Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21174 Brassica carinata HOM05D003027 ORTHO05D003455 3.0e-73 278.5 147 100.0
BraA01t04221Z Brassica rapa HOM05D003027 ORTHO05D003455 8.4e-68 260.4 147 93.2
A09p34290 Brassica napus HOM05D003027 ORTHO05D003455 9.3e-67 256.9 147 93.2
BraA09t38974Z Brassica rapa HOM05D003027 ORTHO05D003455 9.3e-67 256.9 147 93.2
BolC1t05352H Brassica oleracea HOM05D003027 ORTHO05D003455 1.3e-65 253.1 147 93.2
Thhalv10020207m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 3.1e-62 241.9 147 88.4
Sp3g09120 Schrenkiella parvula HOM05D003027 ORTHO05D003455 2.0e-61 239.2 147 88.4
CARHR085360 Cardamine hirsuta HOM05D003027 ORTHO05D003455 7.2e-59 230.7 147 84.4
AL3G22300 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 1.1e-56 223.4 147 83.7
Carub.0003s1003 Capsella rubella HOM05D003027 ORTHO05D003455 5.7e-56 221.1 147 81.6
AT3G10800 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 7.4e-56 220.7 147 83.0
Aa31LG3G3720 Aethionema arabicum HOM05D003027 ORTHO05D003455 4.7e-42 174.9 147 69.4
THA.LOC104816495 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.0e-37 159.5 147 63.9
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 7.2e-35 151.0 152 61.8
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 2.1e-34 149.4 149 61.1
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 4.7e-34 148.3 152 61.2
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 6.1e-34 147.9 150 60.0
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 3.0e-33 145.6 152 60.5
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 5.2e-33 144.8 150 59.3
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 2.0e-32 142.9 149 59.7
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 4.4e-32 141.7 149 57.0
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 5.7e-32 141.4 151 60.3
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 1.3e-31 140.2 146 58.2
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 2.2e-31 139.4 153 58.2
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 2.2e-31 139.4 151 58.3
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 2.2e-31 139.4 146 58.2
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 3.7e-31 138.7 150 59.3
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 3.7e-31 138.7 153 57.5
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 3.7e-31 138.7 147 59.2
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 4.8e-31 138.3 151 58.9
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 4.8e-31 138.3 151 56.3
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 6.3e-31 137.9 147 54.4
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 8.2e-31 137.5 150 59.3
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 1.1e-30 137.1 148 58.1
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 1.1e-30 137.1 152 57.2
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.4e-30 136.7 149 59.1
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 1.4e-30 136.7 149 59.1
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 1.4e-30 136.7 149 59.1
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 3.1e-30 135.6 151 57.6
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 3.1e-30 135.6 151 56.3
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 5.3e-30 134.8 147 58.5
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 5.3e-30 134.8 151 57.6
Lalb_Chr14g0365581 Lupinus albus HOM05D003027 ORTHO05D003455 7.0e-30 134.4 150 58.0
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 9.1e-30 134.0 154 55.8
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 9.1e-30 134.0 151 55.6
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 9.1e-30 134.0 149 59.1
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.2e-29 133.7 153 57.5
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 1.6e-29 133.3 150 55.3
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 1.6e-29 133.3 150 56.7
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.6e-29 133.3 152 56.6
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 2.0e-29 132.9 150 55.3
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.0e-29 132.9 151 55.6
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.7e-29 132.5 151 55.6
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 4.5e-29 131.7 151 55.6
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 4.5e-29 131.7 151 55.6
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 4.5e-29 131.7 147 56.5
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 7.7e-29 131.0 152 53.9
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 1.0e-28 130.6 150 55.3
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 1.0e-28 130.6 151 55.0
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 1.3e-28 130.2 151 55.0
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.7e-28 129.8 150 54.7
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 2.2e-28 129.4 150 52.0
