Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 1.7e-283 978.8 526 100.0
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 3.3e-207 725.3 528 79.4
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 9.6e-207 723.8 527 79.9
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 9.6e-207 723.8 527 79.9
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 9.6e-207 723.8 527 79.9
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 5.5e-202 708.0 532 77.4
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 2.0e-196 689.5 527 76.7
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 1.7e-166 590.1 554 65.7
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 1.3e-158 563.9 540 63.1
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.9e-146 523.5 547 61.6
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 6.0e-140 501.9 553 56.1
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 5.8e-119 432.2 540 56.3
AL52U10020 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 5.6e-106 389.0 547 52.7
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 5.1e-83 312.8 372 55.6
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 9.1e-64 248.8 413 43.8
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.4e-59 235.0 454 43.4
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 3.4e-26 124.0 364 34.6
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 5.8e-26 123.2 71 67.6
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.1e-24 117.1 378 33.9
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 9.2e-24 115.9 293 33.1
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 9.2e-24 115.9 341 30.8
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 1.2e-23 115.5 465 30.8
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 7.8e-23 112.8 103 50.5
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 1.7e-22 111.7 474 29.3
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 2.3e-22 111.3 386 30.3
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 3.9e-22 110.5 338 31.4
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 5.0e-22 110.2 445 31.2
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.9e-21 108.2 300 35.0
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 4.3e-21 107.1 209 36.4
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 4.3e-21 107.1 459 27.0
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 7.3e-21 106.3 381 30.2
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 2.1e-20 104.8 385 29.9
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 2.8e-20 104.4 200 37.0
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 4.7e-20 103.6 114 54.4
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 6.2e-20 103.2 284 34.5
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 1.4e-19 102.1 397 30.2
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 1.8e-19 101.7 233 32.2
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 3.1e-19 100.9 338 31.7
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 4.0e-19 100.5 505 29.5
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 4.0e-19 100.5 412 28.2
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 5.2e-19 100.1 402 26.9
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 6.8e-19 99.8 374 30.7
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.2e-18 99.0 299 31.4
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 1.5e-18 98.6 249 34.9
arahy.Tifrunner.gnm1.ann1.J1TK4W Arachis hypogaea HOM05D006920 ORTHO05D005895 2.6e-18 97.8 76 56.6
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 2.6e-18 97.8 305 31.1
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 9.8e-18 95.9 339 28.0
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 1.7e-17 95.1 403 28.8
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 2.2e-17 94.7 384 30.5
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 2.2e-17 94.7 354 30.2
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.7e-17 94.0 68 54.4
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 3.7e-17 94.0 345 32.5
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 6.4e-17 93.2 282 31.2
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 8.3e-17 92.8 270 31.9
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 8.3e-17 92.8 270 31.9
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.1e-16 92.4 297 30.6
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 1.1e-16 92.4 294 32.0
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 1.1e-16 92.4 450 30.4
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 1.4e-16 92.0 301 29.9
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 1.9e-16 91.7 274 30.7
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 2.4e-16 91.3 407 30.7
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 3.2e-16 90.9 141 39.7
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 4.1e-16 90.5 347 29.7
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.1e-15 88.2 340 31.2
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.1e-15 88.2 148 37.8
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.5e-15 87.4 411 29.9
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 3.5e-15 87.4 396 28.8
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 4.6e-15 87.0 316 32.0
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 7.8e-15 86.3 497 28.2
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 7.8e-15 86.3 475 29.9
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 1.0e-14 85.9 242 34.7
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 1.3e-14 85.5 512 26.0
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.3e-14 85.5 242 33.9
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 1.3e-14 85.5 281 31.0
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 2.3e-14 84.7 212 31.1
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 3.0e-14 84.3 451 24.8
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 5.1e-14 83.6 274 35.0
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 6.6e-14 83.2 57 68.4
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 6.6e-14 83.2 57 68.4
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 6.6e-14 83.2 299 28.8
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 8.6e-14 82.8 242 34.3
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 8.6e-14 82.8 356 28.1
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 8.6e-14 82.8 435 24.8
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 8.6e-14 82.8 549 24.6
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 1.1e-13 82.4 407 26.8
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 1.9e-13 81.6 140 46.4
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 2.5e-13 81.3 415 30.8
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 2.5e-13 81.3 81 50.6
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 4.3e-13 80.5 487 26.7
arahy.Tifrunner.gnm1.ann1.6V6YZC Arachis hypogaea HOM05D006920 ORTHO05D005895 4.3e-13 80.5 94 45.7
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.3e-13 80.5 113 41.6
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 4.3e-13 80.5 345 31.6
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 1.6e-12 78.6 372 23.7
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 2.1e-12 78.2 167 37.7
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.8e-12 77.8 274 30.3
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 6.2e-12 76.6 447 26.6
SMO147G0117 Selaginella moellendorffii HOM05D010535 ORTHO05D005895 8.1e-12 76.3 70 44.3
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 1.1e-11 75.9 429 26.6
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 1.8e-11 75.1 308 34.1
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 2.3e-11 74.7 381 28.9
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 2.3e-11 74.7 465 28.6
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 2.3e-11 74.7 414 26.8
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 2.3e-11 74.7 443 26.4
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 5.2e-11 73.6 253 29.6
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 5.2e-11 73.6 362 28.7
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 6.8e-11 73.2 269 28.3
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 1.2e-10 72.4 496 25.0
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 1.5e-10 72.0 292 30.8
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 1.5e-10 72.0 212 30.2
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 2.0e-10 71.6 187 32.1
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 2.0e-10 71.6 214 28.0
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 2.6e-10 71.2 268 31.0
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 3.4e-10 70.9 54 66.7
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 3.4e-10 70.9 114 44.7
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 1.7e-09 68.6 165 35.8
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 1.4e-08 65.5 314 28.0
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 1.9e-08 65.1 230 30.4
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 4.1e-08 63.9 56 53.6
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 7.1e-08 63.2 341 27.9
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 1.2e-07 62.4 289 27.0
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.6e-07 62.0 235 33.2
Os01g0572100 Oryza sativa ssp. japonica HOM05D006920 ORTHO05D005895 2.1e-07 61.6 246 30.1
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 7.8e-07 59.7 131 30.5
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 1.0e-06 59.3 371 29.4
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 1.3e-06 58.9 396 23.5
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 1.3e-06 58.9 570 25.8


User provided reference genes

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