Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20894 Brassica carinata HOM05D000297 ORTHO05D095555 3.7e-31 137.9 87 100.0
BcaB04g20892 Brassica carinata HOM05D000297 ORTHO05D000193 1.3e-07 59.7 33 84.8
BcaC09g48572 Brassica carinata HOM05D000297 ORTHO05D000193 2.2e-07 58.9 33 84.8
A01p38170 Brassica napus HOM05D000297 ORTHO05D000193 2.2e-07 58.9 33 84.8
C01p48430 Brassica napus HOM05D000297 ORTHO05D000193 2.2e-07 58.9 33 84.8
BolC1t04803H Brassica oleracea HOM05D000297 ORTHO05D000193 2.2e-07 58.9 33 84.8
BraA01t03875Z Brassica rapa HOM05D000297 ORTHO05D000193 2.2e-07 58.9 33 84.8
CiPaw.03G282000 Carya illinoinensis HOM05D000297 ORTHO05D000193 2.9e-07 58.5 33 78.8
THA.LOC104808844 Tarenaya hassleriana HOM05D000297 ORTHO05D000193 2.9e-07 58.5 33 81.8
THA.LOC104826629 Tarenaya hassleriana HOM05D000297 ORTHO05D000193 2.9e-07 58.5 33 81.8
Aa31sc324G20 Aethionema arabicum HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 78.8
BcaB04g18867 Brassica carinata HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 81.8
BcaC01g03849 Brassica carinata HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 81.8
A03p39590 Brassica napus HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 81.8
C03p47960 Brassica napus HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 81.8
BolC3t17076H Brassica oleracea HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 81.8
BraA03t13107Z Brassica rapa HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 81.8
Thhalv10021580m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 3.8e-07 58.2 33 78.8
AL7G41600 Arabidopsis lyrata HOM05D000297 ORTHO05D000193 4.9e-07 57.8 33 81.8
AT4G14540 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 4.9e-07 57.8 33 81.8
Sp3g14280 Schrenkiella parvula HOM05D000297 ORTHO05D000193 4.9e-07 57.8 33 78.8
A05p33500 Brassica napus HOM05D000297 ORTHO05D000193 6.4e-07 57.4 33 81.8
BraA05t22172Z Brassica rapa HOM05D000297 ORTHO05D000193 6.4e-07 57.4 33 81.8
Carub.0007s2767 Capsella rubella HOM05D000297 ORTHO05D000193 6.4e-07 57.4 33 78.8
CARHR220750 Cardamine hirsuta HOM05D000297 ORTHO05D000193 6.4e-07 57.4 33 78.8
Potri.014G167800 Populus trichocarpa HOM05D000297 ORTHO05D000193 8.4e-07 57.0 34 76.5
Atru.chr6.3397 Acer truncatum HOM05D000297 ORTHO05D000193 1.1e-06 56.6 33 78.8
CiPaw.04G197100 Carya illinoinensis HOM05D000297 ORTHO05D000193 1.1e-06 56.6 33 75.8
MBI16_g46682_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D001694 1.1e-06 56.6 38 73.7
Manes.13G061801 Manihot esculenta HOM05D000297 ORTHO05D000193 1.1e-06 56.6 33 75.8
BcaB06g25695 Brassica carinata HOM05D000297 ORTHO05D000193 1.4e-06 56.2 33 78.8
BcaC05g28922 Brassica carinata HOM05D000297 ORTHO05D000193 1.4e-06 56.2 33 78.8
C05p50490 Brassica napus HOM05D000297 ORTHO05D000193 1.4e-06 56.2 33 78.8
BolC5t33795H Brassica oleracea HOM05D000297 ORTHO05D000193 1.4e-06 56.2 33 78.8
Duzib211G0459 Durio zibethinus HOM05D000297 ORTHO05D000193 1.4e-06 56.2 31 80.6
Gohir.A11G148900 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.4e-06 56.2 31 80.6
Gohir.D11G155950 Gossypium hirsutum HOM05D000297 ORTHO05D000193 1.4e-06 56.2 31 80.6
Gorai.007G166100 Gossypium raimondii HOM05D000297 ORTHO05D000193 1.4e-06 56.2 31 80.6
Manes.12G066300 Manihot esculenta HOM05D000297 ORTHO05D000193 1.4e-06 56.2 33 75.8
QL04p068467 Quercus lobata HOM05D000297 ORTHO05D000193 1.4e-06 56.2 31 80.6
