Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20857 Brassica carinata HOM05D006827 ORTHO05D008725 1.4e-133 479.9 300 100.0
Sp3g15370 Schrenkiella parvula HOM05D006827 ORTHO05D008725 7.9e-121 437.6 303 83.8
BraA01t03774Z Brassica rapa HOM05D006827 ORTHO05D008725 3.0e-120 435.6 234 93.6
BcaC09g48674 Brassica carinata HOM05D006827 ORTHO05D008725 1.1e-119 433.7 300 85.3
BcaC09g48673 Brassica carinata HOM05D006827 ORTHO05D008725 5.6e-119 431.4 306 83.7
C01p47070 Brassica napus HOM05D006827 ORTHO05D008725 5.6e-119 431.4 306 83.7
BolC1t04673H Brassica oleracea HOM05D006827 ORTHO05D008725 2.8e-118 429.1 306 83.3
A01p37130 Brassica napus HOM05D006827 ORTHO05D008725 4.0e-117 425.2 234 93.6
Thhalv10021204m.g Eutrema salsugineum HOM05D006827 ORTHO05D008725 8.4e-115 417.5 303 82.8
CARHR092440 Cardamine hirsuta HOM05D006827 ORTHO05D008725 2.5e-114 416.0 308 77.6
Carub.0003s1692 Capsella rubella HOM05D006827 ORTHO05D008725 7.1e-114 414.5 237 92.0
AL3G30170 Arabidopsis lyrata HOM05D006827 ORTHO05D008725 1.6e-113 413.3 230 93.0
AT3G17170 Arabidopsis thaliana HOM05D006827 ORTHO05D008725 7.4e-111 404.4 230 90.9
Aa31LG8G4170 Aethionema arabicum HOM05D006827 ORTHO05D008725 2.6e-108 396.0 237 85.7
THA.LOC104820318 Tarenaya hassleriana HOM05D006827 ORTHO05D008725 4.2e-98 362.1 237 76.4
Cc03_g00540 Coffea canephora HOM05D006827 ORTHO05D008725 5.3e-77 292.0 247 61.9
DCAR_023373 Daucus carota HOM05D006827 ORTHO05D008725 5.3e-77 292.0 251 64.1
Gohir.A10G174600 Gossypium hirsutum HOM05D006827 ORTHO05D008725 5.9e-76 288.5 241 63.5
Gorai.011G202600 Gossypium raimondii HOM05D006827 ORTHO05D008725 1.0e-75 287.7 241 63.1
Thecc.04G305900 Theobroma cacao HOM05D006827 ORTHO05D008725 1.7e-75 287.0 240 64.6
Manes.03G207700 Manihot esculenta HOM05D006827 ORTHO05D008725 2.9e-75 286.2 189 73.0
COL.COLO4_34569 Corchorus olitorius HOM05D001281 ORTHO05D001139 1.5e-74 283.9 237 65.8
Actinidia31567 Actinidia chinensis HOM05D006827 ORTHO05D008725 1.9e-74 283.5 241 61.0
TWI53G1816 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 2.5e-74 283.1 242 60.3
Ah.13g071520 Amaranthus hybridus HOM05D006827 ORTHO05D008725 3.2e-74 282.7 251 59.4
Gohir.D10G181100 Gossypium hirsutum HOM05D006827 ORTHO05D008725 5.5e-74 282.0 241 62.2
TAR365G1248 Trochodendron aralioides HOM05D006827 ORTHO05D008725 5.5e-74 282.0 191 72.8
Nitab4.5_0002421g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 9.4e-74 281.2 177 77.4
GSVIVG01034952001 Vitis vinifera HOM05D006827 ORTHO05D008725 1.2e-73 280.8 189 72.5
Duzib212G0426 Durio zibethinus HOM05D006827 ORTHO05D008725 1.6e-73 280.4 238 64.3
