Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22027 Brassica carinata HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 100.0
BcaC03g14439 Brassica carinata HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 85.9
A02p11180 Brassica napus HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 100.0
A10p10780 Brassica napus HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 100.0
C02p18530 Brassica napus HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 85.9
BolC2t07993H Brassica oleracea HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 85.9
BraA02t06181Z Brassica rapa HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 100.0
BraA10t43159Z Brassica rapa HOM05D001384 ORTHO05D001215 7.0e-19 96.7 64 100.0
AL8G27900 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 9.2e-19 96.3 64 84.4
BcaC04g20479 Brassica carinata HOM05D001384 ORTHO05D001215 1.6e-18 95.5 64 98.4
C09p43060 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-18 95.5 64 98.4
BolC9t57176H Brassica oleracea HOM05D001384 ORTHO05D001215 1.6e-18 95.5 64 98.4
BcaC01g06232 Brassica carinata HOM05D001384 ORTHO05D001215 2.0e-18 95.1 64 87.5
BcaC01g06233 Brassica carinata HOM05D001384 ORTHO05D001215 2.0e-18 95.1 64 87.5
BolC3t14192H Brassica oleracea HOM05D001384 ORTHO05D001215 2.0e-18 95.1 64 87.5
BcaB08g35687 Brassica carinata HOM05D001384 ORTHO05D001215 2.7e-18 94.7 64 96.9
A03p15270 Brassica napus HOM05D001384 ORTHO05D001215 3.5e-18 94.4 64 93.8
Carub.0008s1343 Capsella rubella HOM05D001384 ORTHO05D001215 5.9e-18 93.6 64 81.2
Thhalv10015233m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 5.9e-18 93.6 64 81.2
Sp6g15410 Schrenkiella parvula HOM05D001384 ORTHO05D001215 5.9e-18 93.6 64 90.6
BraA03t10820Z Brassica rapa HOM05D001384 ORTHO05D001215 7.8e-18 93.2 64 93.8
AT5G53250 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.7e-17 92.0 64 81.2
CARHR266300 Cardamine hirsuta HOM05D001384 ORTHO05D001215 2.3e-17 91.7 64 95.3
Aa31LG3G9260 Aethionema arabicum HOM05D001384 ORTHO05D001215 2.3e-14 81.6 66 72.7
BcaB01g04237 Brassica carinata HOM05D001384 ORTHO05D001215 6.4e-12 73.6 61 83.6
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 3.0e-09 64.7 63 57.1
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 6.6e-09 63.5 64 51.6
THA.LOC109117149 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 6.6e-09 63.5 66 56.1
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 1.9e-08 62.0 63 55.6
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 3.3e-08 61.2 63 52.4
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 9.5e-08 59.7 63 52.4
PGR142G3584 Punica granatum HOM05D001384 ORTHO05D001215 1.2e-07 59.3 55 67.3
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 58.2
BcaC04g23523 Brassica carinata HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 54.5
A09p06620 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 54.5
C09p07390 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 54.5
BolC9t53653H Brassica oleracea HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 54.5
BraA09t36309Z Brassica rapa HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 54.5
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 1.6e-07 58.9 55 56.4
CARHR189480 Cardamine hirsuta HOM05D001384 ORTHO05D001215 2.1e-07 58.5 55 67.3
THA.LOC104821373 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 2.1e-07 58.5 60 53.3
THA.LOC109116865 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 2.8e-07 58.2 64 50.0
TWI39G0811 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.8e-07 58.2 64 59.4
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 3.6e-07 57.8 63 49.2
FvH4_7g30990 Fragaria vesca HOM05D001384 ORTHO05D001215 3.6e-07 57.8 55 50.9
Prupe.2G306800 Prunus persica HOM05D001384 ORTHO05D001215 3.6e-07 57.8 55 52.7
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 3.6e-07 57.8 50 62.0
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 4.7e-07 57.4 63 52.4
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 4.7e-07 57.4 54 66.7
AL6G35460 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 6.2e-07 57.0 64 64.1
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 6.2e-07 57.0 54 57.4
Duzib205G1630 Durio zibethinus HOM05D001384 ORTHO05D001215 6.2e-07 57.0 66 65.2
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 6.2e-07 57.0 63 47.6
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 8.1e-07 56.6 54 51.9
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 1.1e-06 56.2 52 63.5
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.1e-06 56.2 53 52.8
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 1.1e-06 56.2 53 52.8
Thecc.09G095500 Theobroma cacao HOM05D001384 ORTHO05D001215 1.1e-06 56.2 64 45.3
Thecc.03G192400 Theobroma cacao HOM05D001384 ORTHO05D001215 1.4e-06 55.8 64 46.9
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.4e-06 55.8 63 61.9
C03p17850 Brassica napus HOM05D001384 ORTHO05D001215 1.8e-06 55.5 41 78.0
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 1.8e-06 55.5 63 46.0
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.8e-06 55.5 61 60.7
HanXRQChr10g0319041 Helianthus annuus HOM05D001384 ORTHO05D001215 1.8e-06 55.5 55 54.5
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 1.8e-06 55.5 64 48.4
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 1.8e-06 55.5 66 50.0
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.8e-06 55.5 62 59.7
FAN06G1205 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.3e-06 55.1 57 49.1
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.3e-06 55.1 61 45.9
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.3e-06 55.1 61 45.9
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.3e-06 55.1 61 45.9
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 3.1e-06 54.7 56 51.8
Glyma.11G018900 Glycine max HOM05D001384 ORTHO05D001215 3.1e-06 54.7 62 54.8
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.1e-06 54.7 54 50.0
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 3.1e-06 54.7 53 50.9
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 3.1e-06 54.7 54 68.5
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 4.0e-06 54.3 54 50.0
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 4.0e-06 54.3 61 47.5
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 4.0e-06 54.3 54 48.1
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 4.0e-06 54.3 53 50.9
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 4.0e-06 54.3 54 53.7
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 5.2e-06 53.9 54 50.0
A06p34940 Brassica napus HOM05D001384 ORTHO05D001215 5.2e-06 53.9 54 53.7
C07p43610 Brassica napus HOM05D001384 ORTHO05D001215 5.2e-06 53.9 54 53.7
BolC7t44888H Brassica oleracea HOM05D001384 ORTHO05D001215 5.2e-06 53.9 54 53.7
BraA06t26418Z Brassica rapa HOM05D001384 ORTHO05D001215 5.2e-06 53.9 55 52.7
FAN06G2829 Fragaria x ananassa HOM05D001384 ORTHO05D001215 5.2e-06 53.9 57 49.1
Phvul.002G162600 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 5.2e-06 53.9 61 54.1
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 5.2e-06 53.9 63 63.5
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 5.2e-06 53.9 50 66.0
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 5.2e-06 53.9 53 50.9
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 51.9
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 50.0
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.8e-06 53.5 54 50.0
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 8.9e-06 53.1 63 46.0
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.9e-06 53.1 61 44.3
Potri.015G022600 Populus trichocarpa HOM05D001384 ORTHO05D001215 8.9e-06 53.1 55 49.1


User provided reference genes

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