Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 7.6e-163 577.0 275 100.0
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.7e-130 469.5 265 83.4
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.7e-125 453.0 268 79.1
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 5.3e-124 448.0 267 79.8
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 7.0e-124 447.6 267 79.4
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 4.5e-123 444.9 267 79.0
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 6.5e-122 441.0 267 78.7
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.1e-121 440.3 269 77.3
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 3.4e-110 402.1 267 75.3
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 4.4e-110 401.7 267 74.9
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.7e-109 399.8 270 68.1
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.8e-108 396.4 259 69.1
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 4.1e-108 395.2 259 69.1
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 5.4e-108 394.8 271 69.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 7.0e-108 394.4 268 67.9
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 4.5e-107 391.7 259 68.3
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.9e-107 391.3 270 66.7
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.3e-106 389.4 259 67.6
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 8.6e-106 387.5 269 65.4
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 8.6e-106 387.5 268 66.8
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 1.9e-105 386.3 269 64.7
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 3.3e-105 385.6 271 67.2
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 5.5e-105 384.8 261 67.4
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 7.2e-105 384.4 275 65.1
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 3.6e-104 382.1 265 71.3
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.7e-104 381.7 269 67.7
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 4.7e-104 381.7 271 65.7
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 6.1e-104 381.3 269 66.2
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 8.0e-104 380.9 216 82.9
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.4e-103 380.2 267 72.3
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.4e-103 380.2 267 72.3
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 2.3e-103 379.4 257 65.4
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 3.0e-103 379.0 266 71.8
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 5.2e-103 378.3 265 69.8
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 5.2e-103 378.3 269 64.7
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 5.2e-103 378.3 275 64.0
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 8.9e-103 377.5 259 68.0
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 1.2e-102 377.1 267 73.0
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 3.4e-102 375.6 265 69.4
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 9.8e-102 374.0 257 67.3
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.7e-101 373.2 265 65.3
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 2.2e-101 372.9 270 66.3
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.2e-101 372.9 270 64.4
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.7e-101 372.1 270 61.5
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 8.3e-101 370.9 259 67.2
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.1e-100 368.6 269 62.5
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 7.0e-100 367.9 271 63.1
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 7.0e-100 367.9 270 61.1
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.2e-99 367.1 265 67.5
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.2e-99 367.1 270 63.0
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.7e-99 365.9 267 64.4
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 3.5e-99 365.5 268 62.7
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 5.9e-99 364.8 271 62.4
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.7e-98 363.2 241 67.6
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 2.3e-98 362.8 255 65.9
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 1.1e-97 360.5 269 62.5
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.5e-97 360.1 268 63.1
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.5e-97 360.1 268 62.7
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 4.3e-97 358.6 269 61.3
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 5.6e-97 358.2 269 62.8
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 7.3e-97 357.8 271 63.8
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.2e-96 357.1 270 61.1
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.6e-96 356.7 265 63.4
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.1e-96 356.3 269 62.8
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.8e-96 355.9 269 61.7
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 3.6e-96 355.5 239 66.9
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.6e-96 355.5 269 61.7
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 8.0e-96 354.4 270 60.4
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.4e-95 353.6 271 60.9
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.8e-95 353.2 271 62.7
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 4.0e-95 352.1 269 60.2
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 5.2e-95 351.7 270 60.4
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.6e-94 349.4 269 62.1
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 4.4e-94 348.6 247 64.4
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 4.4e-94 348.6 256 62.5
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 9.8e-94 347.4 269 60.6
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 1.3e-93 347.1 269 60.2
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.7e-93 346.7 257 62.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 3.7e-93 345.5 269 59.9
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 8.3e-93 344.4 270 59.6
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.9e-92 343.2 267 60.7
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 5.4e-92 341.7 269 60.2
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.2e-91 340.5 270 58.5
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.2e-91 340.5 269 59.5
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.6e-91 340.1 266 60.5
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 4.6e-91 338.6 265 59.2
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 6.0e-91 338.2 271 59.4
