Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 0.0e+00 1174.1 570 100.0
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 0.0e+00 1120.1 570 95.6
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 0.0e+00 1120.1 570 95.8
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 0.0e+00 1116.7 570 95.8
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 0.0e+00 1099.7 571 94.0
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 0.0e+00 1092.0 571 92.8
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 0.0e+00 1092.0 571 93.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 0.0e+00 1092.0 571 93.3
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 0.0e+00 1085.9 571 92.6
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 0.0e+00 1085.9 571 92.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 7.5e-306 1053.1 571 89.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 4.0e-291 1004.2 565 86.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 4.7e-284 980.7 568 82.0
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 4.7e-284 980.7 557 83.5
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.8e-283 978.8 557 83.3
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.4e-283 978.4 557 83.8
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 9.9e-282 973.0 557 83.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-281 972.2 557 83.3
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 3.8e-281 971.1 557 83.5
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 3.8e-281 971.1 558 83.3
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.9e-281 970.7 558 83.3
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.1e-280 969.5 558 83.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.9e-280 968.8 558 83.2
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.9e-280 968.8 560 81.6
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.2e-280 967.6 557 83.1
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 5.4e-280 967.2 557 82.9
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 9.3e-280 966.5 557 82.8
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.2e-279 966.1 564 80.9
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.7e-279 964.9 561 83.2
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 7.8e-279 963.4 557 81.9
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.0e-278 963.0 559 83.0
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.7e-278 962.2 557 81.9
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 5.1e-278 960.7 557 81.7
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 6.6e-278 960.3 567 81.1
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.9e-277 958.7 576 79.2
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 4.3e-277 957.6 559 82.3
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 7.3e-277 956.8 557 81.7
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.6e-276 955.7 572 79.7
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.6e-276 954.5 557 81.3
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 4.8e-276 954.1 557 81.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 6.2e-276 953.7 560 80.7
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 8.1e-276 953.4 560 81.4
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.1e-275 953.0 557 81.0
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.1e-275 953.0 554 81.9
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.1e-275 953.0 560 81.1
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.0e-275 951.0 557 81.3
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 6.9e-275 950.3 557 81.0
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 2.6e-274 948.3 557 81.1
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 4.4e-274 947.6 561 80.6
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 5.8e-274 947.2 557 80.4
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 7.6e-274 946.8 557 80.1
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 7.6e-274 946.8 557 80.6
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 4.9e-273 944.1 559 81.2
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 8.4e-273 943.3 572 79.4
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.1e-272 943.0 561 79.5
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 2.4e-272 941.8 557 80.6
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 5.4e-272 940.6 557 80.1
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 7.1e-272 940.3 559 79.8
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.1e-272 940.3 557 80.4
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 3.5e-271 937.9 557 79.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.6e-271 937.6 557 79.9
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.6e-271 937.6 557 80.4
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 3.0e-270 934.9 556 80.4
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.9e-270 934.5 560 78.8
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-269 932.6 560 80.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.9e-269 932.2 557 79.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.9e-269 932.2 581 77.5
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.3e-268 929.5 554 80.0
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.6e-268 929.1 555 80.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.6e-268 929.1 560 78.4
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.1e-268 928.7 557 79.4
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 3.6e-268 927.9 587 76.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 6.2e-268 927.2 557 78.8
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.1e-267 924.9 557 78.8
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 3.1e-267 924.9 555 79.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 6.9e-267 923.7 556 78.4
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 3.4e-266 921.4 550 79.3
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.5e-266 921.0 563 78.0
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 4.2e-264 914.4 554 78.7
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 4.6e-263 911.0 554 77.4
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 3.0e-262 908.3 558 77.8
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 8.7e-262 906.7 557 77.4
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 5.6e-261 904.0 577 74.9
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 5.6e-261 904.0 557 77.4
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.3e-260 902.9 577 75.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.6e-260 902.5 549 78.3
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 2.1e-260 902.1 557 77.0
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.7e-260 901.4 551 77.9
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.5e-258 896.0 553 76.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.3e-257 892.9 551 77.9
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 6.5e-257 890.6 507 83.6
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.2e-256 887.9 557 76.1
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.7e-255 885.2 521 81.0
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.3e-254 882.1 562 76.5
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 8.2e-252 873.6 550 75.6
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 5.0e-249 864.4 557 75.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.7e-247 858.6 560 75.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.7e-241 839.3 551 73.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.4e-240 836.3 563 73.5
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 1.4e-240 836.3 553 72.7
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 7.2e-240 833.9 557 73.1
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 7.2e-240 833.9 557 72.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 7.9e-239 830.5 505 77.0
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.9e-239 830.5 546 72.5
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-238 830.1 546 72.5
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.0e-234 815.8 561 72.4
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 2.2e-233 812.4 567 69.8
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 2.1e-231 805.8 557 69.5
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.1e-224 783.5 552 70.7
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.4e-222 776.5 463 81.6
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 5.2e-222 774.6 511 73.8
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 7.5e-221 770.8 560 68.2
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 5.3e-219 764.6 556 67.1
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 2.7e-215 752.3 548 66.4
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 6.1e-215 751.1 546 65.4
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 3.1e-211 738.8 431 82.1
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.3e-209 733.4 432 81.7
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 5.7e-205 718.0 543 63.9
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.4e-203 712.6 547 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.9e-200 703.0 546 62.6
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.7e-191 671.8 539 62.0
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.7e-191 671.8 539 62.0
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.0e-189 666.4 617 58.5
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 4.9e-164 582.0 337 82.8
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.5e-157 560.5 330 80.3
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.9e-147 526.9 562 53.7
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.4e-142 510.8 292 83.9
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.0e-140 504.6 553 48.3
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.4e-126 456.8 314 70.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.4e-126 456.8 309 72.8
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 2.3e-121 440.3 358 64.0
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.1e-94 349.7 207 81.2
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 7.2e-91 339.0 200 82.5
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.0e-81 308.5 517 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 7.5e-64 249.2 343 42.3
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 9.2e-62 242.3 129 90.7
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 5.1e-60 236.5 137 84.7
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.8e-57 228.0 127 87.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.8e-57 228.0 127 87.4
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.6e-56 224.2 133 80.5
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-55 221.9 120 88.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.3e-55 221.9 120 88.3
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.7e-53 214.2 139 73.4
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-52 211.8 119 86.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.3e-52 211.8 119 86.6
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 7.6e-48 196.1 111 79.3
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.4e-46 189.9 114 74.6
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 2.7e-45 187.6 104 77.9
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-40 172.2 115 70.4
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 7.9e-37 159.5 90 77.8
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.5e-35 154.5 76 90.8
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 3.2e-30 137.5 79 82.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 2.0e-24 118.2 118 49.2
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.6e-24 117.9 86 64.0
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.0e-23 115.9 188 41.5
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 1.3e-23 115.5 121 49.6
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 5.7e-19 100.1 62 72.6
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.9e-14 85.1 63 66.7


User provided reference genes

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