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 3.8e-28 128.6 154 56.5
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 5.0e-28 128.3 152 54.6
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 8.5e-28 127.5 145 55.2
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 8.5e-28 127.5 145 55.2
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 8.5e-28 127.5 154 54.5
Dinv20757 Davidia involucrata HOM05D003027 ORTHO05D003455 8.5e-28 127.5 154 54.5
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 8.5e-28 127.5 153 56.2
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-27 127.1 151 53.6
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 1.1e-27 127.1 154 54.5
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 2.5e-27 125.9 150 53.3
Sed0023009 Sechium edule HOM05D003027 ORTHO05D003455 2.5e-27 125.9 151 53.0
Manes.08G062800 Manihot esculenta HOM05D003027 ORTHO05D003455 3.2e-27 125.6 150 56.7
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 7.2e-27 124.4 151 53.6
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 7.2e-27 124.4 151 53.6
PGR042G3138 Punica granatum HOM05D003027 ORTHO05D003455 7.2e-27 124.4 153 53.6
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 1.6e-26 123.2 154 53.9
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 1.6e-26 123.2 151 54.3
TAR623G0586 Trochodendron aralioides HOM05D003027 ORTHO05D003455 1.6e-26 123.2 146 54.8
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 2.1e-26 122.9 144 53.5
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 2.7e-26 122.5 154 53.2
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 3.6e-26 122.1 154 52.6
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 6.1e-26 121.3 149 53.7
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 6.1e-26 121.3 142 56.3
Oeu044242.3 Olea europaea HOM05D003027 ORTHO05D003455 6.1e-26 121.3 153 49.7
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.8e-25 119.8 144 53.5
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 1.8e-25 119.8 145 54.5
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 4.0e-25 118.6 154 51.9
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 6.8e-25 117.9 144 53.5
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 8.8e-25 117.5 152 52.0
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 1.2e-24 117.1 144 52.8
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 1.5e-24 116.7 153 51.6
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 1.5e-24 116.7 142 54.2
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 1.5e-24 116.7 141 56.0
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.5e-24 116.7 151 51.7
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 1.5e-24 116.7 154 51.9
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 2.6e-24 115.9 154 50.0
Hund24551 Selenicereus undatus HOM05D003027 ORTHO05D003455 2.6e-24 115.9 152 53.3
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 3.4e-24 115.5 152 52.6
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 5.7e-24 114.8 151 53.6
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 9.8e-24 114.0 142 55.6
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 1.7e-23 113.2 162 50.6
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 2.2e-23 112.8 151 51.7
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 2.8e-23 112.5 154 50.6
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 2.8e-23 112.5 151 51.7
MBI19_g04333_MAGBIO Magnolia biondii HOM05D003027 ORTHO05D003455 2.8e-23 112.5 157 51.0
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 2.8e-23 112.5 153 54.2
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 4.8e-23 111.7 153 50.3
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 6.3e-23 111.3 152 51.3
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 8.3e-23 110.9 153 52.3
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 8.3e-23 110.9 152 51.3
Actinidia17700 Actinidia chinensis HOM05D003027 ORTHO05D003455 1.1e-22 110.5 152 51.3
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.4e-22 110.2 152 51.3
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.4e-22 110.2 153 52.3
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 1.8e-22 109.8 140 49.3
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.4e-22 109.4 151 49.0
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 3.1e-22 109.0 149 47.7
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 3.1e-22 109.0 152 51.3
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 4.1e-22 108.6 152 50.0
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 4.1e-22 108.6 148 49.3
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 7.0e-22 107.8 152 52.0
SGA_v2.0_scaffold66G22290 Striga asiatica HOM05D003027 ORTHO05D003455 7.0e-22 107.8 153 50.3
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 9.1e-22 107.5 153 51.0
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.2e-21 107.1 153 51.6
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 1.6e-21 106.7 159 52.2
