Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21655 Brassica carinata HOM05D004581 ORTHO05D006211 5.0e-166 587.8 318 100.0
Thhalv10012676m.g Eutrema salsugineum HOM05D004581 ORTHO05D006211 4.1e-136 488.4 296 85.5
Sp6g36190 Schrenkiella parvula HOM05D004581 ORTHO05D006211 1.2e-135 486.9 296 85.1
CARHR206520 Cardamine hirsuta HOM05D004581 ORTHO05D006211 1.1e-133 480.3 292 84.9
AL6G16770 Arabidopsis lyrata HOM05D004581 ORTHO05D006211 2.5e-133 479.2 292 86.0
Carub.0006s0556 Capsella rubella HOM05D004581 ORTHO05D006211 9.5e-133 477.2 292 84.2
AT5G06680 Arabidopsis thaliana HOM05D004581 ORTHO05D006211 4.7e-132 474.9 292 84.6
Aa31sc40G20 Aethionema arabicum HOM05D004581 ORTHO05D006211 5.2e-131 471.5 291 83.2
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 1.9e-125 453.0 292 84.2
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 1.4e-123 446.8 300 80.7
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 1.2e-122 443.7 300 80.3
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 4.4e-122 441.8 291 78.0
COL.COLO4_29354 Corchorus olitorius HOM05D004581 ORTHO05D006211 2.4e-120 436.0 296 75.0
Gohir.D04G089200 Gossypium hirsutum HOM05D004581 ORTHO05D006211 2.4e-120 436.0 296 74.7
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 2.4e-120 436.0 296 75.3
Gorai.012G099300 Gossypium raimondii HOM05D004581 ORTHO05D006211 4.1e-120 435.3 296 74.7
Thecc.05G174500 Theobroma cacao HOM05D004581 ORTHO05D006211 4.1e-120 435.3 296 75.3
Gohir.A04G057400 Gossypium hirsutum HOM05D004581 ORTHO05D006211 7.1e-120 434.5 296 74.0
MD12G1055200 Malus domestica HOM05D004581 ORTHO05D006211 2.1e-119 433.0 296 74.7
MD14G1054400 Malus domestica HOM05D004581 ORTHO05D006211 3.5e-119 432.2 296 74.7
TWI53G1098 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 1.0e-118 430.6 303 72.6
Duzib093G1426 Durio zibethinus HOM05D004581 ORTHO05D006211 1.3e-118 430.3 296 75.0
FvH4_6g21970 Fragaria vesca HOM05D004581 ORTHO05D006211 1.3e-118 430.3 296 75.3
FAN14G2436 Fragaria x ananassa HOM05D004581 ORTHO05D006211 2.3e-118 429.5 296 75.0
FAN05G2417 Fragaria x ananassa HOM05D004581 ORTHO05D006211 3.0e-118 429.1 296 74.3
Ciclev10011052m.g Citrus clementina HOM05D004581 ORTHO05D006211 1.9e-117 426.4 297 74.1
TWI77G0968 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 2.5e-117 426.0 303 71.6
Eucgr.K01849 Eucalyptus grandis HOM05D004581 ORTHO05D006211 7.3e-117 424.5 296 74.0
PGR142G1146 Punica granatum HOM05D004581 ORTHO05D006211 2.8e-116 422.5 303 73.3
Haze_20018 Corylus avellana HOM05D004581 ORTHO05D006211 3.6e-116 422.2 296 73.3
Duzib106G1052 Durio zibethinus HOM05D004581 ORTHO05D006211 8.1e-116 421.0 290 74.5
FAN02G3358 Fragaria x ananassa HOM05D004581 ORTHO05D006211 8.1e-116 421.0 296 74.0
Cfa020147 Carpinus fangiana HOM05D004581 ORTHO05D006211 1.4e-115 420.2 296 73.0
