Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 4.7e-189 664.5 359 100.0
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.5e-179 632.9 360 95.6
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 2.6e-179 632.1 360 95.3
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.3e-178 629.8 361 95.3
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.1e-174 616.7 382 90.1
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 1.3e-173 613.2 387 88.6
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 6.2e-173 610.9 359 92.5
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 9.0e-172 607.1 359 91.1
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 3.9e-167 591.7 359 90.3
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 2.5e-166 589.0 359 88.0
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 4.3e-166 588.2 359 89.1
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.8e-165 585.5 359 89.1
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 3.5e-160 568.5 363 86.8
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.4e-137 493.4 365 78.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 8.0e-128 461.1 359 71.9
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 2.3e-127 459.5 367 72.8
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 1.7e-125 453.4 359 72.1
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 2.2e-125 453.0 353 73.1
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 6.3e-125 451.4 302 82.5
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 8.2e-125 451.1 366 71.9
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 2.4e-124 449.5 311 80.7
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.6e-123 446.8 370 70.5
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 1.6e-123 446.8 366 70.2
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 2.6e-123 446.0 363 71.9
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 4.5e-123 445.3 363 71.1
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.0e-122 444.1 365 71.2
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.3e-122 443.7 337 76.0
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.7e-122 443.4 304 80.9
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 2.2e-122 443.0 288 82.3
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 3.8e-122 442.2 291 82.1
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 6.5e-122 441.4 314 77.7
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 8.5e-122 441.0 308 78.2
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.9e-121 439.9 321 76.3
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.9e-121 439.9 301 81.1
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 1.9e-121 439.9 301 81.1
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 1.9e-121 439.9 286 82.5
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 4.2e-121 438.7 386 67.4
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 5.5e-121 438.3 301 80.7
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 7.2e-121 438.0 291 82.5
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 7.2e-121 438.0 303 80.5
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 9.4e-121 437.6 291 82.1
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 9.4e-121 437.6 386 67.1
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.2e-120 437.2 304 77.6
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.6e-120 436.8 311 75.6
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.6e-120 436.8 311 77.2
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.6e-120 436.8 288 79.9
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.6e-120 436.8 321 75.1
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 2.7e-120 436.0 291 82.1
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 2.7e-120 436.0 289 80.6
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.7e-120 436.0 291 82.1
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.6e-120 435.6 264 87.9
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 4.7e-120 435.3 311 76.8
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 4.7e-120 435.3 307 77.5
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 6.1e-120 434.9 293 81.6
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 8.0e-120 434.5 302 78.8
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 8.0e-120 434.5 265 87.9
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 8.0e-120 434.5 291 81.1
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 8.0e-120 434.5 289 83.7
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.0e-119 434.1 311 75.2
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 1.0e-119 434.1 340 71.2
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.3e-119 433.0 298 79.9
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 5.2e-119 431.8 307 78.2
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 5.2e-119 431.8 289 81.3
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 5.2e-119 431.8 333 72.4
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 6.7e-119 431.4 263 87.8
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.2e-118 430.6 289 81.0
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.5e-118 430.3 340 72.4
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 5.7e-118 428.3 302 78.1
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.3e-117 427.2 286 80.8
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 2.2e-117 426.4 289 79.2
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.8e-117 426.0 325 72.0
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 8.3e-117 424.5 291 79.7
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.4e-116 422.9 289 78.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 5.3e-116 421.8 316 73.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 5.3e-116 421.8 341 70.1
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.5e-115 419.1 284 81.7
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.9e-114 416.0 289 79.9
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 8.5e-114 414.5 318 72.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.1e-113 414.1 386 65.3
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.5e-113 413.7 294 76.9
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.4e-110 402.5 290 74.8
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 4.4e-110 402.1 318 72.0
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 2.2e-109 399.8 292 74.7
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.8e-109 399.4 280 77.1
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.3e-105 386.0 330 68.8
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 5.5e-105 385.2 400 57.8
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 4.0e-103 379.0 246 83.7
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 2.6e-102 376.3 291 70.1
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 4.9e-101 372.1 238 83.2
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 8.3e-101 371.3 265 77.0
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.1e-100 370.9 352 64.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.4e-100 370.5 267 73.4
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 7.0e-100 368.2 300 70.7
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.6e-99 367.1 283 72.1
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.6e-99 367.1 245 80.4
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 2.0e-99 366.7 271 74.2
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.5e-99 365.5 401 59.4
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 6.6e-98 361.7 395 59.2
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 2.1e-96 356.7 254 77.2
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.0e-95 352.4 225 83.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.8e-94 348.6 258 71.7
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 7.5e-94 348.2 307 65.8
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 3.3e-89 332.8 240 75.4
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 9.5e-89 331.3 316 62.7
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.2e-88 330.9 196 88.3
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 7.5e-86 321.6 276 67.0
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.1e-83 313.5 217 79.7
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 2.3e-79 300.1 262 62.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.2e-72 277.7 247 65.6
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 3.4e-70 269.6 276 56.5
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 1.7e-69 267.3 231 69.7
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 3.8e-69 266.2 245 58.8
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.7e-67 260.0 283 59.0
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 4.3e-65 252.7 231 68.0
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 6.9e-63 245.4 270 55.9
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 4.9e-61 239.2 286 49.7
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.8e-53 213.0 166 71.7
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.2e-51 208.0 140 84.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.4e-47 194.5 135 80.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 5.7e-41 172.6 98 90.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 2.8e-40 170.2 142 71.8
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.1e-36 158.3 204 54.9
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.0e-34 151.8 93 83.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 4.8e-32 142.9 157 56.7
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.4e-31 141.4 157 56.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 8.5e-29 132.1 139 59.7
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.9e-20 104.4 80 67.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 5.7e-17 92.8 96 58.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 1.1e-15 88.6 60 78.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 2.9e-13 80.5 225 32.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.3e-10 70.9 47 76.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.5e-06 56.6 29 100.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 7.7e-06 55.8 31 90.3


User provided reference genes

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