Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 0.0e+00 1388.6 854 100.0
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 0.0e+00 1115.5 886 82.4
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 0.0e+00 1096.6 859 81.8
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 0.0e+00 1090.9 859 80.9
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 0.0e+00 1088.9 859 81.5
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 0.0e+00 1086.2 858 81.1
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.2e-275 953.4 902 70.3
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 1.3e-266 923.3 675 77.8
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 9.3e-260 900.6 862 70.8
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 2.4e-223 779.6 719 76.5
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 1.9e-180 637.1 921 55.5
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 1.3e-173 614.4 677 69.1
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 8.7e-173 611.7 895 55.1
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 2.0e-132 477.6 652 47.9
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 2.4e-130 470.7 703 47.2
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 1.0e-128 465.3 903 45.1
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 2.9e-128 463.8 748 45.1
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.5e-127 460.7 636 47.5
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 2.3e-125 454.1 550 51.6
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 1.1e-122 445.3 708 43.9
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 1.4e-122 444.9 699 43.8
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.8e-122 444.5 694 45.4
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 3.5e-121 440.3 689 43.8
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 8.5e-120 435.6 925 43.9
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 5.5e-119 433.0 697 44.3
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 1.2e-118 431.8 663 46.0
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 2.7e-118 430.6 747 45.0
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 8.0e-118 429.1 711 43.9
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 1.3e-115 421.8 775 41.8
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 6.3e-115 419.5 702 43.3
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 8.2e-115 419.1 701 43.7
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 2.0e-113 414.5 715 43.9
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 3.5e-113 413.7 721 42.7
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 5.9e-113 412.9 531 48.4
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 8.5e-112 409.1 720 43.8
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 8.5e-112 409.1 713 42.9
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 8.5e-112 409.1 793 41.0
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 1.5e-111 408.3 691 45.3
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 1.9e-111 407.9 705 42.7
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.7e-110 404.1 722 43.4
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 3.6e-110 403.7 650 42.8
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 3.6e-110 403.7 711 43.3
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.6e-108 397.5 715 41.7
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 7.5e-108 396.0 760 41.3
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 3.7e-107 393.7 662 43.4
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 4.8e-107 393.3 693 42.1
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.4e-106 391.7 657 43.8
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 4.1e-106 390.2 680 43.5
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.2e-105 388.7 684 43.4
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 2.7e-105 387.5 668 43.4
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.5e-105 386.7 685 43.1
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 5.0e-104 383.3 724 40.5
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 5.2e-101 373.2 707 42.3
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 6.8e-101 372.9 743 39.3
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 3.7e-99 367.1 767 38.5
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 6.3e-99 366.3 688 41.0
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.1e-98 365.5 704 41.9
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 1.8e-98 364.8 781 38.2
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 9.2e-98 362.5 919 39.3
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.2e-97 362.1 590 41.9
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.7e-97 360.9 747 41.5
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 5.0e-96 356.7 721 38.4
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 1.0e-93 349.0 745 39.1
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 2.6e-92 344.4 707 38.3
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 8.3e-91 339.3 556 44.8
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 1.1e-87 328.9 746 37.4
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.5e-87 328.6 616 40.9
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.1e-85 322.4 522 44.6
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 5.8e-84 316.6 549 43.0
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.7e-83 315.1 643 38.3
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 4.9e-83 313.5 770 34.9
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.4e-82 311.2 551 44.5
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 5.4e-82 310.1 674 37.2
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 8.6e-80 302.8 657 39.9
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 3.6e-78 297.4 569 41.3
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 1.4e-77 295.4 503 41.7
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 2.3e-77 294.7 526 43.5
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 6.8e-77 293.1 529 43.1
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 6.8e-77 293.1 798 34.3
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 7.5e-76 289.7 563 41.7
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 2.2e-75 288.1 743 36.1
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 5.4e-74 283.5 544 42.1
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 7.1e-74 283.1 516 42.6
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 2.1e-73 281.6 580 41.9
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 5.1e-72 276.9 625 39.4
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 2.2e-67 261.5 722 32.8
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 6.4e-67 260.0 775 31.9
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.2e-65 255.8 316 48.4
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.3e-64 252.3 505 40.8
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 1.1e-63 249.2 513 38.8
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 8.4e-59 233.0 599 36.6
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 3.2e-58 231.1 329 47.7
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 7.1e-58 229.9 495 38.6
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.7e-57 228.0 335 43.3
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 1.6e-54 218.8 148 73.0
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 2.4e-53 214.9 508 38.4
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 2.0e-52 211.8 507 38.7
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 1.3e-51 209.1 720 30.8
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 8.4e-43 179.9 319 42.0
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 6.7e-40 170.2 392 36.7
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 6.7e-40 170.2 361 39.9
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.9e-39 168.7 350 36.3
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.6e-30 139.0 148 53.4
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 4.8e-30 137.5 142 52.8
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 4.1e-29 134.4 147 53.7
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 9.0e-29 133.3 148 50.0
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 1.3e-27 129.4 541 29.9
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 8.5e-27 126.7 148 49.3
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 7.2e-26 123.6 148 45.9
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 3.6e-25 121.3 136 50.7
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.0e-24 119.8 147 49.7
BcaB08g35874 Brassica carinata HOM05D006512 ORTHO05D008027 2.3e-24 118.6 385 35.8
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 6.7e-24 117.1 150 44.7
BcaC01g06346 Brassica carinata HOM05D006512 ORTHO05D008027 3.2e-18 98.2 80 67.5
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-10 72.0 80 50.0
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 9.4e-10 70.1 68 48.5
C09p45890 Brassica napus HOM05D006512 ORTHO05D008027 1.2e-09 69.7 48 75.0
BcaC01g02979 Brassica carinata HOM05D014849 ORTHO05D016773 4.7e-09 67.8 57 61.4
BcaC05g27764 Brassica carinata HOM05D014849 ORTHO05D016773 4.7e-09 67.8 57 61.4
C03p57530 Brassica napus HOM05D014849 ORTHO05D016773 4.7e-09 67.8 57 61.4
C05p37640 Brassica napus HOM05D014849 ORTHO05D016773 4.7e-09 67.8 57 61.4
BolC3t18029H Brassica oleracea HOM05D014849 ORTHO05D016773 4.7e-09 67.8 57 61.4
BolC5t32504H Brassica oleracea HOM05D014849 ORTHO05D016773 8.0e-09 67.0 45 73.3
A09p24940 Brassica napus HOM05D014849 ORTHO05D016773 1.4e-08 66.2 56 60.7
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 1.5e-07 62.8 79 48.1
BolC1t01000H Brassica oleracea HOM05D014849 ORTHO05D016773 2.6e-07 62.0 55 58.2
BcaC04g20270 Brassica carinata HOM05D006512 ORTHO05D008027 4.4e-07 61.2 60 58.3
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 5.7e-07 60.8 56 57.1
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 5.7e-07 60.8 56 57.1


User provided reference genes

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