QL07p024331 Quercus lobata HOM05D004581 ORTHO05D006211 1.4e-115 420.2 292 74.3
QL07p024348 Quercus lobata HOM05D004581 ORTHO05D006211 1.4e-115 420.2 292 74.3
QL07p024412 Quercus lobata HOM05D004581 ORTHO05D006211 1.4e-115 420.2 292 74.3
CsaV3_4G031280 Cucumis sativus L. HOM05D004581 ORTHO05D006211 4.0e-115 418.7 298 70.1
MELO3C009016.2 Cucumis melo HOM05D004581 ORTHO05D006211 1.5e-114 416.8 298 69.8
Atru.chr8.1150 Acer truncatum HOM05D004581 ORTHO05D006211 2.6e-114 416.0 294 71.8
CiPaw.10G025500 Carya illinoinensis HOM05D004581 ORTHO05D006211 5.8e-114 414.8 303 70.0
ClCG04G001070 Citrullus lanatus HOM05D004581 ORTHO05D006211 7.6e-114 414.5 299 69.9
Potri.006G194200 Populus trichocarpa HOM05D004581 ORTHO05D006211 9.9e-114 414.1 296 71.6
CANSAT64G2519 Cannabis sativa HOM05D004581 ORTHO05D006211 1.1e-112 410.6 296 70.6
CiPaw.09G028800 Carya illinoinensis HOM05D004581 ORTHO05D006211 1.4e-112 410.2 303 69.6
Sabra06G0149000 Salix brachista HOM05D004581 ORTHO05D006211 3.2e-112 409.1 296 70.6
Sed0021834 Sechium edule HOM05D004581 ORTHO05D006211 1.3e-110 403.7 298 68.8
Lalb_Chr18g0048011 Lupinus albus HOM05D004581 ORTHO05D006211 3.9e-110 402.1 304 68.4
Potri.016G059900 Populus trichocarpa HOM05D004581 ORTHO05D006211 2.5e-109 399.4 296 68.6
Manes.09G037300 Manihot esculenta HOM05D004581 ORTHO05D006211 7.3e-109 397.9 285 71.6
Hund19211 Selenicereus undatus HOM05D004581 ORTHO05D006211 6.2e-108 394.8 293 66.9
Sabra16G0062700 Salix brachista HOM05D004581 ORTHO05D006211 1.4e-107 393.7 296 66.9
EL10Ac2g03990 Beta vulgaris HOM05D004581 ORTHO05D006211 5.8e-106 388.3 293 66.9
TAR623G0668 Trochodendron aralioides HOM05D004581 ORTHO05D006211 3.8e-105 385.6 303 65.3
AUR62015335 Chenopodium quinoa HOM05D004581 ORTHO05D006211 4.9e-105 385.2 293 66.6
Sc25g0005070 Simmondsia chinensis HOM05D004581 ORTHO05D006211 1.1e-104 384.0 300 65.3
arahy.Tifrunner.gnm1.ann1.U2Q4B5 Arachis hypogaea HOM05D004581 ORTHO05D006211 4.6e-103 378.6 305 64.9
arahy.Tifrunner.gnm1.ann1.6E61XV Arachis hypogaea HOM05D004581 ORTHO05D006211 6.0e-103 378.3 305 64.9
Phvul.001G144000 Phaseolus vulgaris HOM05D004581 ORTHO05D006211 1.1e-101 374.0 291 67.0
Nitab4.5_0000663g0140 Nicotiana tabacum HOM05D004581 ORTHO05D006211 1.5e-101 373.6 338 59.8
VMungo1383G1342 Vigna mungo HOM05D004581 ORTHO05D006211 1.9e-101 373.2 292 67.5
Aqoxy1G00145 Aquilegia oxysepala HOM05D004581 ORTHO05D006211 7.3e-101 371.3 318 61.6
vmacro07891 Vaccinium macrocarpon HOM05D004581 ORTHO05D006211 9.6e-101 370.9 371 55.3
Lsat_1_v5_gn_5_165321 Lactuca sativa HOM05D004581 ORTHO05D006211 1.3e-100 370.5 334 60.8
TAR369G0383 Trochodendron aralioides HOM05D004581 ORTHO05D006211 1.3e-100 370.5 310 62.3
MBI19_g17421_MAGBIO Magnolia biondii HOM05D004581 ORTHO05D006211 4.8e-100 368.6 299 62.5
