Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22752 Brassica carinata HOM05D005094 ORTHO05D006271 7.6e-58 227.6 184 100.0
BcaB08g36455 Brassica carinata HOM05D005094 ORTHO05D006271 1.1e-56 223.8 184 98.9
BcaC04g19539 Brassica carinata HOM05D005094 ORTHO05D006271 1.1e-56 223.8 184 76.6
A10p18680 Brassica napus HOM05D005094 ORTHO05D006271 1.1e-56 223.8 184 80.4
C09p54620 Brassica napus HOM05D005094 ORTHO05D006271 1.1e-56 223.8 184 80.4
BolC9t58328H Brassica oleracea HOM05D005094 ORTHO05D006271 1.1e-56 223.8 184 80.4
Sp6g23110 Schrenkiella parvula HOM05D005094 ORTHO05D006271 5.4e-56 221.5 184 74.5
BNapus_Darmor_BZH_scaffold_38p00890 Brassica napus HOM05D005094 ORTHO05D006271 7.9e-55 217.6 184 97.8
BolC2t07135H Brassica oleracea HOM05D005094 ORTHO05D006271 7.9e-55 217.6 184 97.8
Carub.0006s1972 Capsella rubella HOM05D005094 ORTHO05D006271 1.0e-54 217.2 184 69.0
Aa31LG1G13330 Aethionema arabicum HOM05D005094 ORTHO05D006271 1.7e-54 216.5 184 73.4
CARHR191450 Cardamine hirsuta HOM05D005094 ORTHO05D006271 1.7e-54 216.5 184 78.3
Thhalv10014509m.g Eutrema salsugineum HOM05D005094 ORTHO05D006271 3.0e-54 215.7 184 96.7
AT5G22080 Arabidopsis thaliana HOM05D005094 ORTHO05D006271 3.9e-54 215.3 184 67.4
BraA10t43948Z Brassica rapa HOM05D005094 ORTHO05D006271 5.1e-54 214.9 193 75.1
AL6G33050 Arabidopsis lyrata HOM05D005094 ORTHO05D006271 2.5e-53 212.6 184 82.6
Sed0013610 Sechium edule HOM05D005094 ORTHO05D006271 3.4e-50 202.2 184 66.3
THA.LOC104810936 Tarenaya hassleriana HOM05D005094 ORTHO05D006271 7.6e-50 201.1 184 68.5
Potri.001G215800 Populus trichocarpa HOM05D005094 ORTHO05D006271 2.9e-49 199.1 184 64.7
QL01p019499 Quercus lobata HOM05D005094 ORTHO05D006271 2.9e-49 199.1 183 64.5
PGR119G0969 Punica granatum HOM05D005094 ORTHO05D006271 4.9e-49 198.4 188 63.3
Dinv18848 Davidia involucrata HOM05D005094 ORTHO05D006271 1.1e-48 197.2 184 73.4
Duzib170G0543 Durio zibethinus HOM05D005094 ORTHO05D006271 1.1e-48 197.2 184 65.8
SalBow3G2633 Salvia bowleyana HOM05D005094 ORTHO05D006271 1.9e-48 196.4 184 60.9
DCAR_014060 Daucus carota HOM05D005094 ORTHO05D006271 3.2e-48 195.7 184 62.5
Ciclev10029128m.g Citrus clementina HOM05D005094 ORTHO05D006271 4.2e-48 195.3 184 65.8
MSTRG.12396 Avicennia marina HOM05D005094 ORTHO05D006271 5.4e-48 194.9 184 59.8
CsaV3_1G043920 Cucumis sativus L. HOM05D005094 ORTHO05D006271 5.4e-48 194.9 184 64.1
CDE06G0118 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 7.1e-48 194.5 184 65.2
Gohir.A05G077850 Gossypium hirsutum HOM05D005094 ORTHO05D006271 7.1e-48 194.5 184 65.8
Gohir.D05G080650 Gossypium hirsutum HOM05D005094 ORTHO05D006271 7.1e-48 194.5 184 65.8
Eucgr.J00577 Eucalyptus grandis HOM05D005094 ORTHO05D006271 1.2e-47 193.7 184 65.8
HanXRQChr13g0420191 Helianthus annuus HOM05D005094 ORTHO05D006271 1.6e-47 193.4 184 58.2
Manes.04G062000 Manihot esculenta HOM05D005094 ORTHO05D006271 1.6e-47 193.4 184 65.2
Nitab4.5_0007630g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 1.6e-47 193.4 184 64.7
PGSC0003DMG400005935 Solanum tuberosum HOM05D005094 ORTHO05D006271 1.6e-47 193.4 184 60.9
