Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23476 Brassica carinata HOM05D000064 ORTHO05D093025 2.8e-49 198.4 106 100.0
AT2G43130 Arabidopsis thaliana HOM05D000064 ORTHO05D002317 8.4e-09 63.9 62 56.5
Carub.0004s2561 Capsella rubella HOM05D000064 ORTHO05D002317 8.4e-09 63.9 62 56.5
Aa31LG1G24940 Aethionema arabicum HOM05D000064 ORTHO05D002317 1.1e-08 63.5 64 54.7
AL4G41790 Arabidopsis lyrata HOM05D000064 ORTHO05D002317 1.1e-08 63.5 64 54.7
CARHR138200 Cardamine hirsuta HOM05D000064 ORTHO05D002317 1.1e-08 63.5 64 54.7
Thhalv10017231m.g Eutrema salsugineum HOM05D000064 ORTHO05D002317 1.1e-08 63.5 64 54.7
BcaNung03542 Brassica carinata HOM05D000064 ORTHO05D002317 5.4e-08 61.2 64 54.7
A03p24000 Brassica napus HOM05D000064 ORTHO05D002317 5.4e-08 61.2 64 53.1
BraA03t11612Z Brassica rapa HOM05D000064 ORTHO05D002317 5.4e-08 61.2 64 53.1
BcaC01g05260 Brassica carinata HOM05D000064 ORTHO05D002317 7.1e-08 60.8 64 53.1
BcaC01g05262 Brassica carinata HOM05D000064 ORTHO05D002317 7.1e-08 60.8 64 53.1
C03p28610 Brassica napus HOM05D000064 ORTHO05D002317 7.1e-08 60.8 64 53.1
BolC3t15225H Brassica oleracea HOM05D000064 ORTHO05D002317 7.1e-08 60.8 64 53.1
BcaC02g12411 Brassica carinata HOM05D000064 ORTHO05D002317 2.7e-07 58.9 64 53.1
A05p03620 Brassica napus HOM05D000064 ORTHO05D002317 2.7e-07 58.9 64 53.1
C04p04220 Brassica napus HOM05D000064 ORTHO05D002317 2.7e-07 58.9 64 53.1
BolC4t22059H Brassica oleracea HOM05D000064 ORTHO05D002317 2.7e-07 58.9 64 53.1
BraA05t19348Z Brassica rapa HOM05D000064 ORTHO05D002317 2.7e-07 58.9 64 53.1
THA.LOC104823360 Tarenaya hassleriana HOM05D000064 ORTHO05D002317 2.7e-07 58.9 64 51.6
TAR362G0665 Trochodendron aralioides HOM05D000064 ORTHO05D002317 6.0e-07 57.8 63 49.2
Sabra14G0113900 Salix brachista HOM05D000064 ORTHO05D002317 7.8e-07 57.4 62 53.2
SMO146G0021 Selaginella moellendorffii HOM05D000064 ORTHO05D002317 7.8e-07 57.4 62 48.4
ATR0712G097 Amborella trichopoda HOM05D000064 ORTHO05D002317 1.0e-06 57.0 63 49.2
TWI15G0196 Tripterygium wilfordii HOM05D000064 ORTHO05D002317 1.0e-06 57.0 64 51.6
Aa31LG5G5300 Aethionema arabicum HOM05D000064 ORTHO05D002317 1.3e-06 56.6 62 51.6
Aqoxy2G03961 Aquilegia oxysepala HOM05D000064 ORTHO05D002317 1.3e-06 56.6 58 53.4
CANSAT78G0641 Cannabis sativa HOM05D000064 ORTHO05D002317 1.3e-06 56.6 62 51.6
Dinv12804 Davidia involucrata HOM05D000064 ORTHO05D002317 1.3e-06 56.6 63 49.2
THA.LOC104826186 Tarenaya hassleriana HOM05D000064 ORTHO05D002317 1.3e-06 56.6 63 49.2
Thecc.01G213000 Theobroma cacao HOM05D000064 ORTHO05D002317 1.3e-06 56.6 62 50.0
Duzib151G1012 Durio zibethinus HOM05D000064 ORTHO05D002317 1.7e-06 56.2 62 51.6
Manes.11G113500 Manihot esculenta HOM05D000064 ORTHO05D002317 1.7e-06 56.2 62 51.6
THA.LOC104815867 Tarenaya hassleriana HOM05D000064 ORTHO05D002317 1.7e-06 56.2 62 51.6
Atru.chr3.1680 Acer truncatum HOM05D000064 ORTHO05D002317 2.3e-06 55.8 62 51.6
BcaB02g10409 Brassica carinata HOM05D000064 ORTHO05D002317 2.3e-06 55.8 62 50.0
Nitab4.5_0004200g0070 Nicotiana tabacum HOM05D000064 ORTHO05D002317 2.3e-06 55.8 62 50.0
Potri.002G231800 Populus trichocarpa HOM05D000064 ORTHO05D002317 2.3e-06 55.8 62 51.6
Potri.014G150300 Populus trichocarpa HOM05D000064 ORTHO05D002317 2.3e-06 55.8 62 51.6
