Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23501 Brassica carinata HOM05D000091 ORTHO05D093666 1.8e-27 125.2 63 100.0
BcaB04g19967 Brassica carinata HOM05D000091 ORTHO05D004126 6.5e-17 90.1 47 95.7
Sp2g27390 Schrenkiella parvula HOM05D000091 ORTHO05D004126 2.1e-15 85.1 47 91.5
Thhalv10003710m.g Eutrema salsugineum HOM05D000091 ORTHO05D004126 1.0e-14 82.8 47 87.2
BcaC04g23322 Brassica carinata HOM05D000091 ORTHO05D004126 1.8e-14 82.0 49 87.8
A09p08630 Brassica napus HOM05D000091 ORTHO05D004126 1.8e-14 82.0 49 87.8
C09p09740 Brassica napus HOM05D000091 ORTHO05D004126 1.8e-14 82.0 49 87.8
BolC9t53885H Brassica oleracea HOM05D000091 ORTHO05D004126 1.8e-14 82.0 49 87.8
BraA09t36512Z Brassica rapa HOM05D000091 ORTHO05D004126 1.8e-14 82.0 49 87.8
A06p31000 Brassica napus HOM05D000091 ORTHO05D004126 6.7e-14 80.1 44 90.9
BraA06t26042Z Brassica rapa HOM05D000091 ORTHO05D004126 6.7e-14 80.1 44 90.9
Aa31LG1G17570 Aethionema arabicum HOM05D000091 ORTHO05D004126 2.5e-13 78.2 51 80.4
BcaB05g23502 Brassica carinata HOM05D000091 ORTHO05D090849 2.5e-13 78.2 39 100.0
BcaC01g06906 Brassica carinata HOM05D000091 ORTHO05D004126 3.3e-13 77.8 44 88.6
C03p61960 Brassica napus HOM05D000091 ORTHO05D004126 3.3e-13 77.8 44 88.6
BolC3t18455H Brassica oleracea HOM05D000091 ORTHO05D004126 3.3e-13 77.8 44 88.6
AT5G64330 Arabidopsis thaliana HOM05D000091 ORTHO05D004126 9.7e-13 76.3 48 85.4
CARHR278260 Cardamine hirsuta HOM05D000091 ORTHO05D004126 2.2e-12 75.1 48 83.3
AL8G41690 Arabidopsis lyrata HOM05D000091 ORTHO05D004126 3.7e-12 74.3 48 83.3
Carub.0008s2512 Capsella rubella HOM05D000091 ORTHO05D004126 4.1e-11 70.9 46 87.0
THA.LOC104799835 Tarenaya hassleriana HOM05D000091 ORTHO05D004126 6.9e-11 70.1 47 76.6
Lj4g0014549 Lotus japonicus HOM05D000091 ORTHO05D004126 1.4e-08 62.4 55 61.8
Lalb_Chr18g0060461 Lupinus albus HOM05D000091 ORTHO05D004126 1.9e-08 62.0 55 58.2
ClCG10G009530 Citrullus lanatus HOM05D000091 ORTHO05D004126 3.2e-08 61.2 47 70.2
Duzib248G0007 Durio zibethinus HOM05D000091 ORTHO05D004126 3.2e-08 61.2 54 59.3
Migut.B00566 Erythranthe guttata HOM05D000091 ORTHO05D004126 3.2e-08 61.2 55 58.2
Gohir.D02G199600 Gossypium hirsutum HOM05D000091 ORTHO05D004126 3.2e-08 61.2 47 68.1
Gorai.005G224200 Gossypium raimondii HOM05D000091 ORTHO05D004126 3.2e-08 61.2 47 68.1
TPR.G9484 Trifolium pratense HOM05D000091 ORTHO05D004126 3.2e-08 61.2 55 60.0
Actinidia24014 Actinidia chinensis HOM05D000091 ORTHO05D004126 4.2e-08 60.8 44 70.5
COL.COLO4_32355 Corchorus olitorius HOM05D000091 ORTHO05D004126 4.2e-08 60.8 47 68.1
GSVIVG01012508001 Vitis vinifera HOM05D000091 ORTHO05D004126 4.2e-08 60.8 44 70.5
Hma1.2p1_1093F.1_g256080 Hydrangea macrophylla HOM05D000091 ORTHO05D004126 5.5e-08 60.5 47 66.0
TAR625G0011 Trochodendron aralioides HOM05D000091 ORTHO05D004126 5.5e-08 60.5 47 66.0
Gohir.A03G175800 Gossypium hirsutum HOM05D000091 ORTHO05D004126 7.2e-08 60.1 47 66.0
TAR381G1115 Trochodendron aralioides HOM05D000091 ORTHO05D004126 7.2e-08 60.1 47 68.1
ClCG09G015920 Citrullus lanatus HOM05D000091 ORTHO05D004126 9.4e-08 59.7 47 70.2
Dinv15986 Davidia involucrata HOM05D000091 ORTHO05D004126 9.4e-08 59.7 47 66.0