CAN.G1463.12 Capsicum annuum HOM05D005094 ORTHO05D006271 2.1e-47 193.0 184 67.9
Cc01_g07820 Coffea canephora HOM05D005094 ORTHO05D006271 2.1e-47 193.0 184 81.0
MD11G1174000 Malus domestica HOM05D005094 ORTHO05D006271 2.1e-47 193.0 184 89.1
Solyc06g073950.3 Solanum lycopersicum HOM05D005094 ORTHO05D006271 2.1e-47 193.0 184 60.9
Sopen06g030350 Solanum pennellii HOM05D005094 ORTHO05D006271 2.1e-47 193.0 184 60.9
Actinidia07282 Actinidia chinensis HOM05D005094 ORTHO05D006271 2.7e-47 192.6 184 60.3
TAR633G0299 Trochodendron aralioides HOM05D005094 ORTHO05D006271 3.5e-47 192.2 184 81.5
Atru.chr3.3099 Acer truncatum HOM05D005094 ORTHO05D006271 4.6e-47 191.8 184 72.3
Migut.N02437 Erythranthe guttata HOM05D005094 ORTHO05D006271 4.6e-47 191.8 184 64.1
arahy.Tifrunner.gnm1.ann1.S09H8L Arachis hypogaea HOM05D005094 ORTHO05D006271 6.0e-47 191.4 184 63.6
CANSAT54G2440 Cannabis sativa HOM05D005094 ORTHO05D006271 6.0e-47 191.4 184 64.7
Lj2A957G10 Lonicera japonica HOM05D005094 ORTHO05D006271 6.0e-47 191.4 184 58.2
TAR636G3194 Trochodendron aralioides HOM05D005094 ORTHO05D006271 6.0e-47 191.4 184 65.8
arahy.Tifrunner.gnm1.ann1.5LCH1K Arachis hypogaea HOM05D005094 ORTHO05D006271 7.9e-47 191.0 184 63.0
RcHm_v2.0_Chr7g0218521 Rosa chinensis HOM05D005094 ORTHO05D006271 7.9e-47 191.0 184 87.5
Solyc11g071930.2 Solanum lycopersicum HOM05D005094 ORTHO05D006271 7.9e-47 191.0 184 61.4
Sopen11g029600 Solanum pennellii HOM05D005094 ORTHO05D006271 7.9e-47 191.0 184 61.4
Aqoxy1G00640 Aquilegia oxysepala HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 60.9
FvH4_5g27361 Fragaria vesca HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 73.9
Glyma.13G312400 Glycine max HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 63.6
Lj3g0019788 Lotus japonicus HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 63.6
Lalb_Chr24g0393351 Lupinus albus HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 73.4
Medtr2g087520 Medicago truncatula HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 75.0
Peaxi162Scf00429g00211 Petunia axillaris HOM05D005094 ORTHO05D006271 1.0e-46 190.7 184 59.8
arahy.Tifrunner.gnm1.ann1.23FIWR Arachis hypogaea HOM05D005094 ORTHO05D006271 1.3e-46 190.3 184 69.6
CAN.G689.3 Capsicum annuum HOM05D005094 ORTHO05D006271 1.3e-46 190.3 184 59.2
PGSC0003DMG400002984 Solanum tuberosum HOM05D005094 ORTHO05D006271 1.3e-46 190.3 184 59.2
ATR0665G096 Amborella trichopoda HOM05D005094 ORTHO05D006271 1.8e-46 189.9 183 56.8
arahy.Tifrunner.gnm1.ann1.1B470G Arachis hypogaea HOM05D005094 ORTHO05D006271 1.8e-46 189.9 184 80.4
Glyma.12G189400 Glycine max HOM05D005094 ORTHO05D006271 1.8e-46 189.9 184 63.0
unitig_22.g5683 Utricularia gibba HOM05D005094 ORTHO05D006271 1.8e-46 189.9 184 85.9
CSS0045075 Camellia sinensis var. sinensis HOM05D005094 ORTHO05D006271 2.3e-46 189.5 184 58.7
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.3e-46 189.5 179 76.5
MBI06_g20956_MAGBIO Magnolia biondii HOM05D005094 ORTHO05D006271 2.3e-46 189.5 184 87.0
Hma1.2p1_0101F.1_g049550 Hydrangea macrophylla HOM05D005094 ORTHO05D006271 3.0e-46 189.1 184 87.0
