Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.6e-115 419.5 211 100.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 9.3e-60 234.2 191 69.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.0e-54 216.5 117 94.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-54 216.1 171 70.8
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 4.5e-54 215.3 119 91.6
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 1.1e-52 210.7 119 89.9
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.4e-52 210.3 116 91.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.4e-52 210.3 116 91.4
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 3.2e-52 209.1 116 90.5
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 4.2e-52 208.8 116 90.5
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 4.2e-52 208.8 116 90.5
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.0e-51 204.9 116 87.9
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 4.3e-49 198.7 116 87.1
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 9.6e-49 197.6 116 85.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.8e-47 193.4 116 84.5
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 5.8e-46 188.3 121 80.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.5e-38 163.7 120 71.7
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 2.2e-37 159.8 122 71.3
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.9e-37 159.5 120 70.8
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.0e-37 158.7 120 70.8
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 5.0e-37 158.7 120 70.8
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.1e-36 157.5 129 69.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.9e-36 156.8 120 70.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 3.2e-36 156.0 132 62.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 1.6e-35 153.7 114 70.2
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 2.7e-35 152.9 114 70.2
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 3.6e-35 152.5 102 74.5
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 6.1e-35 151.8 119 66.4
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 6.1e-35 151.8 107 70.1
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 7.9e-35 151.4 117 68.4
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 7.9e-35 151.4 102 74.5
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.8e-34 150.2 106 71.7
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.8e-34 150.2 106 71.7
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.8e-34 150.2 124 62.9
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.8e-34 150.2 112 67.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 2.3e-34 149.8 120 65.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.9e-34 149.1 127 63.8
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 8.8e-34 147.9 127 63.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.1e-33 147.5 124 63.7
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.5e-33 147.1 136 57.4
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 1.5e-33 147.1 100 72.0
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 2.0e-33 146.7 115 67.8
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.0e-33 146.7 104 69.2
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 2.0e-33 146.7 109 69.7
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 2.5e-33 146.4 100 73.0
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 2.5e-33 146.4 126 61.1
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 2.5e-33 146.4 122 62.3
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 2.5e-33 146.4 109 68.8
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.5e-33 146.4 109 68.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 2.5e-33 146.4 109 68.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 2.5e-33 146.4 104 70.2
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 3.3e-33 146.0 104 71.2
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 3.3e-33 146.0 104 71.2
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.3e-33 146.0 109 68.8
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 3.3e-33 146.0 122 65.6
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 4.3e-33 145.6 112 64.3
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 4.3e-33 145.6 104 71.2
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 4.3e-33 145.6 126 61.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 4.3e-33 145.6 104 71.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 5.7e-33 145.2 100 71.0
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 5.7e-33 145.2 119 65.5
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 5.7e-33 145.2 127 59.8
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 7.4e-33 144.8 106 66.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 7.4e-33 144.8 118 61.9
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 7.4e-33 144.8 123 63.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 9.7e-33 144.4 129 60.5
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 9.7e-33 144.4 104 69.2
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.3e-32 144.1 121 62.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.7e-32 143.7 120 61.7
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.7e-32 143.7 109 67.0
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 2.2e-32 143.3 126 60.3
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.7e-32 142.5 105 69.5
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 6.3e-32 141.7 128 60.9
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 8.2e-32 141.4 100 69.0
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.1e-31 141.0 126 59.5
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.1e-31 141.0 121 61.2
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.4e-31 140.6 126 59.5
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.4e-31 140.6 126 59.5
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.4e-31 140.6 101 67.3
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 2.4e-31 139.8 108 66.7
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.1e-31 139.4 107 66.4
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.1e-31 139.0 104 68.3
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.1e-31 139.0 126 58.7
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.1e-31 139.0 114 66.7
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 5.3e-31 138.7 101 66.3
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 6.9e-31 138.3 108 65.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 9.1e-31 137.9 101 67.3
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 9.1e-31 137.9 118 60.2
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.2e-30 137.5 100 69.0
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.5e-30 135.6 100 68.0
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 4.5e-30 135.6 94 73.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.7e-29 133.7 125 58.4
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 1.7e-29 133.7 128 59.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 5.0e-29 132.1 101 66.3
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 5.0e-29 132.1 100 67.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.1e-28 131.0 131 55.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.4e-28 130.6 100 67.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.5e-28 129.8 100 66.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.2e-28 129.0 100 67.0
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.2e-27 127.5 99 62.6
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.1e-27 126.7 97 69.1
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.3e-26 123.2 100 64.0
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.9e-26 122.5 100 64.0
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.1e-23 114.4 110 55.5
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.7e-19 99.8 95 54.7
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.4e-18 97.4 126 42.1
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 6.7e-18 95.1 108 47.2
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.0e-17 93.6 121 50.4
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 9.7e-17 91.3 112 45.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.8e-15 87.0 79 54.4
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 2.4e-15 86.7 78 52.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 9.1e-15 84.7 79 53.2
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 5.5e-12 75.5 125 38.4
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 7.2e-12 75.1 85 45.9
A08p11950 Brassica napus HOM05D003513 ORTHO05D004660 9.4e-12 74.7 78 56.4
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 4.4e-09 65.9 32 96.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.3e-08 64.3 32 93.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.3e-08 64.3 73 47.9
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.2e-08 63.5 32 93.8
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 4.8e-08 62.4 32 90.6
BraA08t34268Z Brassica rapa HOM05D055525 ORTHO05D021652 6.3e-08 62.0 29 86.2
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-07 61.2 95 37.9
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-06 57.8 32 84.4
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-06 57.8 32 84.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.7e-06 56.6 28 92.9


User provided reference genes

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