Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20613 Brassica carinata HOM05D000386 ORTHO05D094838 6.0e-39 163.7 82 100.0
AL3G35030 Arabidopsis lyrata HOM05D000386 ORTHO05D000406 3.5e-15 84.7 99 53.5
AT3G21090 Arabidopsis thaliana HOM05D000386 ORTHO05D000406 3.5e-15 84.7 99 53.5
CARHR096920 Cardamine hirsuta HOM05D000386 ORTHO05D000406 3.5e-15 84.7 99 53.5
BcaB06g26175 Brassica carinata HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
BcaC05g28219 Brassica carinata HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
A05p27630 Brassica napus HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
C05p43010 Brassica napus HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
BolC5t33032H Brassica oleracea HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
BraA05t21657Z Brassica rapa HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
Carub.0003s2099 Capsella rubella HOM05D000386 ORTHO05D000406 7.9e-15 83.6 99 52.5
Thhalv10020189m.g Eutrema salsugineum HOM05D000386 ORTHO05D000406 1.3e-14 82.8 99 51.5
Sp3g19040 Schrenkiella parvula HOM05D000386 ORTHO05D000406 1.3e-14 82.8 99 51.5
Aa31LG8G7800 Aethionema arabicum HOM05D000386 ORTHO05D000406 3.0e-14 81.6 99 50.5
BcaC08g43918 Brassica carinata HOM05D000386 ORTHO05D000406 1.1e-11 73.2 99 43.4
A05p19530 Brassica napus HOM05D000386 ORTHO05D000406 1.1e-11 73.2 99 43.4
C06p13120 Brassica napus HOM05D000386 ORTHO05D000406 1.1e-11 73.2 99 43.4
BolC6t36468H Brassica oleracea HOM05D000386 ORTHO05D000406 1.1e-11 73.2 99 43.4
BraA05t20857Z Brassica rapa HOM05D000386 ORTHO05D000406 1.1e-11 73.2 99 43.4
Thhalv10011278m.g Eutrema salsugineum HOM05D000386 ORTHO05D000406 1.1e-11 73.2 102 41.2
BcaB02g11253 Brassica carinata HOM05D000386 ORTHO05D000406 1.4e-11 72.8 99 43.4
AT1G51500 Arabidopsis thaliana HOM05D000386 ORTHO05D000406 2.4e-11 72.0 99 43.4
AL1G59390 Arabidopsis lyrata HOM05D000386 ORTHO05D000406 3.1e-11 71.6 99 43.4
Sp1g38140 Schrenkiella parvula HOM05D000386 ORTHO05D000406 1.2e-10 69.7 99 41.4
Carub.0001s4035 Capsella rubella HOM05D000386 ORTHO05D000406 1.5e-10 69.3 102 40.2
AUR62000147 Chenopodium quinoa HOM05D000386 ORTHO05D000406 1.9e-08 62.4 64 51.6
Manes.14G004100 Manihot esculenta HOM05D000386 ORTHO05D000406 5.5e-08 60.8 99 38.4
PGSC0003DMG400029989 Solanum tuberosum HOM05D000386 ORTHO05D000406 1.2e-07 59.7 100 37.0
Ciclev10014463m.g Citrus clementina HOM05D000386 ORTHO05D000406 1.6e-07 59.3 100 36.0
Gohir.A05G069900 Gossypium hirsutum HOM05D000386 ORTHO05D000406 1.6e-07 59.3 99 34.3
Gohir.D05G072800 Gossypium hirsutum HOM05D000386 ORTHO05D000406 1.6e-07 59.3 99 34.3
Gorai.009G073800 Gossypium raimondii HOM05D000386 ORTHO05D000406 1.6e-07 59.3 99 34.3
Phvul.011G023100 Phaseolus vulgaris HOM05D000386 ORTHO05D000406 2.1e-07 58.9 97 38.1
Potri.001G255800 Populus trichocarpa HOM05D000386 ORTHO05D000406 2.7e-07 58.5 99 38.4
Peaxi162Scf00004g03212 Petunia axillaris HOM05D000386 ORTHO05D000406 3.5e-07 58.2 100 37.0
arahy.Tifrunner.gnm1.ann1.01D1MQ Arachis hypogaea HOM05D000386 ORTHO05D000406 4.6e-07 57.8 97 37.1
arahy.Tifrunner.gnm1.ann1.0PE7XW Arachis hypogaea HOM05D000386 ORTHO05D000406 4.6e-07 57.8 97 37.1