Sc03g0011240 Simmondsia chinensis HOM05D000297 ORTHO05D000193 1.4e-06 56.2 31 80.6
Sabra14G0127600 Salix brachista HOM05D000297 ORTHO05D000193 1.9e-06 55.8 34 73.5
Thecc.01G196300 Theobroma cacao HOM05D000297 ORTHO05D000193 1.9e-06 55.8 31 80.6
TWI36G1163 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 1.9e-06 55.8 31 80.6
Cpa.g.sc136.31 Carica papaya HOM05D000297 ORTHO05D000193 2.4e-06 55.5 33 75.8
Lj1A796T36 Lonicera japonica HOM05D000297 ORTHO05D000193 3.2e-06 55.1 33 75.8
Lj6g0010798 Lotus japonicus HOM05D000297 ORTHO05D000193 3.2e-06 55.1 30 80.0
MD09G1126900 Malus domestica HOM05D000297 ORTHO05D000193 3.2e-06 55.1 31 77.4
MD17G1117200 Malus domestica HOM05D000297 ORTHO05D000193 3.2e-06 55.1 31 77.4
Nn1g03184 Nelumbo nucifera HOM05D000297 ORTHO05D000193 3.2e-06 55.1 33 72.7
Sed0015461 Sechium edule HOM05D000297 ORTHO05D000193 3.2e-06 55.1 33 72.7
Sc21g0000530 Simmondsia chinensis HOM05D000297 ORTHO05D000193 3.2e-06 55.1 31 80.6
vmacro12081 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 3.2e-06 55.1 30 83.3
CANSAT56G4001 Cannabis sativa HOM05D000297 ORTHO05D000193 4.2e-06 54.7 30 76.7
Cpa.g.sc12.151 Carica papaya HOM05D000297 ORTHO05D000193 4.2e-06 54.7 30 76.7
COL.COLO4_19615 Corchorus olitorius HOM05D000297 ORTHO05D000193 4.2e-06 54.7 31 77.4
Duzib138G1115 Durio zibethinus HOM05D000297 ORTHO05D000193 4.2e-06 54.7 31 77.4
Nn1g07505 Nelumbo nucifera HOM05D000297 ORTHO05D000193 4.2e-06 54.7 33 72.7
RcHm_v2.0_Chr2g0155961 Rosa chinensis HOM05D000297 ORTHO05D000193 4.2e-06 54.7 31 77.4
TAR626G1322 Trochodendron aralioides HOM05D000297 ORTHO05D000193 4.2e-06 54.7 31 77.4
AagrBONN_evm.TU.Sc2ySwM_344.5023 Anthoceros agrestis HOM05D000297 ORTHO05D000193 5.4e-06 54.3 29 86.2
Cfa014224 Carpinus fangiana HOM05D000588 ORTHO05D000637 5.4e-06 54.3 34 73.5
CiPaw.11G203400 Carya illinoinensis HOM05D000297 ORTHO05D000193 5.4e-06 54.3 26 92.3
ClCG02G009200 Citrullus lanatus HOM05D000297 ORTHO05D000193 5.4e-06 54.3 33 72.7
Haze_12627 Corylus avellana HOM05D000297 ORTHO05D000193 5.4e-06 54.3 34 73.5
MELO3C025951.2 Cucumis melo HOM05D000297 ORTHO05D000193 5.4e-06 54.3 33 72.7
CsaV3_6G009670 Cucumis sativus L. HOM05D000297 ORTHO05D000193 5.4e-06 54.3 33 72.7
Nitab4.5_0006039g0010 Nicotiana tabacum HOM05D000297 ORTHO05D000193 5.4e-06 54.3 33 72.7
Nitab4.5_0013475g0010 Nicotiana tabacum HOM05D000297 ORTHO05D000193 5.4e-06 54.3 33 72.7
AL8G10310 Arabidopsis lyrata HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
AT5G47640 Arabidopsis thaliana HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BcaB07g30767 Brassica carinata HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BcaC03g16980 Brassica carinata HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BcaC04g21611 Brassica carinata HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
A02p31470 Brassica napus HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
A09p23150 Brassica napus HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
C02p48800 Brassica napus HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
C09p29880 Brassica napus HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BolC2t10976H Brassica oleracea HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BolC9t55851H Brassica oleracea HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BraA02t08150Z Brassica rapa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