Potri.008G101900 Populus trichocarpa HOM05D006827 ORTHO05D008725 1.6e-73 280.4 251 61.0
CANSAT78G0077 Cannabis sativa HOM05D006827 ORTHO05D008725 2.1e-73 280.0 201 68.2
CiPaw.01G134600 Carya illinoinensis HOM05D006827 ORTHO05D008725 2.1e-73 280.0 189 73.0
Nitab4.5_0004047g0010 Nicotiana tabacum HOM05D006827 ORTHO05D008725 3.6e-73 279.3 177 76.3
Oeu014225.1 Olea europaea HOM05D006827 ORTHO05D008725 3.6e-73 279.3 190 70.5
Dinv15137 Davidia involucrata HOM05D006827 ORTHO05D008725 4.7e-73 278.9 192 71.4
Sopen01g023660 Solanum pennellii HOM05D006827 ORTHO05D008725 4.7e-73 278.9 190 71.6
Solyc01g058190.4 Solanum lycopersicum HOM05D006827 ORTHO05D008725 1.0e-72 277.7 190 71.1
EL10Ac3g05552 Beta vulgaris HOM05D006827 ORTHO05D008725 1.8e-72 276.9 254 57.5
Hma1.2p1_0516F.1_g170510 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 1.8e-72 276.9 199 71.9
PGSC0003DMG400015968 Solanum tuberosum HOM05D006827 ORTHO05D008725 3.0e-72 276.2 197 68.0
Prupe.1G113000 Prunus persica HOM05D006827 ORTHO05D008725 4.0e-72 275.8 179 74.9
CAN.G281.10 Capsicum annuum HOM05D006827 ORTHO05D008725 8.8e-72 274.6 245 62.4
MSTRG.3845 Avicennia marina HOM05D006827 ORTHO05D008725 1.2e-71 274.2 215 65.1
MBI18_g27379_MAGBIO Magnolia biondii HOM05D006827 ORTHO05D008725 1.5e-71 273.9 197 67.0
MD13G1149000 Malus domestica HOM05D006827 ORTHO05D008725 1.5e-71 273.9 177 72.9
Nn3g21791 Nelumbo nucifera HOM05D006827 ORTHO05D008725 3.4e-71 272.7 202 67.8
Migut.N00027 Erythranthe guttata HOM05D006827 ORTHO05D008725 9.8e-71 271.2 198 65.7
unitig_88.g27700 Utricularia gibba HOM05D006827 ORTHO05D008725 1.3e-70 270.8 199 66.3
TPR.G33906 Trifolium pratense HOM05D006827 ORTHO05D008725 1.7e-70 270.4 200 66.0
ClCG06G004410 Citrullus lanatus HOM05D006827 ORTHO05D008725 2.2e-70 270.0 225 62.7
Sed0009970 Sechium edule HOM05D006827 ORTHO05D008725 2.8e-70 269.6 181 71.8
PSO210G0119 Papaver somniferum HOM05D006827 ORTHO05D008725 3.7e-70 269.2 180 70.6
arahy.Tifrunner.gnm1.ann1.7T6EZL Arachis hypogaea HOM05D006827 ORTHO05D008725 4.8e-70 268.9 198 67.7
Lsat_1_v5_gn_6_116121 Lactuca sativa HOM05D006827 ORTHO05D008725 4.8e-70 268.9 180 73.3
AUR62016245 Chenopodium quinoa HOM05D002153 ORTHO05D002137 6.3e-70 268.5 185 68.1
FvH4_4g20660 Fragaria vesca HOM05D006827 ORTHO05D008725 6.3e-70 268.5 181 70.2
FAN12G3056 Fragaria x ananassa HOM05D006827 ORTHO05D008725 6.3e-70 268.5 181 70.2
PSO761G0463 Papaver somniferum HOM05D006827 ORTHO05D008725 6.3e-70 268.5 180 70.6
arahy.Tifrunner.gnm1.ann1.W8AIPN Arachis hypogaea HOM05D006827 ORTHO05D008725 8.3e-70 268.1 198 67.2
ECA246G4663 Erigeron canadensis HOM05D002153 ORTHO05D002137 1.1e-69 267.7 179 72.6