Rhsim03G0004600 Rhododendron simsii HOM05D004581 ORTHO05D006211 1.4e-99 367.1 370 55.4
Nn7g35977 Nelumbo nucifera HOM05D004581 ORTHO05D006211 2.4e-99 366.3 303 61.7
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 5.3e-99 365.2 299 63.9
DCAR_013660 Daucus carota HOM05D004581 ORTHO05D006211 6.9e-99 364.8 322 58.7
Peaxi162Scf00169g01812 Petunia axillaris HOM05D004581 ORTHO05D006211 1.2e-98 364.0 335 60.0
Glyma.03G146200 Glycine max HOM05D004581 ORTHO05D006211 2.9e-97 359.4 291 65.6
Cc06_g15670 Coffea canephora HOM05D004581 ORTHO05D006211 4.9e-97 358.6 369 54.2
Migut.J01852 Erythranthe guttata HOM05D004581 ORTHO05D006211 4.9e-97 358.6 365 54.8
PGSC0003DMG400002716 Solanum tuberosum HOM05D004581 ORTHO05D006211 8.4e-97 357.8 361 55.4
PSO384G2020 Papaver somniferum HOM05D004581 ORTHO05D006211 1.4e-96 357.1 302 60.9
PSO339G4020 Papaver somniferum HOM05D004581 ORTHO05D006211 1.9e-96 356.7 302 60.9
Solyc09g009140.3 Solanum lycopersicum HOM05D004581 ORTHO05D006211 4.2e-96 355.5 361 54.3
Glyma.19G149500 Glycine max HOM05D004581 ORTHO05D006211 7.1e-96 354.8 291 64.6
Lju124A23G70 Lonicera japonica HOM05D004581 ORTHO05D006211 9.3e-96 354.4 328 58.8
SHI31781 Sapria himalayana HOM05D004581 ORTHO05D006211 9.3e-96 354.4 296 61.1
ECA248G3562 Erigeron canadensis HOM05D004581 ORTHO05D006211 1.2e-95 354.0 297 62.0
Sopen09g003860 Solanum pennellii HOM05D004581 ORTHO05D006211 1.6e-95 353.6 361 54.6
HanXRQChr01g0010041 Helianthus annuus HOM05D004581 ORTHO05D006211 2.7e-95 352.8 322 57.8
A10p29710 Brassica napus HOM05D004581 ORTHO05D006211 4.6e-95 352.1 300 66.7
BraA10t45012Z Brassica rapa HOM05D004581 ORTHO05D006211 4.6e-95 352.1 300 66.7
Lj1g0024119 Lotus japonicus HOM05D004581 ORTHO05D006211 6.0e-95 351.7 293 63.5
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 1.3e-94 350.5 298 58.7
SalBow6G0811 Salvia bowleyana HOM05D004581 ORTHO05D006211 5.1e-94 348.6 377 52.5
Nitab4.5_0006360g0040 Nicotiana tabacum HOM05D004581 ORTHO05D006211 1.9e-93 346.7 338 57.4
CSS0001135 Camellia sinensis var. sinensis HOM05D004581 ORTHO05D006211 3.3e-93 345.9 312 59.3
TPR.G35787 Trifolium pratense HOM05D004581 ORTHO05D006211 7.4e-93 344.7 301 59.5
MSTRG.19916 Avicennia marina HOM05D004581 ORTHO05D006211 4.8e-92 342.0 377 51.5
SGA_v2.0_scaffold105G30506 Striga asiatica HOM05D004581 ORTHO05D006211 6.9e-91 338.2 381 50.7
CDE04G2925 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 6.4e-89 331.6 317 55.5
ATR0598G120 Amborella trichopoda HOM05D004581 ORTHO05D006211 1.9e-88 330.1 325 51.7
Cpa.g.sc85.62 Carica papaya HOM05D004581 ORTHO05D006211 2.1e-87 326.6 292 62.0
unitig_0.g528 Utricularia gibba HOM05D004581 ORTHO05D006211 1.0e-86 324.3 377 48.8
CAN.G824.31 Capsicum annuum HOM05D004581 ORTHO05D006211 2.3e-86 323.2 410 46.8
CDE06G1527 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 7.4e-85 318.2 297 56.6