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.7e-90 336.7 269 58.7
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 2.3e-90 336.3 272 58.1
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 3.0e-90 335.9 272 58.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 6.6e-90 334.7 269 60.2
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 8.6e-90 334.3 227 69.6
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.6e-90 334.3 266 59.8
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.9e-89 333.2 272 58.5
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 1.9e-89 333.2 273 58.2
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 5.6e-89 331.6 269 59.9
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 7.3e-89 331.3 269 57.6
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 3.6e-88 328.9 266 57.5
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 3.6e-88 328.9 275 57.1
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.1e-87 327.4 257 59.9
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.4e-87 327.0 269 55.8
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.4e-86 322.0 255 58.4
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.9e-85 319.3 270 56.3
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 6.4e-85 318.2 255 58.0
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.9e-84 316.6 255 57.3
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 3.2e-84 315.8 215 70.2
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 5.4e-84 315.1 266 56.4
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 4.6e-83 312.0 269 55.4
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.3e-82 310.5 267 54.3
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.7e-82 310.1 259 56.0
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 8.6e-82 307.8 268 53.0
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 8.6e-82 307.8 215 66.0
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.9e-81 306.6 215 66.0
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.5e-81 306.2 282 52.8
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 4.3e-81 305.4 282 52.8
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 9.5e-81 304.3 215 66.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.2e-80 303.9 266 56.0
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 8.1e-80 301.2 271 55.0
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.4e-79 300.4 264 53.4
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.3e-79 299.7 215 67.9
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 4.4e-78 295.4 216 63.9
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 2.9e-77 292.7 215 64.2
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 2.9e-77 292.7 215 64.2
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 4.9e-77 292.0 269 53.2
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 6.4e-77 291.6 221 61.1
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.2e-76 289.3 212 61.3
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 7.1e-76 288.1 261 52.9
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 6.6e-74 281.6 212 63.2
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 3.3e-73 279.3 216 59.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.3e-73 278.9 207 63.8
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.1e-72 276.6 206 63.6
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-71 273.9 206 63.1
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 3.1e-71 272.7 209 61.2
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.2e-70 270.8 201 61.7
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.1e-68 264.2 197 61.4
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.3e-66 256.5 196 60.2
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.1e-65 254.2 204 58.8
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-65 253.8 249 49.8
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 6.2e-64 248.4 269 45.7
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.0e-62 243.4 248 47.6
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 2.2e-61 240.0 265 47.2
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.6e-59 233.8 197 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.7e-58 230.3 238 46.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.7e-58 228.0 247 43.3
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.1e-57 227.6 234 44.4
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.8e-55 220.3 245 42.0
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 6.9e-55 218.4 245 42.0
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 6.4e-53 211.8 214 47.2
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.2e-51 207.6 241 43.6
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 1.2e-51 207.6 206 45.6
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 2.1e-51 206.8 252 40.1
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 3.9e-50 202.6 249 41.4
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 5.1e-50 202.2 201 45.8
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.4e-46 189.5 241 39.8
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.4e-46 189.5 241 39.8
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 5.8e-46 188.7 250 39.6
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.1e-44 184.5 141 63.8
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 5.5e-44 182.2 138 60.9
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 9.6e-41 171.4 143 55.2
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.4e-39 167.5 170 46.5
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.6e-38 161.8 120 66.7
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.2e-36 156.0 157 49.0
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 6.1e-35 152.1 113 61.9
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.1e-33 147.9 119 53.8
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.2e-28 129.4 91 62.6
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 7.2e-20 102.1 175 33.7
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 7.9e-19 98.6 86 51.2
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.3e-18 97.1 68 58.8
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 1.1e-17 94.7 63 66.7
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.6e-17 93.6 57 71.9
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 5.0e-13 79.3 112 41.1
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 9.4e-12 75.1 47 70.2
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 4.0e-10 69.7 40 75.0
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.5e-09 67.8 61 59.0
CBR_g4192 Chara braunii HOM05D000019 ORTHO05D022303 1.8e-07 60.8 83 36.1


User provided reference genes

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