BraA09t37918Z Brassica rapa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
Carub.0008s0014 Capsella rubella HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
CARHR173670 Cardamine hirsuta HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
Cfa000040 Carpinus fangiana HOM05D000297 ORTHO05D000193 7.1e-06 53.9 36 66.7
CDE10G0596 Ceratophyllum demersum HOM05D000297 ORTHO05D000193 7.1e-06 53.9 34 70.6
Haze_07015 Corylus avellana HOM05D000297 ORTHO05D000193 7.1e-06 53.9 36 66.7
Migut.M00176 Erythranthe guttata HOM05D000297 ORTHO05D000193 7.1e-06 53.9 29 82.8
Migut.O00326 Erythranthe guttata HOM05D000297 ORTHO05D000193 7.1e-06 53.9 29 82.8
Thhalv10001037m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
FvH4_6g40600 Fragaria vesca HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
FAN02G3572 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
FAN05G0577 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
FAN09G3314 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
FAN14G1515 Fragaria x ananassa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
LjContig00081g0026781 Lotus japonicus HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
MBI16_g47136_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 7.1e-06 53.9 29 82.8
Potri.016G006100 Populus trichocarpa HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
Rhsim06G0176700 Rhododendron simsii HOM05D000297 ORTHO05D000193 7.1e-06 53.9 30 80.0
Sabra16G0010900 Salix brachista HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
SalBow8G0347 Salvia bowleyana HOM05D000297 ORTHO05D000193 7.1e-06 53.9 43 62.8
Sp2g12350 Schrenkiella parvula HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
TWI18G0153 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 7.1e-06 53.9 26 88.5
TWI38G0447 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 7.1e-06 53.9 33 72.7
TWI39G0568 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 7.1e-06 53.9 33 72.7
unitig_62.g23325 Utricularia gibba HOM05D000297 ORTHO05D000193 7.1e-06 53.9 31 80.6
Dinv21299 Davidia involucrata HOM05D000297 ORTHO05D000193 9.3e-06 53.5 33 72.7
Eucgr.F02051 Eucalyptus grandis HOM05D000297 ORTHO05D000193 9.3e-06 53.5 30 76.7
Eucgr.L00153 Eucalyptus grandis HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 88.5
Thhalv10010755m.g Eutrema salsugineum HOM05D000297 ORTHO05D000193 9.3e-06 53.5 34 67.6
Lsat_1_v5_gn_7_96781 Lactuca sativa HOM05D000297 ORTHO05D000193 9.3e-06 53.5 33 72.7
Lalb_Chr13g0296661 Lupinus albus HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 84.6
Mapoly0216s0010 Marchantia polymorpha HOM05D000297 ORTHO05D000193 9.3e-06 53.5 33 72.7
Medtr2g026710 Medicago truncatula HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 88.5
Phvul.002G273800 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 84.6
Phvul.008G278900 Phaseolus vulgaris HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 84.6
Sed0006837 Sechium edule HOM05D000297 ORTHO05D000193 9.3e-06 53.5 33 72.7
TPR.G10573 Trifolium pratense HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 88.5
VMungo0251G1537 Vigna mungo HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 84.6
VMungo0647G2122 Vigna mungo HOM05D000297 ORTHO05D000193 9.3e-06 53.5 26 84.6


User provided reference genes

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