTHO05D004126 3.8e-10 67.8 69 58.0
Gohir.A13G070500 Gossypium hirsutum HOM05D000091 ORTHO05D004126 4.9e-10 67.4 70 60.0
PGR042G2747 Punica granatum HOM05D000091 ORTHO05D004126 6.4e-10 67.0 70 54.3
Atru.chr6.1227 Acer truncatum HOM05D000091 ORTHO05D004126 8.4e-10 66.6 69 55.1
ClCG09G015920 Citrullus lanatus HOM05D000091 ORTHO05D004126 8.4e-10 66.6 70 60.0
Haze_10555 Corylus avellana HOM05D000091 ORTHO05D004126 8.4e-10 66.6 69 58.0
TAR625G0011 Trochodendron aralioides HOM05D000091 ORTHO05D004126 8.4e-10 66.6 69 53.6
Duzib132G1054 Durio zibethinus HOM05D000091 ORTHO05D004126 1.1e-09 66.2 69 58.0
Dinv15986 Davidia involucrata HOM05D000091 ORTHO05D004126 1.9e-09 65.5 69 55.1
Nitab4.5_0000313g0110 Nicotiana tabacum HOM05D000091 ORTHO05D004126 1.9e-09 65.5 69 53.6
Duzib248G0007 Durio zibethinus HOM05D000091 ORTHO05D004126 2.4e-09 65.1 69 53.6
CsaV3_7G007040 Cucumis sativus L. HOM05D000091 ORTHO05D004126 3.2e-09 64.7 70 57.1
PSO541G1389 Papaver somniferum HOM05D000091 ORTHO05D004126 3.2e-09 64.7 69 55.1
Cfa005694 Carpinus fangiana HOM05D000091 ORTHO05D004126 4.2e-09 64.3 69 58.0
CiPaw.05G031300 Carya illinoinensis HOM05D000091 ORTHO05D004126 4.2e-09 64.3 69 56.5
Nitab4.5_0002650g0080 Nicotiana tabacum HOM05D000091 ORTHO05D004126 4.2e-09 64.3 69 53.6
PSO675G8640 Papaver somniferum HOM05D000091 ORTHO05D004126 4.2e-09 64.3 69 55.1
MELO3C018590.2 Cucumis melo HOM05D000091 ORTHO05D004126 5.4e-09 63.9 69 55.1
RcHm_v2.0_Chr6g0271301 Rosa chinensis HOM05D000091 ORTHO05D004126 5.4e-09 63.9 69 55.1
TAR628G1646 Trochodendron aralioides HOM05D000091 ORTHO05D004126 5.4e-09 63.9 69 55.1
Lj6g0005625 Lotus japonicus HOM05D000091 ORTHO05D004126 7.1e-09 63.5 69 56.5
Nn5g29942 Nelumbo nucifera HOM05D000091 ORTHO05D004126 7.1e-09 63.5 69 50.7
Ca_18371_v3 Cicer arietinum L. HOM05D000091 ORTHO05D004126 9.3e-09 63.2 69 52.2
Lsat_1_v5_gn_7_83740 Lactuca sativa HOM05D000091 ORTHO05D004126 9.3e-09 63.2 69 53.6
Actinidia04401 Actinidia chinensis HOM05D000091 ORTHO05D004126 1.2e-08 62.8 69 56.5
AUR62012898 Chenopodium quinoa HOM05D000091 ORTHO05D004126 1.2e-08 62.8 75 53.3
DCAR_029190 Daucus carota HOM05D000091 ORTHO05D004126 1.2e-08 62.8 69 53.6
MD10G1053800 Malus domestica HOM05D000091 ORTHO05D004126 1.2e-08 62.8 69 55.1
Manes.10G102200 Manihot esculenta HOM05D000091 ORTHO05D004126 1.2e-08 62.8 71 54.9
QL11p023808 Quercus lobata HOM05D000091 ORTHO05D004126 1.2e-08 62.8 68 54.4
TWI59G0183 Tripterygium wilfordii HOM05D000091 ORTHO05D004126 1.2e-08 62.8 69 52.2
vmacro01850 Vaccinium macrocarpon HOM05D000091 ORTHO05D004126 1.2e-08 62.8 68 54.4
MSTRG.16608 Avicennia marina HOM05D000091 ORTHO05D004126 1.6e-08 62.4 69 56.5
AUR62027122 Chenopodium quinoa HOM05D000091 ORTHO05D004126 1.6e-08 62.4 75 53.3
