Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 5.9e-39 163.7 81 100.0
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-37 159.5 79 100.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 9.5e-37 156.4 79 97.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 8.8e-35 149.8 79 93.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.5e-31 137.9 70 95.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 2.0e-23 112.1 79 69.6
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 3.5e-23 111.3 79 72.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 3.5e-23 111.3 79 72.2
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 4.6e-23 110.9 81 69.1
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 5.9e-23 110.5 79 69.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.9e-23 110.5 79 70.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 7.8e-23 110.2 79 70.9
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.3e-22 109.4 79 70.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.3e-22 109.4 79 70.9
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.7e-22 109.0 79 69.6
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.7e-22 109.0 79 69.6
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.3e-22 108.6 79 69.6
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.0e-22 108.2 79 69.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.0e-22 108.2 79 69.6
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 3.0e-22 108.2 79 69.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 3.9e-22 107.8 79 68.4
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.9e-22 107.8 79 67.1
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 3.9e-22 107.8 79 69.6
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.9e-22 107.8 79 68.4
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.9e-22 107.8 79 70.9
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 5.0e-22 107.5 79 70.9
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.0e-22 107.5 79 68.4
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 5.0e-22 107.5 79 69.6
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.0e-22 107.5 79 69.6
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 6.6e-22 107.1 79 69.6
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.6e-22 107.1 79 65.8
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.6e-22 107.1 79 65.8
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 6.6e-22 107.1 79 69.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.6e-22 107.1 79 65.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 8.6e-22 106.7 79 68.4
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 8.6e-22 106.7 79 69.6
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 8.6e-22 106.7 79 68.4
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.1e-21 106.3 79 68.4
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-21 106.3 79 68.4
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.1e-21 106.3 79 68.4
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.1e-21 106.3 79 68.4
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.1e-21 106.3 79 68.4
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.1e-21 106.3 79 68.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-21 105.9 79 67.1
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.5e-21 105.9 79 69.6
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.5e-21 105.9 79 65.8
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.5e-21 105.9 79 67.1
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.5e-21 105.9 79 69.6
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.9e-21 105.5 79 68.4
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.9e-21 105.5 79 69.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.9e-21 105.5 79 64.6
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 70.9
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 67.1
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 69.6
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 65.8
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 64.6
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 64.6
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.5e-21 105.1 79 64.6
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.3e-21 104.8 79 70.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.3e-21 104.8 79 67.1
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 3.3e-21 104.8 79 65.8
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 4.3e-21 104.4 78 69.2
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 5.6e-21 104.0 79 65.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 5.6e-21 104.0 79 65.8
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 5.6e-21 104.0 79 65.8
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.6e-21 104.0 79 65.8
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.6e-21 104.0 79 65.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 65.8
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 64.6
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 7.3e-21 103.6 78 66.7
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 68.4
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 68.4
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 68.4
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 67.1
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 7.3e-21 103.6 79 67.1
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 9.5e-21 103.2 77 64.9
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 9.5e-21 103.2 79 63.3
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.2e-20 102.8 80 66.2
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.2e-20 102.8 79 65.8
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.6e-20 102.4 79 64.6
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.6e-20 102.4 79 65.8
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.6e-20 102.4 79 64.6
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.6e-20 102.4 84 63.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.1e-20 102.1 79 68.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 2.1e-20 102.1 79 65.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.1e-20 102.1 79 64.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.1e-20 102.1 79 63.3
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 4.7e-20 100.9 79 65.8
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.7e-20 100.9 79 65.8
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.7e-20 100.9 79 65.8
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.7e-20 100.9 79 65.8
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 4.7e-20 100.9 79 63.3
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 4.7e-20 100.9 79 64.6
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 4.7e-20 100.9 84 64.3
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 6.2e-20 100.5 79 64.6
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 6.2e-20 100.5 80 66.2
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 6.2e-20 100.5 79 65.8
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 6.2e-20 100.5 79 65.8
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 6.2e-20 100.5 79 65.8
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.0e-20 100.1 79 64.6
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.0e-20 100.1 79 65.8
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.1e-19 99.8 79 64.6
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.1e-19 99.8 77 66.2
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-19 99.8 79 64.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.1e-19 99.8 79 62.0
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.4e-19 99.4 79 60.8
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-19 99.4 77 67.5
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.4e-19 99.4 79 62.0
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.8e-19 99.0 79 64.6
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 2.3e-19 98.6 79 64.6
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.3e-19 98.6 79 64.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 3.1e-19 98.2 79 64.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 4.0e-19 97.8 79 63.3
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.0e-19 97.8 79 63.3
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.0e-19 97.8 79 64.6
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.0e-19 97.8 79 64.6
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.0e-19 97.8 79 64.6
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.2e-18 96.3 79 62.0
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 4.4e-18 94.4 79 62.0
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 5.8e-18 94.0 79 60.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 7.5e-18 93.6 79 59.5
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 2.9e-17 91.7 74 63.5
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.7e-17 91.3 79 58.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 3.7e-17 91.3 79 62.0
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 3.7e-17 91.3 74 63.5
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 6.4e-17 90.5 78 61.5
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 2.4e-16 88.6 69 66.7
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.6e-15 85.9 69 65.2
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 3.5e-15 84.7 61 65.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-14 82.4 61 70.5
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 3.0e-14 81.6 65 66.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 5.0e-14 80.9 79 48.1
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.9e-13 79.0 62 66.1
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 7.3e-13 77.0 86 48.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.2e-12 76.3 79 54.4
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.1e-12 75.5 48 72.9
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 9.9e-10 66.6 46 71.7
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-07 59.7 75 49.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 1.2e-07 59.7 75 49.3
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 6.0e-07 57.4 49 61.2
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 6.0e-07 57.4 41 58.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-06 55.8 56 58.9
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 5.1e-06 54.3 37 62.2


User provided reference genes

Program Settings