GSVIVG01033474001 Vitis vinifera HOM05D004581 ORTHO05D006211 6.9e-83 311.6 289 59.5
Mapoly0001s0406 Marchantia polymorpha HOM05D004581 ORTHO05D006211 5.7e-77 292.0 334 47.9
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 7.4e-77 291.6 301 52.8
Os09g0446200 Oryza sativa ssp. japonica HOM05D004581 ORTHO05D006211 1.6e-76 290.4 308 52.6
Pp3c20_16750 Physcomitrium patens HOM05D004581 ORTHO05D006211 1.3e-73 280.8 336 46.1
Pp3c24_16220 Physcomitrium patens HOM05D004581 ORTHO05D006211 1.4e-72 277.3 344 43.9
HPP92_028667 Vanilla planifolia HOM05D004581 ORTHO05D006211 2.1e-71 273.5 293 53.2
Lsat_1_v5_gn_9_26020 Lactuca sativa HOM05D004581 ORTHO05D006211 1.0e-70 271.2 304 49.3
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 3.0e-70 269.6 294 49.0
Actinidia14374 Actinidia chinensis HOM05D004581 ORTHO05D006211 8.5e-65 251.5 189 69.3
Actinidia14375 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.9e-64 250.4 298 52.7
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 2.8e-60 236.5 293 45.7
Oeu034269.1 Olea europaea HOM05D004581 ORTHO05D006211 1.6e-55 220.7 254 49.2
Actinidia22053 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.0e-54 218.0 321 48.9
HanXRQChr15g0491321 Helianthus annuus HOM05D004581 ORTHO05D006211 7.4e-53 211.8 300 44.3
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 3.1e-51 206.5 127 81.1
Ah.13g075710 Amaranthus hybridus HOM05D004581 ORTHO05D006211 2.8e-44 183.3 113 80.5
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 1.8e-43 180.6 316 36.4
Dinv16368 Davidia involucrata HOM05D004581 ORTHO05D006211 7.7e-42 175.3 108 80.6
Psat3g067160 Pisum sativum HOM05D004581 ORTHO05D006211 2.6e-37 160.2 113 72.6
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 2.0e-34 150.6 373 30.6
Actinidia32405 Actinidia chinensis HOM05D004581 ORTHO05D006211 5.7e-29 132.5 144 51.4
HPP92_028618 Vanilla planifolia HOM05D004581 ORTHO05D006211 3.5e-26 123.2 116 51.7
BcaC06g32554 Brassica carinata HOM05D004581 ORTHO05D006211 5.6e-24 115.9 115 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2103 Anthoceros agrestis HOM05D004581 ORTHO05D006211 1.2e-23 114.8 81 70.4
Cre11.g467745 Chlamydomonas reinhardtii HOM05D004581 ORTHO05D006211 2.2e-20 104.0 165 41.2
Actinidia22052 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.8e-14 84.3 89 59.6
Oeu047209.1 Olea europaea HOM05D004581 ORTHO05D006211 2.0e-13 80.9 132 41.7
PRCOL_00005400 Prasinoderma coloniale HOM05D004581 ORTHO05D006211 4.4e-13 79.7 281 24.9
Cfa021858 Carpinus fangiana HOM05D004581 ORTHO05D006211 1.2e-10 71.6 342 22.8
Zm00001eb409410 Zea mays HOM05D004581 ORTHO05D006211 3.3e-08 63.5 53 56.6
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 9.5e-08 62.0 52 61.5


User provided reference genes

Program Settings