Cc02_g21030 Coffea canephora HOM05D000091 ORTHO05D004126 1.6e-08 62.4 68 52.9
ECA236G2139 Erigeron canadensis HOM05D000091 ORTHO05D004126 1.6e-08 62.4 69 53.6
HanXRQChr11g0333371 Helianthus annuus HOM05D000091 ORTHO05D004126 2.1e-08 62.0 69 53.6
PSO170G4338 Papaver somniferum HOM05D000091 ORTHO05D004126 2.1e-08 62.0 71 56.3
Nn1g05501 Nelumbo nucifera HOM05D000091 ORTHO05D004126 2.7e-08 61.6 69 53.6
Nitab4.5_0001264g0150 Nicotiana tabacum HOM05D000091 ORTHO05D004126 2.7e-08 61.6 69 50.7
SalBow6G1523 Salvia bowleyana HOM05D000091 ORTHO05D004126 3.5e-08 61.2 69 53.6
Sed0026147 Sechium edule HOM05D000091 ORTHO05D004126 3.5e-08 61.2 70 55.7
PGSC0003DMG400033569 Solanum tuberosum HOM05D000091 ORTHO05D004126 3.5e-08 61.2 69 49.3
Migut.N01090 Erythranthe guttata HOM05D000091 ORTHO05D004126 4.6e-08 60.8 71 53.5
TWI23G0226 Tripterygium wilfordii HOM05D000091 ORTHO05D004126 4.6e-08 60.8 69 52.2
CDE10G0964 Ceratophyllum demersum HOM05D000091 ORTHO05D004126 7.9e-08 60.1 69 52.2
Ca_00155_v3 Cicer arietinum L. HOM05D000091 ORTHO05D004126 7.9e-08 60.1 69 52.2
FvH4_5g25720 Fragaria vesca HOM05D000091 ORTHO05D004126 7.9e-08 60.1 70 54.3
FAN04G2272 Fragaria x ananassa HOM05D000091 ORTHO05D004126 7.9e-08 60.1 70 54.3
FAN08G3536 Fragaria x ananassa HOM05D000091 ORTHO05D004126 7.9e-08 60.1 70 54.3
FAN13G2241 Fragaria x ananassa HOM05D000091 ORTHO05D004126 7.9e-08 60.1 70 54.3
FAN18G3787 Fragaria x ananassa HOM05D000091 ORTHO05D004126 7.9e-08 60.1 70 54.3
Medtr4g093850 Medicago truncatula HOM05D000091 ORTHO05D004126 7.9e-08 60.1 70 54.3
Solyc01g105680.4 Solanum lycopersicum HOM05D000091 ORTHO05D004126 7.9e-08 60.1 69 49.3
Glyma.08G069800 Glycine max HOM05D000091 ORTHO05D004126 1.0e-07 59.7 69 49.3
PSO210G2717 Papaver somniferum HOM05D000091 ORTHO05D004126 1.0e-07 59.7 71 54.9
RcHm_v2.0_Chr7g0216061 Rosa chinensis HOM05D000091 ORTHO05D004126 1.0e-07 59.7 70 52.9
Sabra07G0092000 Salix brachista HOM05D000091 ORTHO05D004126 1.0e-07 59.7 69 49.3
Sopen01g048130 Solanum pennellii HOM05D000091 ORTHO05D004126 1.0e-07 59.7 66 50.0
Psat7g100600 Pisum sativum HOM05D000091 ORTHO05D004126 1.8e-07 58.9 69 49.3
Potri.017G048200 Populus trichocarpa HOM05D000091 ORTHO05D004126 1.8e-07 58.9 69 47.8
Hund06155 Selenicereus undatus HOM05D000091 ORTHO05D004126 1.8e-07 58.9 73 53.4
MD05G1047100 Malus domestica HOM05D000091 ORTHO05D004126 2.3e-07 58.5 69 49.3
Ah.01g024040 Amaranthus hybridus HOM05D000091 ORTHO05D004126 3.0e-07 58.2 77 49.4
MELO3C024837.2 Cucumis melo HOM05D000091 ORTHO05D004126 3.9e-07 57.8 55 58.2
ECA234G1085 Erigeron canadensis HOM05D000091 ORTHO05D004126 3.9e-07 57.8 69 47.8
Lj5A232T95 Lonicera japonica HOM05D000091 ORTHO05D004126 3.9e-07 57.8 69 49.3
