Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20476 Brassica carinata HOM05D000989 ORTHO05D001287 3.0e-48 194.9 102 100.0
BcaB04g20473 Brassica carinata HOM05D000989 ORTHO05D001287 2.0e-28 129.0 67 98.5
A01p32010 Brassica napus HOM05D000989 ORTHO05D001287 4.5e-28 127.9 67 97.0
BraA01t03326Z Brassica rapa HOM05D000989 ORTHO05D001287 4.5e-28 127.9 67 97.0
BcaC09g49244 Brassica carinata HOM05D000989 ORTHO05D001287 5.0e-27 124.4 67 94.0
C01p41010 Brassica napus HOM05D000989 ORTHO05D001287 1.2e-25 119.8 67 92.5
Sp3g20760 Schrenkiella parvula HOM05D000989 ORTHO05D001287 2.3e-24 115.5 67 88.1
BcaB06g26432 Brassica carinata HOM05D000989 ORTHO05D001287 2.2e-22 109.0 67 88.1
Thhalv10020751m.g Eutrema salsugineum HOM05D000989 ORTHO05D001287 6.3e-22 107.5 67 85.1
Carub.0003s2325 Capsella rubella HOM05D000989 ORTHO05D001287 8.3e-22 107.1 67 83.6
AT3G23080 Arabidopsis thaliana HOM05D000989 ORTHO05D001287 5.4e-21 104.4 67 80.6
AL3G37520 Arabidopsis lyrata HOM05D000989 ORTHO05D001287 1.2e-20 103.2 67 80.6
CARHR098990 Cardamine hirsuta HOM05D000989 ORTHO05D001287 2.0e-20 102.4 67 82.1
BcaC05g27976 Brassica carinata HOM05D000989 ORTHO05D001287 1.3e-19 99.8 67 79.1
C05p39820 Brassica napus HOM05D000989 ORTHO05D001287 1.3e-19 99.8 67 79.1
BolC5t32727H Brassica oleracea HOM05D000989 ORTHO05D001287 1.3e-19 99.8 67 79.1
BraA05t21442Z Brassica rapa HOM05D000989 ORTHO05D001287 8.6e-19 97.1 67 77.6
Aa31LG8G9560 Aethionema arabicum HOM05D000989 ORTHO05D001287 2.6e-15 85.5 65 69.2
Carub.0007s2772 Capsella rubella HOM05D000989 ORTHO05D001287 3.4e-15 85.1 67 62.7
BcaC07g37823 Brassica carinata HOM05D000989 ORTHO05D001287 5.8e-15 84.3 67 59.7
A08p11150 Brassica napus HOM05D000989 ORTHO05D001287 5.8e-15 84.3 67 59.7
BolC8t48210H Brassica oleracea HOM05D000989 ORTHO05D001287 5.8e-15 84.3 67 59.7
BraA08t33112Z Brassica rapa HOM05D000989 ORTHO05D001287 5.8e-15 84.3 67 59.7
A01p23230 Brassica napus HOM05D000989 ORTHO05D001287 7.5e-15 84.0 67 62.7
BraA01t02233Z Brassica rapa HOM05D000989 ORTHO05D001287 7.5e-15 84.0 67 62.7
Thhalv10025252m.g Eutrema salsugineum HOM05D000989 ORTHO05D001287 7.5e-15 84.0 67 62.7
THA.LOC104804749 Tarenaya hassleriana HOM05D000989 ORTHO05D001287 7.5e-15 84.0 66 66.7
AL7G41630 Arabidopsis lyrata HOM05D000989 ORTHO05D001287 1.3e-14 83.2 67 61.2
BcaB04g18227 Brassica carinata HOM05D000989 ORTHO05D001287 1.3e-14 83.2 67 58.2
BcaNung00365 Brassica carinata HOM05D000989 ORTHO05D001287 2.2e-14 82.4 67 62.7