Ca_01630_v3 Cicer arietinum L. HOM05D005094 ORTHO05D006271 3.9e-46 188.7 184 60.9
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.9e-46 188.7 179 84.9
Prupe.6G145600 Prunus persica HOM05D005094 ORTHO05D006271 5.1e-46 188.3 184 87.5
VMungo1080G0255 Vigna mungo HOM05D005094 ORTHO05D006271 6.7e-46 188.0 184 63.0
Nitab4.5_0010585g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 8.7e-46 187.6 184 59.2
Phvul.005G118800 Phaseolus vulgaris HOM05D005094 ORTHO05D006271 8.7e-46 187.6 184 75.0
Nn6g34655 Nelumbo nucifera HOM05D005094 ORTHO05D006271 1.1e-45 187.2 184 69.0
Potri.009G016700 Populus trichocarpa HOM05D005094 ORTHO05D006271 1.1e-45 187.2 184 61.4
Oeu048825.1 Olea europaea HOM05D005094 ORTHO05D006271 1.9e-45 186.4 184 58.2
unitig_8.g3656 Utricularia gibba HOM05D005094 ORTHO05D006271 5.6e-45 184.9 184 57.1
CiPaw.14G093900 Carya illinoinensis HOM05D005094 ORTHO05D006271 1.6e-44 183.3 184 85.9
Nn2g14337 Nelumbo nucifera HOM05D005094 ORTHO05D006271 2.1e-44 183.0 184 59.2
GSVIVG01037590001 Vitis vinifera HOM05D005094 ORTHO05D006271 2.1e-44 183.0 184 85.9
HPP92_002190 Vanilla planifolia HOM05D005094 ORTHO05D006271 3.7e-44 182.2 184 62.0
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 4.8e-44 181.8 246 54.1
Sabra16G0127800 Salix brachista HOM05D005094 ORTHO05D006271 1.1e-43 180.6 221 54.3
Rhsim01G0200800 Rhododendron simsii HOM05D005094 ORTHO05D006271 1.4e-43 180.3 184 63.6
Psat5g261040 Pisum sativum HOM05D005094 ORTHO05D006271 1.8e-43 179.9 184 67.9
Thecc.09G271300 Theobroma cacao HOM05D005094 ORTHO05D006271 2.4e-43 179.5 184 63.6
SGA_v2.0_scaffold268G46196 Striga asiatica HOM05D005094 ORTHO05D006271 4.0e-43 178.7 217 55.8
HanXRQChr03g0091071 Helianthus annuus HOM05D005094 ORTHO05D006271 5.3e-43 178.3 184 58.2
Os03g0261500 Oryza sativa ssp. japonica HOM05D005094 ORTHO05D006271 5.3e-43 178.3 184 57.1
TWI79G0842 Tripterygium wilfordii HOM05D005094 ORTHO05D006271 6.9e-43 177.9 184 60.9
AUR62001557 Chenopodium quinoa HOM05D005094 ORTHO05D006271 2.0e-42 176.4 183 55.7
AUR62020223 Chenopodium quinoa HOM05D005094 ORTHO05D006271 4.5e-42 175.3 184 55.4
ECA240G4521 Erigeron canadensis HOM05D005094 ORTHO05D006271 4.5e-42 175.3 184 54.3
PSO384G0916 Papaver somniferum HOM05D005094 ORTHO05D006271 5.8e-42 174.9 184 82.6
Zm00001eb011420 Zea mays HOM05D005094 ORTHO05D006271 7.6e-42 174.5 184 55.4
Lsat_1_v5_gn_3_114781 Lactuca sativa HOM05D005094 ORTHO05D006271 1.7e-41 173.3 180 57.2
Mapoly0009s0161 Marchantia polymorpha HOM05D005094 ORTHO05D006271 2.2e-41 172.9 184 58.2
COL.COLO4_25411 Corchorus olitorius HOM05D005094 ORTHO05D006271 3.8e-41 172.2 228 50.9
Hund18798 Selenicereus undatus HOM05D005094 ORTHO05D006271 8.4e-41 171.0 184 59.2
PSO339G5010 Papaver somniferum HOM05D005094 ORTHO05D006271 1.1e-40 170.6 184 81.5
Oeu058195.3 Olea europaea HOM05D005094 ORTHO05D006271 7.1e-40 167.9 232 46.1
EL10Ac7g16288 Beta vulgaris HOM05D005094 ORTHO05D006271 1.2e-39 167.2 184 57.1
SHI25260 Sapria himalayana HOM05D005094 ORTHO05D006271 6.0e-39 164.9 183 55.2
Haze_23570 Corylus avellana HOM05D005094 ORTHO05D006271 1.3e-38 163.7 246 65.4