Prupe.4G254600 Prunus persica HOM05D000386 ORTHO05D000406 4.6e-07 57.8 99 34.3
Cc01_g04940 Coffea canephora HOM05D000386 ORTHO05D000406 6.1e-07 57.4 100 35.0
COL.COLO4_28769 Corchorus olitorius HOM05D000386 ORTHO05D000406 6.1e-07 57.4 99 33.3
PGR119G2189 Punica granatum HOM05D000386 ORTHO05D000406 6.1e-07 57.4 97 36.1
THA.LOC104816873 Tarenaya hassleriana HOM05D000386 ORTHO05D000406 6.1e-07 57.4 99 39.4
TAR234G0002 Trochodendron aralioides HOM05D000386 ORTHO05D016108 6.1e-07 57.4 120 32.5
Sabra09G0037300 Salix brachista HOM05D000386 ORTHO05D000406 7.9e-07 57.0 99 35.4
Sabra16G0156400 Salix brachista HOM05D000386 ORTHO05D000406 7.9e-07 57.0 99 36.4
CANSAT54G2230 Cannabis sativa HOM05D000386 ORTHO05D000406 1.3e-06 56.2 96 34.4
Sed0003621 Sechium edule HOM05D000386 ORTHO05D000406 1.3e-06 56.2 99 35.4
Medtr4g076940 Medicago truncatula HOM05D000386 ORTHO05D000406 1.8e-06 55.8 99 34.3
Solyc11g065350.2 Solanum lycopersicum HOM05D000386 ORTHO05D000406 1.8e-06 55.8 100 35.0
Sopen11g025110 Solanum pennellii HOM05D000386 ORTHO05D000406 1.8e-06 55.8 100 35.0
VMungo1127G0277 Vigna mungo HOM05D000386 ORTHO05D000406 1.8e-06 55.8 97 36.1
Atru.chr3.2670 Acer truncatum HOM05D000386 ORTHO05D000406 2.3e-06 55.5 98 34.7
Thecc.09G238000 Theobroma cacao HOM05D000386 ORTHO05D000406 2.3e-06 55.5 99 34.3
TAR636G0498 Trochodendron aralioides HOM05D000386 ORTHO05D000406 2.3e-06 55.5 99 34.3
Ca_18975_v3 Cicer arietinum L. HOM05D000386 ORTHO05D000406 3.0e-06 55.1 97 34.0
Ca_30869_v3 Cicer arietinum L. HOM05D000386 ORTHO05D000406 3.0e-06 55.1 97 34.0
TPR.G13747 Trifolium pratense HOM05D000386 ORTHO05D000406 3.0e-06 55.1 97 34.0
MELO3C014580.2 Cucumis melo HOM05D000386 ORTHO05D000406 3.9e-06 54.7 99 34.3
Glyma.11G093900 Glycine max HOM05D000386 ORTHO05D000406 3.9e-06 54.7 97 35.1
Glyma.12G020400 Glycine max HOM05D000386 ORTHO05D000406 3.9e-06 54.7 97 35.1
Lj3g0025257 Lotus japonicus HOM05D000386 ORTHO05D000406 3.9e-06 54.7 97 34.0
MD03G1172200 Malus domestica HOM05D000386 ORTHO05D000406 3.9e-06 54.7 99 32.3
MD11G1189900 Malus domestica HOM05D000386 ORTHO05D000406 3.9e-06 54.7 99 33.3
Potri.009G051200 Populus trichocarpa HOM05D000386 ORTHO05D000406 3.9e-06 54.7 99 35.4
CiPaw.14G117100 Carya illinoinensis HOM05D000386 ORTHO05D000406 5.1e-06 54.3 99 33.3
ClCG02G023080 Citrullus lanatus HOM05D000386 ORTHO05D000406 5.1e-06 54.3 99 34.3
TWI34G0387 Tripterygium wilfordii HOM05D000386 ORTHO05D000406 5.1e-06 54.3 102 32.4
Cpa.g.sc84.30 Carica papaya HOM05D000386 ORTHO05D000406 6.7e-06 53.9 98 34.7
Lalb_Chr01g0001061 Lupinus albus HOM05D000386 ORTHO05D000406 6.7e-06 53.9 97 34.0
Lalb_Chr03g0024501 Lupinus albus HOM05D000386 ORTHO05D000406 6.7e-06 53.9 97 34.0
Nitab4.5_0002451g0040 Nicotiana tabacum HOM05D000386 ORTHO05D000406 6.7e-06 53.9 43 58.1
Nitab4.5_0006617g0030 Nicotiana tabacum HOM05D000386 ORTHO05D000406 6.7e-06 53.9 43 58.1
CAN.G717.6 Capsicum annuum HOM05D000386 ORTHO05D000406 8.7e-06 53.5 100 34.0
DCAR_002084 Daucus carota HOM05D000386 ORTHO05D000406 8.7e-06 53.5 98 35.7
Oeu041733.1 Olea europaea HOM05D000386 ORTHO05D016108 8.7e-06 53.5 99 36.4
QL01p004176 Quercus lobata HOM05D000386 ORTHO05D000406 8.7e-06 53.5 97 33.0


User provided reference genes

Program Settings