THA.LOC104808596 Tarenaya hassleriana HOM05D000989 ORTHO05D001287 3.7e-14 81.6 67 61.2
BcaC09g50112 Brassica carinata HOM05D000989 ORTHO05D001287 4.9e-14 81.3 67 61.2
C01p28870 Brassica napus HOM05D000989 ORTHO05D001287 4.9e-14 81.3 67 61.2
BolC1t02815H Brassica oleracea HOM05D000989 ORTHO05D001287 4.9e-14 81.3 67 61.2
CARHR220720 Cardamine hirsuta HOM05D000989 ORTHO05D001287 4.9e-14 81.3 67 56.7
BcaB06g26437 Brassica carinata HOM05D000989 ORTHO05D001287 1.4e-13 79.7 67 68.7
Sp7g12580 Schrenkiella parvula HOM05D000989 ORTHO05D001287 1.4e-13 79.7 67 59.7
AT4G14500 Arabidopsis thaliana HOM05D000989 ORTHO05D001287 4.1e-13 78.2 67 61.2
Cpa.g.sc58.49 Carica papaya HOM05D000989 ORTHO05D001287 5.4e-13 77.8 56 67.9
Sabra08G0124000 Salix brachista HOM05D000989 ORTHO05D001287 5.0e-11 71.2 68 60.3
Potri.008G162600 Populus trichocarpa HOM05D000989 ORTHO05D001287 8.6e-11 70.5 68 60.3
CSS0021808 Camellia sinensis var. sinensis HOM05D000989 ORTHO05D001287 2.5e-10 68.9 68 50.0
Manes.03G168700 Manihot esculenta HOM05D000989 ORTHO05D001287 4.3e-10 68.2 57 61.4
TWI09G0018 Tripterygium wilfordii HOM05D000989 ORTHO05D001287 4.3e-10 68.2 59 55.9
Hma1.2p1_0650F.1_g195430 Hydrangea macrophylla HOM05D000989 ORTHO05D001287 9.5e-10 67.0 58 56.9
GSVIVG01018120001 Vitis vinifera HOM05D000989 ORTHO05D001287 9.5e-10 67.0 57 59.6
QL06p015767 Quercus lobata HOM05D000989 ORTHO05D001287 1.6e-09 66.2 68 58.8
QL93p0113_0031 Quercus lobata HOM05D000989 ORTHO05D001287 1.6e-09 66.2 68 58.8
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 2.8e-09 65.5 56 57.1
Prupe.1G030900 Prunus persica HOM05D000989 ORTHO05D001287 2.8e-09 65.5 57 57.9
Oeu008794.2 Olea europaea HOM05D000989 ORTHO05D001287 3.6e-09 65.1 57 57.9
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 3.6e-09 65.1 60 56.7
Actinidia04477 Actinidia chinensis HOM05D000989 ORTHO05D001287 4.7e-09 64.7 57 61.4
Potri.010G076500 Populus trichocarpa HOM05D000989 ORTHO05D001287 4.7e-09 64.7 57 59.6
Sc19g0003780 Simmondsia chinensis HOM05D000989 ORTHO05D001287 4.7e-09 64.7 65 49.2
MD13G1207400 Malus domestica HOM05D000989 ORTHO05D001287 6.2e-09 64.3 57 57.9
Cfa008378 Carpinus fangiana HOM05D000989 ORTHO05D001287 8.0e-09 63.9 66 56.1
Haze_11301 Corylus avellana HOM05D000989 ORTHO05D001287 8.0e-09 63.9 68 51.5
Haze_11303 Corylus avellana HOM05D000989 ORTHO05D001287 8.0e-09 63.9 68 51.5
Rhsim04G0190200 Rhododendron simsii HOM05D000989 ORTHO05D001287 8.0e-09 63.9 58 55.2
