Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-127 459.1 228 100.0
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-127 459.1 228 100.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.0e-100 369.4 233 83.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-97 359.8 230 82.6
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.1e-90 337.0 235 73.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 7.1e-90 334.3 233 77.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.2e-89 333.6 233 79.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.0e-88 330.5 233 77.3
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-86 323.2 235 70.6
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-86 323.2 235 70.6
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-86 323.2 235 70.6
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.6e-86 323.2 235 70.6
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.6e-86 323.2 235 70.6
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 5.3e-85 318.2 237 69.6
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 3.6e-73 278.9 236 64.0
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.4e-72 276.9 236 62.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.3e-70 270.4 236 59.7
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.7e-65 252.7 237 57.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.3e-56 223.0 237 51.1
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 6.3e-54 214.9 236 50.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 7.2e-50 201.4 236 48.3
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.4e-47 192.2 232 45.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-45 187.2 236 44.9
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.1e-45 186.0 235 44.3
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 9.1e-45 184.5 235 43.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.7e-44 183.0 232 44.4
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.0e-43 181.0 235 43.4
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.3e-43 180.6 234 44.4
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.9e-43 179.5 240 44.2
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.8e-43 179.1 231 43.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.0e-43 178.7 236 43.2
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.0e-43 178.7 237 43.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.1e-42 177.6 236 43.2
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.5e-42 176.4 232 43.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.2e-42 176.0 232 43.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 9.4e-42 174.5 232 43.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 9.4e-42 174.5 231 42.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 9.4e-42 174.5 232 43.1
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.6e-41 173.7 230 41.7
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.1e-41 173.3 233 43.3
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 4.7e-41 172.2 232 42.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 8.0e-41 171.4 232 42.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.0e-40 171.0 231 42.9
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.4e-40 170.6 239 39.3
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.3e-40 169.9 235 42.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.3e-40 169.9 231 40.7
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.3e-40 169.9 232 42.2
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.0e-40 169.5 234 43.2
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 3.0e-40 169.5 232 42.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 4.0e-40 169.1 218 42.7
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 6.8e-40 168.3 231 39.8
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.8e-40 168.3 232 42.2
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.5e-39 167.2 233 43.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-39 166.8 240 40.4
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-39 166.8 240 40.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.0e-39 166.8 225 43.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.6e-39 166.4 234 41.9
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.6e-39 166.4 232 41.4
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 3.4e-39 166.0 231 43.3
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.4e-39 166.0 216 44.0
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.4e-39 165.6 231 39.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.4e-39 165.6 230 41.7
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 5.7e-39 165.2 232 42.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.5e-39 164.9 232 40.5
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 7.5e-39 164.9 235 40.4
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 9.8e-39 164.5 240 40.4
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.3e-38 164.1 240 40.4
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.3e-38 164.1 220 45.0
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 2.2e-38 163.3 232 40.9
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.7e-38 162.5 233 43.3
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.7e-38 162.5 233 42.9
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.9e-38 162.2 231 40.7
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 6.3e-38 161.8 230 42.2
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.1e-37 161.0 234 41.5
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.4e-37 160.6 216 45.8
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.8e-37 160.2 231 40.7
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.4e-37 159.8 230 41.7
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 5.4e-37 158.7 216 44.9
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.4e-37 158.7 234 40.2
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.4e-37 158.7 232 38.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 9.1e-37 157.9 203 43.3
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.6e-36 157.1 237 39.7
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.7e-36 156.4 232 42.7
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-36 156.4 234 39.3
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-36 156.4 234 39.3
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.5e-36 156.0 220 40.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 4.5e-36 155.6 234 39.3
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.5e-36 155.6 237 40.1
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-35 154.5 234 38.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.0e-35 154.5 235 39.6
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.3e-35 154.1 220 39.5
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.3e-35 154.1 234 38.9
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.7e-35 153.7 197 44.2
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.0e-35 152.1 225 41.8
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.6e-35 151.8 226 42.5
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.5e-34 150.6 235 37.9
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.9e-34 150.2 236 40.3
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.9e-34 150.2 238 38.7
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.5e-34 149.8 228 40.4
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-34 149.4 240 38.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.3e-34 149.4 235 38.3
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.6e-33 147.1 224 41.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.6e-33 147.1 228 37.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.8e-33 146.4 200 42.0
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 3.6e-33 146.0 240 39.2
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.7e-33 145.6 234 39.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.0e-32 144.4 237 39.2
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.8e-32 143.7 231 40.3
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.2e-32 142.1 240 36.7
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 6.8e-32 141.7 157 47.1
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.8e-32 141.7 231 36.8
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.5e-31 140.6 238 37.4
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.6e-31 139.8 236 37.3
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.4e-31 139.4 232 37.5
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 5.7e-31 138.7 232 35.3
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 7.5e-31 138.3 216 38.4
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.3e-30 137.5 234 36.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.2e-30 136.7 233 37.8
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.9e-30 136.3 237 36.3
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.9e-30 135.6 235 36.6
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 8.3e-30 134.8 157 45.9
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.4e-29 134.0 230 38.3
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.4e-29 134.0 234 36.3
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-29 133.3 227 37.4
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 7.0e-29 131.7 233 37.8
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 7.0e-29 131.7 239 36.8
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.6e-28 130.6 225 36.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 4.6e-28 129.0 156 47.4
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 7.8e-28 128.3 150 46.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.8e-28 128.3 169 43.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.3e-27 126.7 200 39.0
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 5.6e-26 122.1 203 38.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.8e-25 119.8 157 42.0
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.6e-25 119.4 217 37.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.6e-25 119.4 205 36.6
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 8.0e-25 118.2 232 32.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.0e-24 117.9 203 37.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.0e-24 117.9 203 37.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.8e-23 112.1 232 33.6
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.8e-23 112.1 152 44.1
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 9.8e-23 111.3 186 37.1
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.3e-22 110.9 201 34.3
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.1e-21 107.8 116 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.4e-21 106.7 222 31.1
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.4e-21 106.7 181 35.4
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.5e-20 102.8 221 33.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 3.5e-20 102.8 164 37.8
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.0e-20 102.1 193 34.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 6.0e-20 102.1 233 32.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-19 99.8 211 34.1
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.9e-18 97.1 218 31.7
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 3.3e-18 96.3 143 38.5
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.2e-17 94.4 189 34.4
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.7e-17 92.4 222 25.2
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 6.2e-17 92.0 125 42.4
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.4e-16 90.9 170 34.7
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-15 87.4 118 42.4
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 4.4e-15 85.9 225 28.0
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 7.5e-15 85.1 82 54.9
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 4.9e-14 82.4 230 26.5
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-13 81.3 203 31.5
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 9.2e-13 78.2 114 38.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.6e-09 67.4 126 35.7
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.1e-09 67.0 114 35.1
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.8e-09 66.6 85 43.5
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.6e-09 66.2 126 34.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 4.7e-09 65.9 94 42.6
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.8e-08 63.9 57 50.9
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 5.2e-08 62.4 112 36.6
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 6.8e-08 62.0 76 43.4
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 6.8e-08 62.0 81 42.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.2e-06 57.0 94 35.1
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 2.9e-06 56.6 184 22.3


User provided reference genes

Program Settings