MELO3C021255.2 Cucumis melo HOM05D006827 ORTHO05D008725 1.8e-69 266.9 250 59.6
HanXRQChr05g0148611 Helianthus annuus HOM05D006827 ORTHO05D008725 1.8e-69 266.9 176 75.0
QL06p013028 Quercus lobata HOM05D006827 ORTHO05D008725 2.4e-69 266.5 195 69.2
RcHm_v2.0_Chr4g0426061 Rosa chinensis HOM05D006827 ORTHO05D008725 2.4e-69 266.5 179 70.9
TWI09G0591 Tripterygium wilfordii HOM05D006827 ORTHO05D008725 4.1e-69 265.8 197 66.0
Cfa015277 Carpinus fangiana HOM05D006827 ORTHO05D008725 5.4e-69 265.4 201 66.7
FAN07G0118 Fragaria x ananassa HOM05D006827 ORTHO05D008725 9.1e-69 264.6 187 68.4
Ca_00959_v3 Cicer arietinum L. HOM05D006827 ORTHO05D008725 2.7e-68 263.1 181 69.6
Medtr2g033490 Medicago truncatula HOM05D006827 ORTHO05D008725 5.9e-68 261.9 202 64.4
PGR031G1277 Punica granatum HOM05D006827 ORTHO05D008725 7.7e-68 261.5 177 70.6
Glyma.15G137900 Glycine max HOM05D006827 ORTHO05D008725 1.0e-67 261.2 217 59.4
Lj6g0001147 Lotus japonicus HOM05D001281 ORTHO05D001139 1.7e-67 260.4 181 68.0
Glyma.09G032900 Glycine max HOM05D001281 ORTHO05D008725 2.9e-67 259.6 209 60.8
Phvul.006G120200 Phaseolus vulgaris HOM05D006827 ORTHO05D008725 3.8e-67 259.2 211 61.1
VMungo0540G1290 Vigna mungo HOM05D006827 ORTHO05D008725 8.5e-67 258.1 211 59.2
SGA_v2.0_scaffold227G43227 Striga asiatica HOM05D006827 ORTHO05D008725 1.5e-66 257.3 193 66.8
Aqoxy2G02656 Aquilegia oxysepala HOM05D006827 ORTHO05D008725 3.2e-66 256.1 180 70.6
Sc25g0003190 Simmondsia chinensis HOM05D006827 ORTHO05D008725 5.5e-66 255.4 180 67.2
Lj3A834T69 Lonicera japonica HOM05D006827 ORTHO05D008725 9.4e-66 254.6 174 69.0
arahy.Tifrunner.gnm1.ann1.GV6LK0 Arachis hypogaea HOM05D006827 ORTHO05D008725 2.7e-65 253.1 198 65.7
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 4.7e-65 252.3 185 68.1
Ciclev10005460m.g Citrus clementina HOM05D006827 ORTHO05D008725 8.0e-65 251.5 177 69.5
ATR1120G107 Amborella trichopoda HOM05D006827 ORTHO05D008725 3.0e-64 249.6 209 59.3
Eucgr.B03980 Eucalyptus grandis HOM05D006827 ORTHO05D008725 4.0e-64 249.2 195 63.6
Hund11994 Selenicereus undatus HOM05D006827 ORTHO05D008725 1.2e-63 247.7 200 64.5
Haze_01351 Corylus avellana HOM05D002153 ORTHO05D002137 1.5e-63 247.3 248 55.6
QL03p023650 Quercus lobata HOM05D006827 ORTHO05D008725 1.5e-63 247.3 238 56.3
Os12g0563200 Oryza sativa ssp. japonica HOM05D006827 ORTHO05D008725 2.6e-63 246.5 180 64.4
HPP92_027958 Vanilla planifolia HOM05D006827 ORTHO05D008725 1.3e-62 244.2 232 56.5
Zm00001eb136900 Zea mays HOM05D006827 ORTHO05D008725 3.7e-62 242.7 178 63.5
Rhsim04G0242100 Rhododendron simsii HOM05D006827 ORTHO05D008725 4.9e-62 242.3 166 72.3
Psat1g161800 Pisum sativum HOM05D006827 ORTHO05D008725 1.4e-61 240.7 179 65.9