Gohir.D13G051200 Gossypium hirsutum HOM05D000091 ORTHO05D004126 1.2e-07 59.3 53 64.2
Gorai.013G057300 Gossypium raimondii HOM05D000091 ORTHO05D004126 1.2e-07 59.3 53 64.2
PGR042G2747 Punica granatum HOM05D000091 ORTHO05D004126 1.2e-07 59.3 44 68.2
Duzib132G1054 Durio zibethinus HOM05D000091 ORTHO05D004126 1.6e-07 58.9 47 66.0
Sc14g0003430 Simmondsia chinensis HOM05D000091 ORTHO05D004126 1.6e-07 58.9 45 66.7
Migut.N01090 Erythranthe guttata HOM05D000091 ORTHO05D004126 2.1e-07 58.5 46 63.0
Eucgr.G00960 Eucalyptus grandis HOM05D000091 ORTHO05D004126 2.1e-07 58.5 44 70.5
Ciclev10004479m.g Citrus clementina HOM05D000091 ORTHO05D004126 3.6e-07 57.8 47 61.7
MELO3C018590.2 Cucumis melo HOM05D000091 ORTHO05D004126 3.6e-07 57.8 47 66.0
Manes.07G037100 Manihot esculenta HOM05D000091 ORTHO05D004126 3.6e-07 57.8 52 61.5
AUR62012898 Chenopodium quinoa HOM05D000091 ORTHO05D004126 4.6e-07 57.4 47 63.8
AUR62027122 Chenopodium quinoa HOM05D000091 ORTHO05D004126 4.6e-07 57.4 47 63.8
Lj5A232T95 Lonicera japonica HOM05D000091 ORTHO05D004126 4.6e-07 57.4 54 55.6
Nitab4.5_0000313g0110 Nicotiana tabacum HOM05D000091 ORTHO05D004126 4.6e-07 57.4 44 65.9
Nitab4.5_0008998g0040 Nicotiana tabacum HOM05D000091 ORTHO05D004126 4.6e-07 57.4 44 65.9
Prupe.8G067500 Prunus persica HOM05D000091 ORTHO05D004126 4.6e-07 57.4 53 58.5
Thecc.02G132200 Theobroma cacao HOM05D000091 ORTHO05D004126 4.6e-07 57.4 47 63.8
Atru.chr6.1227 Acer truncatum HOM05D000091 ORTHO05D004126 6.1e-07 57.0 44 65.9
Aqoxy6G01465 Aquilegia oxysepala HOM05D000091 ORTHO05D004126 6.1e-07 57.0 44 68.2
CiPaw.05G031300 Carya illinoinensis HOM05D000091 ORTHO05D004126 6.1e-07 57.0 47 63.8
HanXRQChr11g0333371 Helianthus annuus HOM05D000091 ORTHO05D004126 6.1e-07 57.0 47 61.7
Lj6g0005625 Lotus japonicus HOM05D000091 ORTHO05D004126 6.1e-07 57.0 44 68.2
QL11p023808 Quercus lobata HOM05D000091 ORTHO05D004126 6.1e-07 57.0 47 66.0
TAR628G1646 Trochodendron aralioides HOM05D000091 ORTHO05D004126 6.1e-07 57.0 47 63.8
HPP92_005973 Vanilla planifolia HOM05D000091 ORTHO05D004126 6.1e-07 57.0 54 53.7
HPP92_005980 Vanilla planifolia HOM05D000091 ORTHO05D004126 6.1e-07 57.0 54 53.7
Ca_00155_v3 Cicer arietinum L. HOM05D000091 ORTHO05D004126 7.9e-07 56.6 44 65.9
Haze_10555 Corylus avellana HOM05D000091 ORTHO05D004126 7.9e-07 56.6 47 66.0
Lalb_Chr20g0122871 Lupinus albus HOM05D000091 ORTHO05D004126 7.9e-07 56.6 44 63.6
Psat1g214600 Pisum sativum HOM05D000091 ORTHO05D004126 7.9e-07 56.6 44 65.9
Ah.01g024040 Amaranthus hybridus HOM05D000091 ORTHO05D004126 1.0e-06 56.2 47 63.8
ECA236G2139 Erigeron canadensis HOM05D000091 ORTHO05D004126 1.0e-06 56.2 47 61.7
MD10G1053800 Malus domestica HOM05D000091 ORTHO05D004126 1.0e-06 56.2 42 71.4
RcHm_v2.0_Chr6g0271301 Rosa chinensis HOM05D000091 ORTHO05D004126 1.0e-06 56.2 42 71.4
SalBow6G1523 Salvia bowleyana HOM05D000091 ORTHO05D004126 1.0e-06 56.2 44 65.9
TWI59G0183 Tripterygium wilfordii HOM05D000091 ORTHO05D004126 1.0e-06 56.2 44 65.9
MSTRG.16608 Avicennia marina HOM05D000091 ORTHO05D004126 1.4e-06 55.8 44 63.6
CDE10G0408 Ceratophyllum demersum HOM05D000091 ORTHO05D004126 1.4e-06 55.8 44 65.9