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 2.7e-21 105.9 131 54.2
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 2.7e-21 105.9 152 48.0
Lalb_Chr22g0357801 Lupinus albus HOM05D003027 ORTHO05D003455 4.5e-21 105.1 150 52.0
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 5.9e-21 104.8 149 47.7
Manes.09G000300 Manihot esculenta HOM05D003027 ORTHO05D003455 5.9e-21 104.8 150 50.0
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 1.3e-20 103.6 154 46.8
Lj2A408G49 Lonicera japonica HOM05D003027 ORTHO05D003455 2.3e-20 102.8 154 48.7
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 3.8e-20 102.1 150 50.0
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 6.6e-20 101.3 150 49.3
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 8.6e-20 100.9 140 47.1
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.5e-19 100.1 151 47.7
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 2.5e-19 99.4 153 46.4
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 3.3e-19 99.0 151 48.3
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 5.5e-19 98.2 152 46.7
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 1.2e-18 97.1 134 53.7
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.1e-18 96.3 139 51.1
Os07g0644100 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 2.8e-18 95.9 145 46.9
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 3.6e-18 95.5 152 46.7
BolC9t55746H Brassica oleracea HOM05D003027 ORTHO05D003455 3.6e-18 95.5 139 47.5
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 4.7e-18 95.1 151 46.4
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 1.0e-17 94.0 151 49.0
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 1.0e-17 94.0 151 49.0
HPP92_002082 Vanilla planifolia HOM05D003027 ORTHO05D003455 1.4e-17 93.6 156 44.9
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 1.8e-17 93.2 132 50.0
Zm00001eb110370 Zea mays HOM05D003027 ORTHO05D003455 6.8e-17 91.3 145 44.8
CDE08G1650 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 8.9e-17 90.9 146 45.9
Zm00001eb288060 Zea mays HOM05D003027 ORTHO05D003455 8.9e-17 90.9 147 42.9
Oeu022988.1 Olea europaea HOM05D003027 ORTHO05D003455 1.5e-16 90.1 132 46.2
AUR62030278 Chenopodium quinoa HOM05D003027 ORTHO05D003455 2.0e-16 89.7 134 50.0
Nitab4.5_0000123g0440 Nicotiana tabacum HOM05D003027 ORTHO05D003455 2.6e-16 89.4 152 43.4
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 3.4e-16 89.0 151 45.7
Sopen04g025410 Solanum pennellii HOM05D003027 ORTHO05D003455 3.4e-16 89.0 140 46.4
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 5.7e-16 88.2 139 48.2
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 9.8e-16 87.4 154 46.1
PGSC0003DMG400039820 Solanum tuberosum HOM05D003027 ORTHO05D003455 1.3e-15 87.0 137 46.0
Os05g0411300 Oryza sativa ssp. japonica HOM05D003027 ORTHO05D003455 3.7e-15 85.5 157 42.7
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 6.3e-15 84.7 80 62.5
CDE08G0069 Ceratophyllum demersum HOM05D003027 ORTHO05D003455 1.1e-14 84.0 156 42.9
Sopen04g025360 Solanum pennellii HOM05D003027 ORTHO05D003455 1.1e-14 84.0 141 45.4
Solyc04g056490.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 1.2e-13 80.5 140 44.3
A04p03460 Brassica napus HOM05D003027 ORTHO05D003455 2.0e-13 79.7 151 43.0
BraA04t16091Z Brassica rapa HOM05D003027 ORTHO05D003455 2.0e-13 79.7 151 43.0
Solyc04g056460.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 2.0e-13 79.7 141 42.6
Glyma.07G017800 Glycine max HOM05D003027 ORTHO05D003455 2.7e-13 79.3 108 49.1
Mapoly0130s0030 Marchantia polymorpha HOM05D003027 ORTHO05D003455 3.5e-13 79.0 162 35.8
BcaC02g11096 Brassica carinata HOM05D003027 ORTHO05D003455 7.8e-13 77.8 154 40.9
C09p28840 Brassica napus HOM05D003027 ORTHO05D003455 7.8e-13 77.8 110 47.3
BcaC07g37745 Brassica carinata HOM05D003027 ORTHO05D003455 2.9e-12 75.9 61 70.5
ATR0307G054 Amborella trichopoda HOM05D003027 ORTHO05D003455 6.6e-12 74.7 139 42.4
BraA09t37858Z Brassica rapa HOM05D003027 ORTHO05D003455 8.6e-12 74.3 94 51.1
HPP92_002076 Vanilla planifolia HOM05D003027 ORTHO05D003455 4.3e-11 72.0 140 40.7
Solyc03g013450.3 Solanum lycopersicum HOM05D003027 ORTHO05D003455 9.5e-11 70.9 134 40.3
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 8.0e-10 67.8 151 38.4
SEGI_25646 Sequoiadendron giganteum HOM05D003027 ORTHO05D003455 4.4e-08 62.0 150 38.0
Pp3c3_16820 Physcomitrium patens HOM05D003027 ORTHO05D003455 7.5e-08 61.2 170 34.1
PGSC0003DMG400034669 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.7e-07 58.9 139 35.3
Solyc04g051060.2 Solanum lycopersicum HOM05D003027 ORTHO05D003455 4.9e-07 58.5 99 44.4
Pp3c13_15030 Physcomitrium patens HOM05D003027 ORTHO05D003455 8.3e-07 57.8 172 32.0
Sopen04g022340 Solanum pennellii HOM05D003027 ORTHO05D003455 3.2e-06 55.8 67 52.2
PGSC0003DMG400044241 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.2e-06 55.8 54 59.3


User provided reference genes

Program Settings