Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2921.0 1467 100.0
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2711.0 1514 92.0
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2707.9 1512 92.1
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2675.6 1501 90.1
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2656.3 1488 90.0
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2627.4 1542 87.8
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2612.8 1477 89.3
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2603.5 1497 88.2
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2574.3 1508 86.3
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2573.9 1503 87.2
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2570.0 1504 86.8
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2553.5 1504 86.2
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2520.3 1502 85.9
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2510.7 1504 84.6
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2509.9 1523 84.8
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2459.9 1536 82.9
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2358.2 1557 78.7
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2330.1 1509 78.5
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 1922.5 1519 65.4
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 1912.1 1520 65.4
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 1894.0 1540 64.0
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1893.6 1518 64.7
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 1890.2 1518 64.6
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 1886.7 1520 64.8
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 1885.9 1519 64.3
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 1884.8 1523 63.2
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 1875.5 1517 64.3
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 1870.5 1531 63.9
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 1869.0 1524 64.3
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 1867.4 1622 61.2
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1864.4 1522 63.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 1861.7 1525 64.2
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 1860.9 1520 63.8
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 1853.6 1523 63.4
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 1850.1 1525 62.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1848.9 1525 62.6
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 1843.2 1520 63.2
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 1833.2 1521 62.1
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1831.2 1539 61.7
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1827.4 1527 62.0
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 1823.5 1521 61.7
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 1815.8 1521 63.1
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 1810.8 1524 61.8
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 1809.3 1518 61.6
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 1808.9 1517 61.3
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 1808.1 1516 61.3
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 1806.6 1618 59.9
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 1804.3 1520 61.2
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 1804.3 1531 60.7
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1803.9 1524 61.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 1802.3 1518 61.7
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 1797.7 1519 62.3
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 1796.9 1543 60.6
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 1795.8 1519 61.2
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1794.2 1515 61.1
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 1792.7 1624 59.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 1790.8 1622 59.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1789.2 1526 61.1
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 1788.9 1517 60.9
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 1788.5 1584 59.9
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1771.1 1515 60.4
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 1763.8 1515 61.2
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 1749.9 1514 60.4
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 1746.5 1517 60.4
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 1745.3 1520 59.7
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1743.8 1514 59.8
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 1742.2 1517 60.3
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 1732.6 1520 59.5
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 1732.2 1522 59.6
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 1723.0 1515 59.7
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 1713.0 1518 59.6
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 1708.3 1522 59.4
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 1708.0 1421 62.1
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1688.7 1508 58.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 1680.6 1413 62.6
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 1642.5 1517 57.0
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 1642.5 1286 65.9
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 1620.9 1637 53.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 1611.3 1535 56.0
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1595.1 1543 56.5
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1578.9 1518 54.9
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1568.5 1542 56.3
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1531.2 1487 55.2
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1453.0 1326 57.6
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1451.4 1145 65.6
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1381.7 1407 53.9
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1332.4 1162 60.5
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1240.3 901 68.5
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1232.2 1516 47.4
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1184.9 1049 59.0
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1183.3 912 64.6
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1127.9 1584 41.2
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1083.6 1589 39.8
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1078.5 1585 40.9
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.5e-305 1053.5 1482 42.5
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 1.0e-298 1030.8 1212 47.1
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.5e-289 999.6 1151 48.5
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 4.1e-271 939.1 658 72.6
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 2.0e-270 936.8 782 63.4
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.1e-263 914.4 1025 50.6
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 4.5e-254 882.5 911 53.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 2.2e-240 837.0 577 71.6
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 3.3e-228 796.6 810 53.3
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 2.1e-227 793.9 1931 31.7
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 1.1e-215 755.0 630 60.5
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 9.5e-212 741.9 578 62.8
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 3.7e-187 660.2 643 55.8
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 7.9e-166 589.3 625 52.6
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 7.4e-164 582.8 444 66.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.7e-153 546.2 852 42.0
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.3e-152 545.4 395 69.1
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.6e-150 538.5 539 52.3
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.7e-147 527.3 416 62.0
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.5e-144 516.5 546 52.9
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.1e-142 511.5 1066 34.4
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.9e-136 491.1 729 40.5
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.1e-130 470.7 706 40.4
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.0e-125 456.1 399 56.9
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.8e-125 455.3 435 55.4
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-121 442.6 439 53.5
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.3e-117 428.3 530 45.7
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.4e-109 402.5 510 44.9
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.3e-99 369.4 413 49.4
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 7.8e-97 360.1 818 32.4
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 4.7e-94 350.9 331 56.8
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 4.4e-92 344.4 397 50.1
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.2e-91 342.0 213 78.4
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 8.4e-91 340.1 314 55.4
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.3e-88 332.8 338 53.8
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-87 329.3 387 51.4
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 5.8e-84 317.4 206 74.8
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 8.1e-78 297.0 233 64.8
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.2e-75 288.9 193 77.2
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.1e-72 277.7 776 29.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.3e-71 275.0 418 39.2
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 8.2e-62 243.8 362 40.1
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 2.5e-58 232.3 186 65.1
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.0e-51 210.3 164 62.2
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 2.8e-38 165.6 272 38.2
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 8.2e-38 164.1 133 59.4
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 1.4e-37 163.3 92 81.5
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.2e-35 156.0 230 41.7
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 1.1e-31 143.7 101 69.3
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 7.4e-31 141.0 127 58.3
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 7.4e-31 141.0 222 38.7
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 2.2e-30 139.4 119 66.4
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.5e-28 132.1 154 49.4
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 7.7e-28 131.0 215 37.2
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.0e-27 130.6 297 32.7
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-27 130.2 106 63.2
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.4e-24 120.2 123 50.4
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 6.7e-24 117.9 107 55.1
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 4.8e-22 111.7 109 59.6
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 6.3e-22 111.3 172 37.2
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 4.1e-21 108.6 165 39.4
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 5.9e-20 104.8 59 79.7
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 1.3e-19 103.6 128 43.0
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 4.2e-18 98.6 95 50.5
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 9.4e-18 97.4 54 79.6
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 9.4e-18 97.4 163 38.7
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.5e-15 90.1 165 43.0
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 5.7e-15 88.2 86 53.5
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 1.7e-14 86.7 76 59.2
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 6.3e-14 84.7 73 54.8
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.1e-13 84.0 73 57.5
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 1.8e-13 83.2 73 61.6
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 3.1e-13 82.4 71 60.6
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 9.1e-13 80.9 79 57.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.2e-12 80.5 83 44.6
BcaB01g05925 Brassica carinata HOM05D003492 ORTHO05D092842 1.9e-10 73.2 45 77.8
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.8e-09 69.3 60 58.3
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.0e-08 65.9 101 41.6
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 6.3e-06 58.2 72 43.1


User provided reference genes

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