FAN22G1634 Fragaria x ananassa HOM05D000989 ORTHO05D001287 1.1e-08 63.5 57 56.1
Ciclev10005003m.g Citrus clementina HOM05D000989 ORTHO05D001287 1.4e-08 63.2 60 53.3
FAN12G1302 Fragaria x ananassa HOM05D000989 ORTHO05D001287 1.4e-08 63.2 57 54.4
FAN17G2115 Fragaria x ananassa HOM05D000989 ORTHO05D001287 1.4e-08 63.2 57 54.4
Gohir.D09G056700 Gossypium hirsutum HOM05D000989 ORTHO05D001287 1.8e-08 62.8 60 58.3
Gorai.006G070300 Gossypium raimondii HOM05D000989 ORTHO05D001287 1.8e-08 62.8 60 58.3
TWI73G1262 Tripterygium wilfordii HOM05D000989 ORTHO05D001287 2.3e-08 62.4 59 50.8
Atru.chr4.2228 Acer truncatum HOM05D000989 ORTHO05D001287 3.1e-08 62.0 59 55.9
FvH4_4g02700 Fragaria vesca HOM05D000989 ORTHO05D001287 3.1e-08 62.0 57 52.6
MD16G1209000 Malus domestica HOM05D000989 ORTHO05D001287 5.2e-08 61.2 57 54.4
Gohir.A09G057500 Gossypium hirsutum HOM05D000989 ORTHO05D001287 6.8e-08 60.8 59 57.6
CsaV3_3G012570 Cucumis sativus L. HOM05D000989 ORTHO05D001287 8.9e-08 60.5 65 50.8
PGR004G2641 Punica granatum HOM05D000989 ORTHO05D001287 8.9e-08 60.5 61 50.8
MELO3C006468.2 Cucumis melo HOM05D000989 ORTHO05D001287 1.2e-07 60.1 65 50.8
Glyma.01G234700 Glycine max HOM05D000989 ORTHO05D001287 1.2e-07 60.1 56 55.4
Sed0019938 Sechium edule HOM05D000989 ORTHO05D001287 1.2e-07 60.1 65 52.3
vmacro08413 Vaccinium macrocarpon HOM05D000989 ORTHO05D001287 1.5e-07 59.7 67 46.3
COL.COLO4_15793 Corchorus olitorius HOM05D000989 ORTHO05D001287 2.6e-07 58.9 60 58.3
Duzib212G0433 Durio zibethinus HOM05D000989 ORTHO05D001287 2.6e-07 58.9 68 52.9
Glyma.11G008200 Glycine max HOM05D000989 ORTHO05D001287 2.6e-07 58.9 56 53.6
RcHm_v2.0_Chr4g0390521 Rosa chinensis HOM05D000989 ORTHO05D001287 2.6e-07 58.9 57 52.6
ClCG05G004590 Citrullus lanatus HOM05D000989 ORTHO05D001287 3.4e-07 58.5 66 50.0
TAR362G0659 Trochodendron aralioides HOM05D000989 ORTHO05D001287 3.4e-07 58.5 56 51.8
Thecc.04G246300 Theobroma cacao HOM05D000989 ORTHO05D001287 4.4e-07 58.2 60 56.7
Duzib052G0107 Durio zibethinus HOM05D000989 ORTHO05D001287 5.8e-07 57.8 60 58.3
Hma1.2p1_1276F.1_g272200 Hydrangea macrophylla HOM05D000989 ORTHO05D001287 5.8e-07 57.8 64 45.3
Medtr5g007030 Medicago truncatula HOM05D000989 ORTHO05D001287 5.8e-07 57.8 56 53.6
Actinidia40085 Actinidia chinensis HOM05D000989 ORTHO05D001287 7.5e-07 57.4 57 52.6
CiPaw.02G116200 Carya illinoinensis HOM05D000989 ORTHO05D001287 7.5e-07 57.4 57 56.1
Gohir.D01G022200 Gossypium hirsutum HOM05D000989 ORTHO05D001287 7.5e-07 57.4 61 54.1