TPR.G2840 Trifolium pratense HOM05D000091 ORTHO05D004126 3.9e-07 57.8 70 51.4
VMungo0251G1806 Vigna mungo HOM05D000091 ORTHO05D004126 3.9e-07 57.8 69 47.8
Lj4g0014549 Lotus japonicus HOM05D000091 ORTHO05D004126 5.1e-07 57.4 69 52.2
Phvul.002G211400 Phaseolus vulgaris HOM05D000091 ORTHO05D004126 5.1e-07 57.4 69 47.8
Ah.01g007500 Amaranthus hybridus HOM05D000091 ORTHO05D004126 6.7e-07 57.0 78 50.0
ATR0022G045 Amborella trichopoda HOM05D000091 ORTHO05D004126 6.7e-07 57.0 76 50.0
Lalb_Chr20g0122871 Lupinus albus HOM05D000091 ORTHO05D004126 6.7e-07 57.0 69 49.3
Sabra17G0032700 Salix brachista HOM05D000091 ORTHO05D004126 8.7e-07 56.6 70 50.0
Sabra17G0034000 Salix brachista HOM05D000091 ORTHO05D004126 8.7e-07 56.6 70 50.0
SalBow8G5561 Salvia bowleyana HOM05D000091 ORTHO05D004126 8.7e-07 56.6 69 49.3
Lalb_Chr18g0060461 Lupinus albus HOM05D000091 ORTHO05D004126 1.1e-06 56.2 70 50.0
Psat1g214600 Pisum sativum HOM05D000091 ORTHO05D004126 1.1e-06 56.2 71 50.7
Sed0016365 Sechium edule HOM05D000091 ORTHO05D004126 1.1e-06 56.2 55 56.4
TPR.G9484 Trifolium pratense HOM05D000091 ORTHO05D004126 1.1e-06 56.2 72 52.8
MSTRG.27811 Avicennia marina HOM05D000091 ORTHO05D004126 1.5e-06 55.8 69 52.2
CSS0013813 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 1.5e-06 55.8 69 50.7
CSS0047297 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 1.5e-06 55.8 69 50.7
Lj9A348T68 Lonicera japonica HOM05D000091 ORTHO05D004126 1.5e-06 55.8 69 49.3
Peaxi162Scf00003g03341 Petunia axillaris HOM05D000091 ORTHO05D004126 1.5e-06 55.8 70 50.0
RhsimUnG0008300 Rhododendron simsii HOM05D000091 ORTHO05D004126 1.5e-06 55.8 68 48.5
RhsimUnG0106100 Rhododendron simsii HOM05D000091 ORTHO05D004126 1.5e-06 55.8 68 48.5
CsaV3_4G009650 Cucumis sativus L. HOM05D000091 ORTHO05D004126 1.9e-06 55.5 55 56.4
Potri.007G112600 Populus trichocarpa HOM05D000091 ORTHO05D004126 2.5e-06 55.1 69 46.4
arahy.Tifrunner.gnm1.ann1.4T09L2 Arachis hypogaea HOM05D000091 ORTHO05D004126 3.3e-06 54.7 69 46.4
arahy.Tifrunner.gnm1.ann1.PKZ6FU Arachis hypogaea HOM05D000091 ORTHO05D004126 3.3e-06 54.7 69 46.4
CDE10G0408 Ceratophyllum demersum HOM05D000091 ORTHO05D004126 4.3e-06 54.3 72 50.0
Oeu022085.1 Olea europaea HOM05D000091 ORTHO05D004126 4.3e-06 54.3 69 47.8
CAN.G523.30 Capsicum annuum HOM05D000091 ORTHO05D004126 7.4e-06 53.5 64 48.4
Lalb_Chr15g0090351 Lupinus albus HOM05D000091 ORTHO05D004126 9.6e-06 53.1 71 46.5
HPP92_005973 Vanilla planifolia HOM05D000091 ORTHO05D004126 9.6e-06 53.1 59 49.2
HPP92_005980 Vanilla planifolia HOM05D000091 ORTHO05D004126 9.6e-06 53.1 59 49.2


User provided reference genes

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