CAN.G582.1 Capsicum annuum HOM05D006827 ORTHO05D008725 5.4e-61 238.8 177 68.4
Lalb_Chr18g0058551 Lupinus albus HOM05D006827 ORTHO05D008725 2.7e-60 236.5 180 63.3
Peaxi162Scf00228g00735 Petunia axillaris HOM05D006827 ORTHO05D008725 1.6e-57 227.3 149 73.8
CsaV3_UNG230110 Cucumis sativus L. HOM05D006827 ORTHO05D008725 5.7e-55 218.8 166 67.5
vmacro07963 Vaccinium macrocarpon HOM05D006827 ORTHO05D008725 4.9e-54 215.7 153 69.9
CsaV3_6G028440 Cucumis sativus L. HOM05D006827 ORTHO05D008725 5.6e-50 202.2 253 49.0
Atru.chr4.3069 Acer truncatum HOM05D006827 ORTHO05D008725 2.4e-45 186.8 118 76.3
BcaC05g28821 Brassica carinata HOM05D006827 ORTHO05D023991 3.2e-45 186.4 168 67.9
Hma1.2p1_0013F.1_g008250 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 3.2e-45 186.4 115 76.5
MD16G1149200 Malus domestica HOM05D006827 ORTHO05D008725 6.0e-44 182.2 122 71.3
arahy.Tifrunner.gnm1.ann1.25F6GK Arachis hypogaea HOM05D006827 ORTHO05D008725 2.4e-37 160.2 157 56.7
C05p49280 Brassica napus HOM05D006827 ORTHO05D008725 7.8e-36 155.2 145 65.5
SEGI_22692 Sequoiadendron giganteum HOM05D006827 ORTHO05D008725 3.3e-34 149.8 110 63.6
Cpa.g.sc9.7 Carica papaya HOM05D001281 ORTHO05D008725 1.6e-33 147.5 171 57.3
Pp3c14_11410 Physcomitrium patens HOM05D006827 ORTHO05D008725 6.8e-32 142.1 155 45.8
Pp3c14_11414 Physcomitrium patens HOM05D006827 ORTHO05D008725 6.8e-32 142.1 155 45.8
Mapoly0005s0049 Marchantia polymorpha HOM05D006827 ORTHO05D008725 1.2e-31 141.4 157 47.1
AUR62032776 Chenopodium quinoa HOM05D006827 ORTHO05D008725 5.6e-26 122.5 95 61.1
CBR_g38487 Chara braunii HOM05D006827 ORTHO05D008725 1.8e-24 117.5 147 41.5
SMO351G0308 Selaginella moellendorffii HOM05D006827 ORTHO05D008725 3.1e-24 116.7 98 50.0
A05p32600 Brassica napus HOM05D006827 ORTHO05D008725 3.4e-23 113.2 80 76.2
BraA05t22084Z Brassica rapa HOM05D006827 ORTHO05D008725 3.4e-23 113.2 80 76.2
Psat7g189800 Pisum sativum HOM05D006827 ORTHO05D008725 5.6e-18 95.9 73 60.3
PRCOL_00004690 Prasinoderma coloniale HOM05D006827 ORTHO05D008725 1.4e-13 81.3 101 42.6
Hma1.2p1_0013F.1_g008240 Hydrangea macrophylla HOM05D006827 ORTHO05D008725 7.1e-13 79.0 63 61.9
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.1e-10 71.6 123 35.8
BcaB06g25810 Brassica carinata HOM05D006827 ORTHO05D023991 5.6e-10 69.3 39 84.6
Psat4g040600 Pisum sativum HOM05D006827 ORTHO05D008725 1.8e-08 64.3 135 31.9
TAR633G1668 Trochodendron aralioides HOM05D006827 ORTHO05D023991 1.5e-07 61.2 35 77.1
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 2.6e-07 60.5 87 35.6


User provided reference genes

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