Rhsim02G0070000 Rhododendron simsii HOM05D000064 ORTHO05D002317 2.3e-06 55.8 64 50.0
vmacro15596 Vaccinium macrocarpon HOM05D000064 ORTHO05D002317 2.3e-06 55.8 64 50.0
Cpa.g.sc90.61 Carica papaya HOM05D000064 ORTHO05D002317 3.0e-06 55.5 64 50.0
Eucgr.A00215 Eucalyptus grandis HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
FvH4_4g11760 Fragaria vesca HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
FAN07G2071 Fragaria x ananassa HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
FAN12G0927 Fragaria x ananassa HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
FAN12G1362 Fragaria x ananassa HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
PGR083G2322 Punica granatum HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
RcHm_v2.0_Chr4g0409011 Rosa chinensis HOM05D000064 ORTHO05D002317 3.0e-06 55.5 62 51.6
HPP92_023205 Vanilla planifolia HOM05D000064 ORTHO05D002317 3.0e-06 55.5 64 48.4
Actinidia13833 Actinidia chinensis HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 48.4
MSTRG.17975 Avicennia marina HOM05D000064 ORTHO05D002317 3.9e-06 55.1 63 46.0
CARHR125310 Cardamine hirsuta HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 50.0
Cc03_g10260 Coffea canephora HOM05D000064 ORTHO05D002317 3.9e-06 55.1 61 50.8
Thhalv10017221m.g Eutrema salsugineum HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 50.0
Thhalv10021494m.g Eutrema salsugineum HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 48.4
Lsat_1_v5_gn_1_69980 Lactuca sativa HOM05D000064 ORTHO05D002317 3.9e-06 55.1 61 49.2
MD04G1033200 Malus domestica HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 51.6
Nitab4.5_0002485g0070 Nicotiana tabacum HOM05D000064 ORTHO05D002317 3.9e-06 55.1 64 48.4
Prupe.1G181200 Prunus persica HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 51.6
THA.LOC104800914 Tarenaya hassleriana HOM05D000064 ORTHO05D002317 3.9e-06 55.1 62 50.0
Actinidia25344 Actinidia chinensis HOM05D000064 ORTHO05D010180 5.1e-06 54.7 53 58.5
BcaB01g04028 Brassica carinata HOM05D000064 ORTHO05D002317 5.1e-06 54.7 62 50.0
CANSAT01G1111 Cannabis sativa HOM05D000064 ORTHO05D002317 5.1e-06 54.7 63 47.6
CANSAT01G1157 Cannabis sativa HOM05D000064 ORTHO05D002317 5.1e-06 54.7 63 47.6
Dinv22664 Davidia involucrata HOM05D000064 ORTHO05D002317 5.1e-06 54.7 64 50.0
Gorai.008G056300 Gossypium raimondii HOM05D000064 ORTHO05D002317 5.1e-06 54.7 62 50.0
HanXRQChr01g0021901 Helianthus annuus HOM05D000064 ORTHO05D002317 5.1e-06 54.7 61 49.2
Actinidia32940 Actinidia chinensis HOM05D000064 ORTHO05D002317 6.6e-06 54.3 62 50.0
arahy.Tifrunner.gnm1.ann1.ANN8EG Arachis hypogaea HOM05D000064 ORTHO05D002317 6.6e-06 54.3 62 50.0
arahy.Tifrunner.gnm1.ann1.NX76LV Arachis hypogaea HOM05D000064 ORTHO05D002317 6.6e-06 54.3 62 50.0
CSS0006891 Camellia sinensis var. sinensis HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 49.2
DCAR_005280 Daucus carota HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 49.2
Duzib133G0888 Durio zibethinus HOM05D000064 ORTHO05D002317 6.6e-06 54.3 62 48.4
Migut.N00434 Erythranthe guttata HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 47.5
Eucgr.H00732 Eucalyptus grandis HOM05D000064 ORTHO05D002317 6.6e-06 54.3 64 48.4