CsaV3_7G007040 Cucumis sativus L. HOM05D000091 ORTHO05D004126 1.4e-06 55.8 47 63.8
DCAR_029190 Daucus carota HOM05D000091 ORTHO05D004126 1.4e-06 55.8 44 63.6
Glyma.08G069800 Glycine max HOM05D000091 ORTHO05D004126 1.4e-06 55.8 55 54.5
Gohir.A13G070500 Gossypium hirsutum HOM05D000091 ORTHO05D004126 1.4e-06 55.8 53 60.4
Lsat_1_v5_gn_7_83740 Lactuca sativa HOM05D000091 ORTHO05D004126 1.4e-06 55.8 47 61.7
Phvul.002G211400 Phaseolus vulgaris HOM05D000091 ORTHO05D004126 1.4e-06 55.8 55 54.5
TWI23G0226 Tripterygium wilfordii HOM05D000091 ORTHO05D004126 1.4e-06 55.8 44 63.6
VMungo0251G1806 Vigna mungo HOM05D000091 ORTHO05D004126 1.4e-06 55.8 55 54.5
CANSAT11G0467 Cannabis sativa HOM05D000091 ORTHO05D004126 1.8e-06 55.5 44 63.6
Cfa005694 Carpinus fangiana HOM05D000091 ORTHO05D004126 1.8e-06 55.5 44 68.2
Nn1g05501 Nelumbo nucifera HOM05D000091 ORTHO05D004126 1.8e-06 55.5 47 61.7
Sed0026147 Sechium edule HOM05D000091 ORTHO05D004126 1.8e-06 55.5 47 66.0
Actinidia04401 Actinidia chinensis HOM05D000091 ORTHO05D004126 2.3e-06 55.1 44 63.6
CSS0013813 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 2.3e-06 55.1 44 63.6
CSS0047297 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 2.3e-06 55.1 44 63.6
Cc02_g21030 Coffea canephora HOM05D000091 ORTHO05D004126 3.0e-06 54.7 44 63.6
Peaxi162Scf00299g00849 Petunia axillaris HOM05D000091 ORTHO05D004126 3.0e-06 54.7 44 63.6
MSTRG.27811 Avicennia marina HOM05D000091 ORTHO05D004126 3.9e-06 54.3 44 61.4
Ca_18371_v3 Cicer arietinum L. HOM05D000091 ORTHO05D004126 3.9e-06 54.3 44 63.6
Lalb_Chr15g0090351 Lupinus albus HOM05D000091 ORTHO05D004126 3.9e-06 54.3 55 52.7
Manes.10G102200 Manihot esculenta HOM05D000091 ORTHO05D004126 3.9e-06 54.3 47 61.7
Sopen01g048130 Solanum pennellii HOM05D000091 ORTHO05D004126 3.9e-06 54.3 55 52.7
Ah.01g007500 Amaranthus hybridus HOM05D000091 ORTHO05D004126 5.1e-06 53.9 48 62.5
PGSC0003DMG400033569 Solanum tuberosum HOM05D000091 ORTHO05D004126 5.1e-06 53.9 42 64.3
vmacro01850 Vaccinium macrocarpon HOM05D000091 ORTHO05D004126 5.1e-06 53.9 44 61.4
Nn5g29942 Nelumbo nucifera HOM05D000091 ORTHO05D004126 6.7e-06 53.5 47 55.3
PSO170G4338 Papaver somniferum HOM05D000091 ORTHO05D004126 6.7e-06 53.5 45 66.7
RhsimUnG0008300 Rhododendron simsii HOM05D000091 ORTHO05D004126 6.7e-06 53.5 44 61.4
RhsimUnG0106100 Rhododendron simsii HOM05D000091 ORTHO05D004126 6.7e-06 53.5 44 61.4
Sabra17G0032700 Salix brachista HOM05D000091 ORTHO05D004126 6.7e-06 53.5 47 57.4
Sabra17G0034000 Salix brachista HOM05D000091 ORTHO05D004126 6.7e-06 53.5 47 57.4
FvH4_5g25720 Fragaria vesca HOM05D000091 ORTHO05D004126 8.8e-06 53.1 48 62.5
FAN04G2272 Fragaria x ananassa HOM05D000091 ORTHO05D004126 8.8e-06 53.1 48 62.5
FAN08G3536 Fragaria x ananassa HOM05D000091 ORTHO05D004126 8.8e-06 53.1 48 62.5
FAN13G2241 Fragaria x ananassa HOM05D000091 ORTHO05D004126 8.8e-06 53.1 48 62.5
FAN18G3787 Fragaria x ananassa HOM05D000091 ORTHO05D004126 8.8e-06 53.1 48 62.5
PSO210G2717 Papaver somniferum HOM05D000091 ORTHO05D004126 8.8e-06 53.1 57 56.1


User provided reference genes

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