Pp3c14_160 Physcomitrium patens HOM05D005094 ORTHO05D006271 3.0e-38 162.5 184 54.3
Pp3c14_168 Physcomitrium patens HOM05D005094 ORTHO05D006271 3.0e-38 162.5 184 54.3
AagrBONN_evm.TU.Sc2ySwM_362.382 Anthoceros agrestis HOM05D005094 ORTHO05D006271 2.1e-36 156.4 184 52.2
SMO361G0106 Selaginella moellendorffii HOM05D005094 ORTHO05D006271 2.1e-36 156.4 182 54.9
TPR.G4181 Trifolium pratense HOM05D005094 ORTHO05D006271 1.8e-35 153.3 167 66.5
ClCG03G012000 Citrullus lanatus HOM05D005094 ORTHO05D006271 2.5e-32 142.9 184 48.9
CBR_g39052 Chara braunii HOM05D005094 ORTHO05D006271 5.5e-32 141.7 182 45.6
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 9.3e-32 141.0 155 62.6
MELO3C015043.2 Cucumis melo HOM05D005094 ORTHO05D006271 1.6e-31 140.2 184 51.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.7e-31 139.4 155 70.3
SGA_v2.0_scaffold16G07505 Striga asiatica HOM05D005094 ORTHO05D006271 3.5e-31 139.0 184 50.5
BcaC03g13856 Brassica carinata HOM05D005094 ORTHO05D006271 6.1e-31 138.3 143 96.5
Duzib168G1065 Durio zibethinus HOM05D005094 ORTHO05D006271 1.3e-28 130.6 184 52.2
Sc21g0006770 Simmondsia chinensis HOM05D005094 ORTHO05D006271 1.8e-27 126.7 157 56.7
Gorai.009G082400 Gossypium raimondii HOM05D005094 ORTHO05D006271 7.7e-26 121.3 171 53.2
BolC8t51866H Brassica oleracea HOM05D004977 ORTHO05D006454 6.7e-22 108.2 151 56.3
vmacro14319 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 8.8e-22 107.8 146 56.8
C08p43100 Brassica napus HOM05D004977 ORTHO05D006454 2.0e-21 106.7 151 55.6
CDE08G1429 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 4.3e-21 105.5 54 92.6
BcaC01g06605 Brassica carinata HOM05D005094 ORTHO05D006271 4.8e-20 102.1 126 53.2
Nitab4.5_0005360g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 4.1e-19 99.0 53 86.8
Oeu058196.1 Olea europaea HOM05D005094 ORTHO05D006271 4.1e-19 99.0 104 55.8
BcaC07g41303 Brassica carinata HOM05D004977 ORTHO05D006454 2.2e-17 93.2 50 92.0
Cpa.g.sc103.15 Carica papaya HOM05D005094 ORTHO05D006271 2.9e-17 92.8 49 91.8
Cre12.g557950 Chlamydomonas reinhardtii HOM05D005094 ORTHO05D006271 1.4e-16 90.5 183 32.2
A03p10590 Brassica napus HOM05D001105 ORTHO05D003643 1.0e-14 84.3 43 95.3
BraA03t10371Z Brassica rapa HOM05D001105 ORTHO05D003643 1.0e-14 84.3 43 95.3
SEGI_32448 Sequoiadendron giganteum HOM05D005094 ORTHO05D006271 3.9e-14 82.4 43 93.0
Duzib150G0850 Durio zibethinus HOM05D005094 ORTHO05D006271 5.1e-14 82.0 56 82.1
BcaB01g04743 Brassica carinata HOM05D005094 ORTHO05D006271 1.1e-13 80.9 55 80.0
CDE08G0906 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 2.0e-13 80.1 51 76.5
MSTRG.17673 Avicennia marina HOM05D005094 ORTHO05D006271 1.8e-11 73.6 51 76.5
vmacro14320 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 1.8e-11 73.6 43 81.4
MELO3C000325.2 Cucumis melo HOM05D005094 ORTHO05D006271 3.1e-11 72.8 43 76.7
MD03G1156300 Malus domestica HOM05D005094 ORTHO05D006271 1.6e-10 70.5 45 82.2
C03p12180 Brassica napus HOM05D001105 ORTHO05D003643 8.5e-09 64.7 32 93.8


User provided reference genes

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