Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 4.3e-33 144.8 121 100.0
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 3.4e-30 135.2 121 96.7
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 9.8e-30 133.7 121 95.9
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 2.2e-29 132.5 121 95.0
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 4.9e-29 131.3 121 93.4
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 8.3e-29 130.6 122 95.9
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 1.8e-28 129.4 121 94.2
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.6e-27 126.3 122 94.3
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 1.0e-26 123.6 121 91.7
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.7e-26 122.9 121 91.7
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 1.7e-26 122.9 123 91.9
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 1.7e-26 122.9 123 91.9
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 2.3e-26 122.5 121 91.7
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.3e-26 122.5 122 92.6
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 5.0e-26 121.3 122 91.8
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 5.0e-26 121.3 122 91.8
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 8.6e-26 120.6 123 91.1
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 8.6e-26 120.6 123 91.1
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.5e-25 119.8 121 90.1
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 1.9e-25 119.4 70 84.3
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.5e-25 119.0 122 89.3
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 5.6e-25 117.9 122 89.3
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 7.3e-25 117.5 121 88.4
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 9.5e-25 117.1 119 87.4
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 1.2e-24 116.7 71 81.7
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 1.6e-24 116.3 122 89.3
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 2.1e-24 115.9 70 80.0
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 4.7e-24 114.8 119 85.7
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 6.2e-24 114.4 122 87.7
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 6.2e-24 114.4 71 83.1
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 6.2e-24 114.4 70 78.6
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 8.0e-24 114.0 69 84.1
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 1.0e-23 113.6 70 80.0
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 1.0e-23 113.6 70 82.9
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 1.4e-23 113.2 122 87.7
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 4.0e-23 111.7 70 78.6
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 4.0e-23 111.7 70 75.7
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 5.2e-23 111.3 67 80.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 5.2e-23 111.3 67 80.6
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 8.9e-23 110.5 69 76.8
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 8.9e-23 110.5 70 77.1
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 8.9e-23 110.5 70 78.6
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.2e-22 110.2 70 75.7
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 1.5e-22 109.8 70 75.7
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.5e-22 109.8 68 82.4
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 2.0e-22 109.4 68 82.4
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 2.0e-22 109.4 68 82.4
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 2.6e-22 109.0 68 80.9
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 3.4e-22 108.6 68 77.9
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.4e-22 108.6 69 75.4
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 3.4e-22 108.6 69 78.3
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 4.4e-22 108.2 70 77.1
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 4.4e-22 108.2 70 78.6
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 5.8e-22 107.8 67 79.1
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 5.8e-22 107.8 70 78.6
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 5.8e-22 107.8 69 75.4
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 5.8e-22 107.8 69 75.4
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 5.8e-22 107.8 69 75.4
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 5.8e-22 107.8 70 80.0
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 5.8e-22 107.8 70 74.3
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 7.5e-22 107.5 70 74.3
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 7.5e-22 107.5 71 78.9
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 7.5e-22 107.5 68 79.4
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 9.8e-22 107.1 68 77.9
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 74.3
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 75.7
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 78.6
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 72.9
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 2.2e-21 105.9 69 76.8
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 2.2e-21 105.9 68 77.9
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.9e-21 105.5 67 77.6
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.9e-21 105.5 67 77.6
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 2.9e-21 105.5 70 71.4
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 3.7e-21 105.1 68 77.9
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 3.7e-21 105.1 70 71.4
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 3.7e-21 105.1 67 77.6
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 3.7e-21 105.1 67 80.6
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.7e-21 105.1 67 77.6
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 4.9e-21 104.8 70 74.3
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 4.9e-21 104.8 68 76.5
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 4.9e-21 104.8 69 79.7
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 4.9e-21 104.8 68 76.5
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 4.9e-21 104.8 68 76.5
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 6.4e-21 104.4 67 76.1
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 6.4e-21 104.4 70 72.9
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 6.4e-21 104.4 70 74.3
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 1.1e-20 103.6 70 74.3
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 72.9
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 72.9
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 1.4e-20 103.2 67 76.1
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 72.9
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 74.3
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 1.4e-20 103.2 67 77.6
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 1.9e-20 102.8 69 73.9
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.9e-20 102.8 70 71.4
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.9e-20 102.8 69 73.9
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 2.4e-20 102.4 70 71.4
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 2.4e-20 102.4 70 74.3
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.2e-20 102.1 67 74.6
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.2e-20 102.1 69 75.4
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 4.1e-20 101.7 70 70.0
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 72.9
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 5.4e-20 101.3 67 76.1
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 5.4e-20 101.3 67 76.1
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 5.4e-20 101.3 67 76.1
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 5.4e-20 101.3 67 76.1
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 71.4
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 5.4e-20 101.3 71 73.2
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 68.6
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 7.0e-20 100.9 66 75.8
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 7.0e-20 100.9 70 72.9
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 7.0e-20 100.9 70 70.0
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 7.0e-20 100.9 68 75.0
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 9.2e-20 100.5 70 67.1
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 9.2e-20 100.5 70 70.0
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 9.2e-20 100.5 70 72.9
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 9.2e-20 100.5 70 67.1
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.6e-19 99.8 70 71.4
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 1.6e-19 99.8 68 75.0
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.7e-19 99.0 70 68.6
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 3.5e-19 98.6 67 76.1
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 4.6e-19 98.2 70 68.6
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 4.6e-19 98.2 60 80.0
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 70.0
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 70.0
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 6.0e-19 97.8 68 69.1
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 72.9
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 1.0e-18 97.1 69 65.2
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 67.1
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 70.0
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.7e-18 96.3 66 71.2
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 2.3e-18 95.9 70 67.1
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.0e-18 95.5 70 67.1
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 6.6e-18 94.4 69 63.8
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 6.6e-18 94.4 70 64.3
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 8.6e-18 94.0 70 65.7
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.1e-17 93.6 55 90.9
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.5e-17 93.2 61 73.8
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.5e-17 93.2 69 66.7
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 1.9e-17 92.8 68 67.6
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 3.3e-17 92.0 62 74.2
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 4.3e-17 91.7 70 65.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 2.8e-16 89.0 66 66.7
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 4.7e-16 88.2 106 89.6
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 4.7e-16 88.2 70 58.6
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 2.6e-14 82.4 70 61.4
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 1.1e-12 77.0 46 80.4
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 1.4e-12 76.6 52 75.0
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.9e-12 76.3 72 55.6
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 4.1e-12 75.1 72 54.2
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 2.7e-11 72.4 42 78.6
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 1.3e-10 70.1 70 47.1
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 1.7e-10 69.7 72 45.8
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 3.9e-10 68.6 42 71.4
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 5.6e-09 64.7 46 63.0


User provided reference genes

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