Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 8.7e-309 1062.8 521 100.0
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.4e-298 1028.9 524 96.2
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 3.1e-298 1027.7 524 95.6
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 3.1e-298 1027.7 524 95.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 2.6e-297 1024.6 524 95.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 4.5e-297 1023.8 524 95.2
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 4.5e-297 1023.8 524 95.2
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.3e-295 1016.1 524 94.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.9e-290 1000.0 521 93.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 3.2e-287 991.1 527 91.8
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.3e-284 981.1 522 91.0
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.5e-281 972.2 528 89.4
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.9e-280 968.0 522 89.7
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.3e-276 954.5 522 89.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.1e-274 947.6 508 90.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 3.4e-273 944.5 525 87.2
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.2e-272 941.8 522 88.7
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 2.2e-272 941.8 522 88.7
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 8.5e-272 939.9 532 85.7
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.9e-271 938.7 521 86.8
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.6e-270 935.6 521 86.8
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.7e-270 934.9 521 86.2
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.1e-270 933.7 521 86.8
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.1e-270 933.7 521 86.8
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.8e-269 932.2 521 87.1
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.8e-269 932.2 521 87.1
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.0e-269 931.4 524 85.7
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 3.0e-269 931.4 521 86.2
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.0e-269 931.4 521 85.8
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 3.0e-269 931.4 529 85.6
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 3.0e-269 931.4 522 86.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.9e-269 931.0 521 86.4
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.0e-268 928.7 519 86.9
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.6e-268 928.3 521 86.4
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.3e-267 926.0 526 85.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-267 926.0 521 85.4
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.3e-267 926.0 525 85.9
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.3e-267 926.0 521 86.6
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.7e-267 924.5 514 87.4
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 6.3e-267 923.7 521 85.8
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 8.2e-267 923.3 519 86.5
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.1e-266 922.9 519 86.7
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.4e-266 922.5 521 85.4
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.1e-266 921.0 521 84.5
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 5.3e-266 920.6 526 84.8
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 7.0e-266 920.2 523 84.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 1.5e-265 919.1 520 85.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.5e-265 919.1 519 86.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.0e-265 918.7 523 85.1
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.0e-265 918.7 521 85.4
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.9e-264 914.8 516 85.5
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.9e-264 914.8 529 84.7
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 6.5e-264 913.7 529 84.9
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.5e-264 913.3 521 85.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 8.5e-264 913.3 505 87.3
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.5e-263 911.8 519 84.6
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 4.2e-263 911.0 527 83.7
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 5.5e-263 910.6 521 84.6
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 5.5e-263 910.6 521 84.1
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 7.2e-263 910.2 505 87.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 7.2e-263 910.2 521 84.3
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.6e-262 909.1 527 82.9
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 3.6e-262 907.9 565 79.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.6e-262 907.9 553 80.7
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 4.7e-262 907.5 527 83.1
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.0e-261 906.4 528 83.1
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.0e-261 906.4 498 86.9
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.3e-261 905.2 528 83.0
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 5.2e-261 904.0 528 82.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 6.7e-261 903.7 528 83.0
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.5e-260 902.5 522 83.9
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.5e-260 902.5 522 83.9
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.0e-260 902.1 522 83.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 9.7e-260 899.8 528 82.0
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 9.7e-260 899.8 505 85.9
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.7e-259 899.0 526 82.9
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.7e-259 897.9 507 84.8
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 4.8e-259 897.5 498 85.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.8e-259 897.5 521 83.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.3e-259 897.1 521 83.5
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.4e-258 895.2 522 82.4
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.4e-258 895.2 518 84.4
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 4.1e-258 894.4 516 85.1
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 4.1e-258 894.4 512 83.8
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 5.3e-258 894.0 521 83.1
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.0e-257 892.1 526 81.7
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 5.9e-257 890.6 526 82.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 5.9e-257 890.6 529 81.3
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.0e-256 889.8 516 82.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 2.2e-256 888.6 522 83.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 2.9e-256 888.3 521 83.1
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 5.0e-256 887.5 523 83.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.5e-256 887.1 521 82.9
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 6.5e-256 887.1 530 81.3
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.1e-255 886.3 509 83.9
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.5e-255 885.9 498 84.5
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 5.5e-255 884.0 532 80.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.6e-254 881.3 546 78.8
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 3.0e-253 878.2 522 81.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 7.5e-252 873.6 522 80.7
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.1e-250 869.8 509 82.7
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.9e-248 861.7 513 79.7
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 7.2e-247 857.1 514 78.2
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.8e-245 852.4 514 78.4
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.3e-240 835.5 524 82.3
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.9e-239 832.4 528 73.9
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 4.2e-239 831.2 564 73.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 6.1e-238 827.4 525 81.3
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.8e-237 825.9 522 78.2
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 5.7e-236 820.8 498 79.3
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.8e-232 808.1 528 72.3
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.0e-228 795.8 521 73.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.4e-226 789.6 500 75.0
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.5e-225 785.0 508 72.2
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.1e-223 780.0 412 92.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 7.3e-223 777.3 503 73.4
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.1e-222 775.8 520 69.0
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.7e-222 774.6 517 70.2
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.1e-221 771.9 517 69.6
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 8.3e-219 763.8 473 81.2
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.9e-215 752.7 521 67.2
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.7e-211 739.6 518 69.3
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 4.3e-207 724.9 521 72.0
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.4e-202 709.1 491 67.0
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.8e-197 693.0 522 69.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 4.0e-189 665.2 379 85.0
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.0e-188 662.9 505 63.8
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.0e-188 662.9 536 59.3
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.9e-179 632.5 346 89.6
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 7.1e-178 627.9 419 76.4
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.8e-173 613.2 344 86.6
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 6.5e-171 604.7 357 86.3
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 6.1e-153 545.0 500 57.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.0e-152 542.7 491 52.3
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.5e-148 530.4 356 77.0
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 7.2e-146 521.5 290 84.8
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.6e-145 520.4 289 85.1
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.4e-135 486.1 275 86.5
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 4.8e-134 482.3 510 50.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.7e-132 476.5 285 85.3
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.0e-128 464.5 502 49.2
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.0e-91 341.7 195 83.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 3.5e-84 316.6 422 39.6
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 3.8e-62 243.4 325 44.9
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 4.9e-62 243.0 398 40.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.5e-50 204.9 120 80.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.3e-43 181.0 93 94.6
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.7e-33 148.3 93 76.3
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.9e-30 137.5 79 81.0
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.5e-29 134.4 76 81.6
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.9e-22 110.9 68 72.1
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.0e-14 85.9 82 57.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.1e-12 78.2 125 41.6
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.3e-09 68.9 48 62.5
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 2.9e-06 57.8 35 71.4


User provided reference genes

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