Gorai.002G024700 Gossypium raimondii HOM05D000989 ORTHO05D001287 7.5e-07 57.4 61 54.1
Lj6A657G46 Lonicera japonica HOM05D000989 ORTHO05D001287 7.5e-07 57.4 65 50.8
Lalb_Chr09g0320041 Lupinus albus HOM05D000989 ORTHO05D001287 7.5e-07 57.4 67 46.3
Solyc06g053790.3 Solanum lycopersicum HOM05D000989 ORTHO05D001287 7.5e-07 57.4 67 44.8
Sopen06g018910 Solanum pennellii HOM05D000989 ORTHO05D001287 7.5e-07 57.4 67 44.8
CANSAT78G0202 Cannabis sativa HOM05D000989 ORTHO05D001287 9.8e-07 57.0 46 65.2
Migut.N00240 Erythranthe guttata HOM05D000989 ORTHO05D001287 9.8e-07 57.0 57 52.6
MBI11_g20621_MAGBIO Magnolia biondii HOM05D000989 ORTHO05D001287 9.8e-07 57.0 56 53.6
PGSC0003DMG400016320 Solanum tuberosum HOM05D000989 ORTHO05D001287 9.8e-07 57.0 60 48.3
CSS0020273 Camellia sinensis var. sinensis HOM05D000989 ORTHO05D001287 1.3e-06 56.6 57 52.6
CSS0031702 Camellia sinensis var. sinensis HOM05D000989 ORTHO05D001287 1.3e-06 56.6 57 52.6
SGA_v2.0_scaffold308G48106 Striga asiatica HOM05D000989 ORTHO05D001287 1.3e-06 56.6 38 65.8
VMungo1215G3141 Vigna mungo HOM05D000989 ORTHO05D001287 1.3e-06 56.6 38 68.4
Nitab4.5_0007409g0010 Nicotiana tabacum HOM05D000989 ORTHO05D001287 1.7e-06 56.2 61 49.2
Peaxi162Scf00325g00099 Petunia axillaris HOM05D000989 ORTHO05D001287 1.7e-06 56.2 63 50.8
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 2.9e-06 55.5 45 57.8
Eucgr.H03157 Eucalyptus grandis HOM05D000989 ORTHO05D001287 2.9e-06 55.5 60 51.7
Lalb_Chr05g0211171 Lupinus albus HOM05D000989 ORTHO05D001287 3.7e-06 55.1 57 54.4
Nn1g02613 Nelumbo nucifera HOM05D000989 ORTHO05D001287 3.7e-06 55.1 67 49.3
Psat2g189760 Pisum sativum HOM05D000989 ORTHO05D001287 3.7e-06 55.1 56 50.0
Sed0017163 Sechium edule HOM05D000989 ORTHO05D001287 3.7e-06 55.1 64 50.0
Aqoxy5G00318 Aquilegia oxysepala HOM05D000989 ORTHO05D001287 4.9e-06 54.7 56 48.2
Phvul.002G042100 Phaseolus vulgaris HOM05D000989 ORTHO05D001287 6.4e-06 54.3 38 60.5
HPP92_015881 Vanilla planifolia HOM05D000989 ORTHO05D001287 6.4e-06 54.3 57 47.4
Cc03_g04870 Coffea canephora HOM05D000989 ORTHO05D001287 8.3e-06 53.9 60 43.3
Gohir.A01G024200 Gossypium hirsutum HOM05D000989 ORTHO05D001287 8.3e-06 53.9 63 47.6
TPR.G38035 Trifolium pratense HOM05D000989 ORTHO05D001287 8.3e-06 53.9 39 59.0
unitig_32.g10830 Utricularia gibba HOM05D000989 ORTHO05D001287 8.3e-06 53.9 44 52.3


User provided reference genes

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