Lj1g0000608 Lotus japonicus HOM05D000064 ORTHO05D002317 6.6e-06 54.3 62 50.0
Nitab4.5_0015672g0010 Nicotiana tabacum HOM05D000064 ORTHO05D002317 6.6e-06 54.3 64 48.4
Peaxi162Scf00286g00439 Petunia axillaris HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 49.2
Hund19030 Selenicereus undatus HOM05D000064 ORTHO05D002317 6.6e-06 54.3 64 50.0
Solyc09g098170.4 Solanum lycopersicum HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 49.2
Sopen09g036120 Solanum pennellii HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 49.2
PGSC0003DMG400011903 Solanum tuberosum HOM05D000064 ORTHO05D002317 6.6e-06 54.3 61 49.2
Thecc.04G181200 Theobroma cacao HOM05D000064 ORTHO05D002317 6.6e-06 54.3 58 53.4
AL4G26920 Arabidopsis lyrata HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
AT2G31680 Arabidopsis thaliana HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
MSTRG.12757 Avicennia marina HOM05D000064 ORTHO05D002317 8.6e-06 53.9 63 46.0
BcaC01g05936 Brassica carinata HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
BcaC07g42108 Brassica carinata HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
A03p17830 Brassica napus HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
A05p13840 Brassica napus HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
A09p67290 Brassica napus HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
C03p20900 Brassica napus HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
BolC3t14470H Brassica oleracea HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
BolC8t52686H Brassica oleracea HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
BraA05t20319Z Brassica rapa HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
BraA09t42061Z Brassica rapa HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
CAN.G710.32 Capsicum annuum HOM05D000064 ORTHO05D002317 8.6e-06 53.9 61 49.2
Gohir.A02G013300 Gossypium hirsutum HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
Gohir.D07G166600 Gossypium hirsutum HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
Gohir.D12G053101 Gossypium hirsutum HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
Gorai.005G017600 Gossypium raimondii HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 50.0
Gorai.N003900 Gossypium raimondii HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
Nitab4.5_0000038g0020 Nicotiana tabacum HOM05D000064 ORTHO05D002317 8.6e-06 53.9 64 46.9
Oeu003641.1 Olea europaea HOM05D000064 ORTHO05D002317 8.6e-06 53.9 64 48.4
Oeu003642.1 Olea europaea HOM05D000064 ORTHO05D002317 8.6e-06 53.9 64 48.4
Oeu057845.1 Olea europaea HOM05D000064 ORTHO05D002317 8.6e-06 53.9 64 48.4
Pp3c10_14020 Physcomitrium patens HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 45.2
Pp3c3_27750 Physcomitrium patens HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 45.2
Sabra02G0190100 Salix brachista HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
Sp4g14080 Schrenkiella parvula HOM05D000064 ORTHO05D002317 8.6e-06 53.9 62 48.4
Hund24447 Selenicereus undatus HOM05D000064 ORTHO05D002317 8.6e-06 53.9 64 48.4


User provided reference genes

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