Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-100 369.4 184 100.0
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 3.5e-95 351.7 188 94.7
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 3.5e-95 351.7 188 94.7
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 3.5e-95 351.7 188 94.7
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 7.8e-95 350.5 188 94.7
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.7e-94 349.4 188 94.1
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 5.0e-94 347.8 188 93.6
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 5.0e-94 347.8 188 93.6
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 8.6e-94 347.1 188 92.6
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.1e-93 346.7 188 93.1
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.1e-93 346.7 188 93.1
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-93 346.3 188 93.6
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 4.3e-93 344.7 188 92.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 4.3e-93 344.7 188 92.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 4.3e-93 344.7 188 92.6
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.6e-93 344.4 190 93.2
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.6e-93 344.4 190 93.2
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 3.6e-92 341.7 188 91.5
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 3.6e-92 341.7 188 90.4
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 4.7e-92 341.3 188 91.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 88.8
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.5e-90 334.0 188 89.9
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.9e-89 331.3 188 88.8
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 88.3
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 83.5
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.6e-84 316.2 188 82.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-84 315.8 188 82.4
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 3.6e-84 315.1 188 81.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 3.6e-84 315.1 188 81.4
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.6e-84 315.1 188 82.4
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 3.6e-84 315.1 188 82.4
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.6e-84 315.1 188 81.9
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 4.7e-84 314.7 188 81.9
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 8.0e-84 313.9 188 81.4
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 81.9
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 81.9
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 2.3e-83 312.4 188 80.9
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.0e-83 311.6 188 82.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 8.9e-83 310.5 188 79.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 8.9e-83 310.5 188 80.9
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.5e-82 309.7 188 81.4
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.5e-82 309.7 188 80.3
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 79.8
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 80.9
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 80.3
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 82.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 80.9
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 3.4e-82 308.5 187 80.7
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.8e-82 307.8 188 79.3
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 5.8e-82 307.8 188 80.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 7.5e-82 307.4 188 79.3
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 9.8e-82 307.0 188 81.4
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.3e-81 306.6 188 81.9
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.3e-81 306.6 188 81.4
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.2e-81 305.8 188 79.8
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.7e-81 305.1 188 80.9
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.7e-81 305.1 188 80.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.9e-81 304.7 188 80.9
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 4.9e-81 304.7 188 78.7
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 4.9e-81 304.7 188 79.8
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.4e-80 303.1 188 79.3
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.9e-80 302.8 188 80.3
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.4e-80 302.4 186 79.0
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.2e-80 302.0 179 81.6
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.2e-80 302.0 186 78.5
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 3.2e-80 302.0 186 78.5
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 4.1e-80 301.6 188 80.3
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 4.1e-80 301.6 188 80.3
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 5.4e-80 301.2 188 78.7
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 5.4e-80 301.2 188 77.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 5.4e-80 301.2 188 77.1
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 5.4e-80 301.2 188 78.2
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 7.1e-80 300.8 188 79.8
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 7.1e-80 300.8 188 79.8
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 7.1e-80 300.8 188 79.8
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 9.2e-80 300.4 188 79.3
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.6e-79 299.7 186 78.0
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 80.9
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 2.1e-79 299.3 186 78.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 79.8
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 78.7
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 2.7e-79 298.9 186 78.0
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 4.6e-79 298.1 188 79.8
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 4.6e-79 298.1 188 78.7
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 1.0e-78 297.0 188 77.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 76.1
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 76.6
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.5e-77 293.1 188 78.7
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.5e-77 293.1 180 81.1
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.9e-77 292.7 188 76.6
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 5.6e-77 291.2 188 76.6
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.6e-77 291.2 188 78.7
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 9.5e-77 290.4 188 77.1
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.6e-76 289.7 188 77.7
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.1e-76 289.3 188 78.2
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 3.6e-76 288.5 188 76.6
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 8.1e-76 287.3 188 77.1
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 8.1e-76 287.3 188 77.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 8.1e-76 287.3 188 77.1
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.1e-75 287.0 188 76.1
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 188 76.1
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 188 76.6
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.8e-75 286.2 188 75.0
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.8e-75 286.2 188 76.1
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.0e-75 285.0 188 75.0
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 6.8e-75 284.3 188 74.5
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 6.8e-75 284.3 188 74.5
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.9e-75 283.9 188 74.5
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.2e-74 283.5 188 74.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 9.9e-74 280.4 189 75.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.2e-73 279.3 169 79.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 4.9e-73 278.1 188 75.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.3e-73 277.3 174 78.7
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.9e-72 276.2 189 76.2
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.9e-72 276.2 189 76.2
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 3.2e-72 275.4 184 73.9
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 4.1e-72 275.0 188 71.8
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.4e-72 274.6 188 72.3
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 7.1e-72 274.2 189 75.7
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 72.9
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.6e-71 273.1 180 73.9
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.5e-71 271.9 188 72.3
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 2.3e-70 269.2 189 74.6
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 3.9e-70 268.5 189 74.6
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 2.5e-69 265.8 177 79.1
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.3e-69 265.0 190 71.6
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 7.3e-69 264.2 190 71.6
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 6.2e-68 261.2 188 70.7
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.1e-67 258.8 184 73.4
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.8e-65 251.9 184 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.9e-64 249.6 188 64.9
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 2.4e-64 249.2 188 70.2
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.2e-63 246.9 188 65.4
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.6e-63 246.5 179 70.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.6e-63 246.5 179 69.8
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 7.8e-63 244.2 188 67.0
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 7.8e-63 244.2 188 67.0
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.0e-62 243.8 177 68.9
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.7e-62 243.0 188 65.4
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.5e-61 239.2 189 61.9
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 7.3e-61 237.7 187 62.0
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 9.0e-59 230.7 187 62.6
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.2e-58 230.3 187 59.9
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 3.9e-54 215.3 162 70.4
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 2.1e-52 209.5 188 54.3
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 5.3e-51 204.9 177 58.2
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.9e-49 199.1 184 58.7
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 2.2e-41 172.9 121 70.2
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-39 167.2 167 56.9
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 7.9e-39 164.5 187 46.5
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.8e-38 163.3 123 70.7
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.1e-38 161.8 184 51.1
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.5e-37 159.5 109 74.3
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.6e-36 156.8 115 68.7
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.0e-34 149.8 81 88.9
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 4.6e-31 138.7 137 54.0
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 7.7e-26 121.3 78 76.9
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 3.6e-23 112.5 93 68.8
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 5.1e-22 108.6 64 76.6
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 4.2e-08 62.4 35 85.7


User provided reference genes

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