Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-123 446.4 229 100.0
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 3.3e-111 405.2 268 82.1
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 9.6e-111 403.7 268 81.7
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 4.5e-108 394.8 268 80.2
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.3e-107 393.3 267 79.8
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 5.5e-106 387.9 260 81.2
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 5.5e-106 387.9 268 78.7
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.0e-104 383.6 272 77.2
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.1e-104 381.3 270 77.8
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.6e-102 376.3 267 77.5
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 1.8e-101 372.9 264 78.4
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 5.1e-96 354.8 273 72.5
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 1.9e-95 352.8 251 76.1
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.1e-93 347.1 274 70.8
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-93 346.7 179 97.8
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 2.5e-90 335.9 285 67.4
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.3e-88 329.3 179 91.6
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 3.9e-88 328.6 179 90.5
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 3.3e-87 325.5 276 67.4
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 6.9e-85 317.8 178 87.1
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.2e-84 317.0 201 79.1
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 3.4e-84 315.5 178 86.5
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 4.5e-84 315.1 178 87.1
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 7.7e-84 314.3 178 86.0
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.0e-83 313.9 187 83.4
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.3e-83 313.5 178 85.4
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.3e-83 313.5 178 86.5
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.3e-83 313.5 178 86.5
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.7e-83 313.2 178 86.5
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.2e-83 312.8 220 71.8
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 2.2e-83 312.8 178 86.0
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.9e-83 312.4 178 86.5
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.9e-83 312.4 178 86.5
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.8e-83 312.0 178 86.0
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 5.0e-83 311.6 177 85.9
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 5.0e-83 311.6 178 83.7
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 6.5e-83 311.2 183 82.5
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 6.5e-83 311.2 177 85.9
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 6.5e-83 311.2 178 85.4
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.1e-82 310.5 178 84.8
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 1.4e-82 310.1 177 85.3
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.4e-82 310.1 178 85.4
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.9e-82 309.7 201 76.6
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 2.5e-82 309.3 185 81.6
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.5e-82 309.3 177 85.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 4.2e-82 308.5 177 85.3
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 4.2e-82 308.5 178 84.8
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 4.2e-82 308.5 201 76.6
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 4.2e-82 308.5 178 84.3
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 4.2e-82 308.5 178 84.8
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 5.5e-82 308.1 178 83.1
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 5.5e-82 308.1 178 84.3
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 7.2e-82 307.8 178 84.8
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 7.2e-82 307.8 263 63.1
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 9.4e-82 307.4 178 82.6
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 9.4e-82 307.4 178 84.3
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 9.4e-82 307.4 178 84.3
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.2e-81 307.0 181 82.3
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.2e-81 307.0 178 83.1
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.2e-81 307.0 177 84.2
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.6e-81 306.6 178 83.7
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.6e-81 306.6 178 83.7
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.6e-81 306.6 185 80.5
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.6e-81 306.6 178 84.3
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.6e-81 306.6 178 83.7
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.7e-81 305.8 178 82.0
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 3.6e-81 305.4 178 82.6
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 7.9e-81 304.3 178 83.1
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 7.9e-81 304.3 178 82.0
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.0e-80 303.9 178 83.1
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.0e-80 303.9 178 83.1
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.0e-80 303.9 178 83.1
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.0e-80 303.9 178 83.1
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.4e-80 303.5 178 81.5
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.4e-80 303.5 178 83.1
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.4e-80 303.5 178 82.6
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.4e-80 303.5 178 82.6
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 3.0e-80 302.4 193 76.7
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 3.9e-80 302.0 178 82.0
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 3.9e-80 302.0 178 80.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 3.9e-80 302.0 178 83.7
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 6.7e-80 301.2 204 74.5
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.1e-79 300.4 178 82.0
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.0e-79 299.7 178 83.1
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.0e-79 299.7 178 82.0
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.4e-79 298.5 178 79.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 5.7e-79 298.1 178 80.9
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 2.2e-78 296.2 178 79.8
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.2e-78 296.2 178 79.8
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.2e-78 296.2 178 79.8
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.7e-78 295.4 190 75.8
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 3.7e-78 295.4 178 80.3
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.8e-78 295.0 178 79.2
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.8e-78 295.0 177 80.8
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 6.3e-78 294.7 178 79.2
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 6.3e-78 294.7 174 82.8
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 8.2e-78 294.3 174 80.5
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.1e-77 293.9 177 80.8
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.8e-77 293.1 182 76.9
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.8e-77 293.1 182 76.9
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.1e-77 292.4 178 79.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.0e-77 291.2 177 80.2
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 2.0e-76 289.7 178 78.7
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.9e-75 285.8 178 80.9
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 8.0e-73 277.7 190 69.5
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 6.7e-72 274.6 181 70.2
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 3.3e-71 272.3 169 74.0
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 2.4e-69 266.2 178 74.7
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.1e-66 257.3 178 69.7
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 2.7e-65 252.7 178 73.6
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 2.7e-60 236.1 178 61.8
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 5.2e-56 221.9 182 57.7
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.1e-45 187.6 111 81.1
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.8e-45 186.8 108 82.4
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.9e-44 181.8 117 73.5
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.3e-42 176.0 177 50.3
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 3.2e-37 159.5 180 46.7
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 7.6e-23 111.7 171 35.7
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.3e-18 95.9 75 69.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.0e-15 87.0 56 75.0
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.2e-13 79.7 61 63.9
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 9.3e-13 78.2 45 77.8
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 7.6e-07 58.5 182 24.7
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.7e-06 57.4 207 24.2
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 2.2e-06 57.0 205 24.9
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 8.4e-06 55.1 193 25.4


User provided reference genes

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