Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 3.7e-54 214.5 103 100.0
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.3e-30 136.3 120 61.7
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 6.6e-27 124.0 97 63.9
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-25 119.4 65 87.7
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.2e-25 117.5 64 87.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.4e-23 111.7 58 93.1
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 9.2e-21 103.6 60 85.0
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 5.1e-19 97.8 53 86.8
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 8.1e-17 90.5 51 80.4
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-16 87.8 55 74.5
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.6e-15 85.5 49 79.6
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.2e-14 82.4 44 84.1
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-11 73.2 35 100.0
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 5.1e-11 71.2 35 97.1
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 8.7e-11 70.5 34 97.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.7e-11 70.5 34 97.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.9e-10 69.3 34 94.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 2.5e-10 68.9 36 88.9
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 9.6e-10 67.0 33 93.9
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 9.6e-10 67.0 33 93.9
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 9.6e-10 67.0 33 93.9
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-09 66.6 32 96.9
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-09 66.6 32 96.9
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.3e-09 66.6 32 96.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.3e-09 66.6 32 96.9
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.3e-09 66.6 32 96.9
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.6e-09 66.2 37 81.1
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.8e-09 65.5 31 96.8
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.8e-09 65.5 31 96.8
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.8e-09 65.5 32 93.8
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.8e-09 65.5 32 93.8
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.8e-09 65.5 34 88.2
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 6.2e-09 64.3 31 93.5
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.1e-08 63.5 33 87.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-08 63.5 36 80.6
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.8e-08 62.8 34 85.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.4e-08 62.4 34 85.3
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.4e-08 62.4 31 90.3
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.4e-08 62.4 31 90.3
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 3.1e-08 62.0 33 87.9
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 3.1e-08 62.0 37 78.4
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 3.1e-08 62.0 33 84.8
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 4.0e-08 61.6 34 79.4
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 4.0e-08 61.6 35 80.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 5.3e-08 61.2 33 84.8
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 6.9e-08 60.8 33 81.8
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 9.0e-08 60.5 33 81.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 9.0e-08 60.5 32 84.4
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 9.0e-08 60.5 31 87.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 9.0e-08 60.5 33 84.8
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.2e-07 60.1 31 87.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.2e-07 60.1 32 84.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.2e-07 60.1 32 87.5
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.2e-07 60.1 32 87.5
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.5e-07 59.7 33 81.8
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.5e-07 59.7 33 81.8
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.0e-07 59.3 31 83.9
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.0e-07 59.3 31 83.9
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.6e-07 58.9 31 83.9
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.6e-07 58.9 30 86.7
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 3.4e-07 58.5 30 90.0
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 3.4e-07 58.5 31 83.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 3.4e-07 58.5 31 83.9
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 3.4e-07 58.5 34 73.5
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.4e-07 58.5 31 80.6
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 3.4e-07 58.5 35 71.4
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 4.5e-07 58.2 30 83.3
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 5.8e-07 57.8 31 80.6
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 5.8e-07 57.8 30 83.3
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 5.8e-07 57.8 31 80.6
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 5.8e-07 57.8 29 86.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.6e-07 57.4 31 83.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.6e-07 57.4 31 83.9
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 7.6e-07 57.4 31 80.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 9.9e-07 57.0 30 83.3
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 9.9e-07 57.0 30 83.3
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.9e-07 57.0 31 80.6
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.9e-07 57.0 31 80.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 9.9e-07 57.0 30 83.3
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 9.9e-07 57.0 30 83.3
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.3e-06 56.6 30 80.0
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.3e-06 56.6 31 77.4
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.3e-06 56.6 31 77.4
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.3e-06 56.6 30 83.3
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.3e-06 56.6 31 77.4
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.3e-06 56.6 30 80.0
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.7e-06 56.2 106 34.9
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.7e-06 56.2 30 80.0
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.7e-06 56.2 33 72.7
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.2e-06 55.8 31 77.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.2e-06 55.8 30 80.0
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.9e-06 55.5 103 31.1
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.8e-06 55.1 30 76.7
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.8e-06 55.1 28 89.3
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.8e-06 55.1 28 89.3
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.8e-06 55.1 28 89.3
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.8e-06 55.1 28 89.3
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.8e-06 55.1 28 89.3
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.8e-06 55.1 28 89.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.8e-06 55.1 30 76.7
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.9e-06 54.7 31 77.4
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.9e-06 54.7 30 76.7
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.4e-06 54.3 30 80.0
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 6.4e-06 54.3 30 73.3
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 6.4e-06 54.3 30 73.3
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 6.4e-06 54.3 28 85.7
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 6.4e-06 54.3 30 73.3
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 6.4e-06 54.3 28 85.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 8.4e-06 53.9 30 80.0
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 8.4e-06 53.9 28 85.7
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 8.4e-06 53.9 28 85.7


User provided reference genes

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