Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18150 Brassica carinata HOM05D001738 ORTHO05D001644 8.6e-45 183.3 96 100.0
BcaB04g18152 Brassica carinata HOM05D001738 ORTHO05D001644 9.5e-44 179.9 95 97.9
BcaC01g01546 Brassica carinata HOM05D001738 ORTHO05D001644 1.1e-31 139.8 86 89.5
BolC3t21603H Brassica oleracea HOM05D001738 ORTHO05D001644 1.6e-30 136.0 86 90.7
C03p92980 Brassica napus HOM05D001738 ORTHO05D001644 8.3e-24 113.6 76 82.9
BcaNung02915 Brassica carinata HOM05D001738 ORTHO05D001644 4.6e-22 107.8 97 67.0
Carub.0006s1692 Capsella rubella HOM05D001738 ORTHO05D001644 8.6e-21 103.6 88 69.3
Thhalv10009873m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 2.8e-19 98.6 88 69.3
Thhalv10012265m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.4e-18 96.3 79 73.4
Thhalv10007821m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 5.2e-18 94.4 86 64.0
AT1G09650 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.2e-17 93.2 90 66.7
AL1G43860 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 2.0e-17 92.4 103 56.3
CARHR024930 Cardamine hirsuta HOM05D001738 ORTHO05D001644 2.6e-17 92.0 98 61.2
CARHR008650 Cardamine hirsuta HOM05D001738 ORTHO05D001644 4.4e-17 91.3 91 63.7
C08p16640 Brassica napus HOM05D001738 ORTHO05D001644 9.9e-17 90.1 89 62.9
C07p40890 Brassica napus HOM05D001738 ORTHO05D001644 1.3e-16 89.7 81 67.9
BolC7t44617H Brassica oleracea HOM05D001738 ORTHO05D001644 1.3e-16 89.7 81 67.9
BcaNung02452 Brassica carinata HOM05D001738 ORTHO05D001644 2.9e-16 88.6 81 66.7
AL1G20200 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 3.7e-16 88.2 89 65.2
Carub.0001s2401 Capsella rubella HOM05D001738 ORTHO05D001644 4.9e-16 87.8 99 57.6
AL1G25470 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 8.3e-16 87.0 86 59.3
AL5G25310 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.1e-15 86.7 93 61.3
BraA08t35119Z Brassica rapa HOM05D001738 ORTHO05D001644 1.1e-15 86.7 81 66.7
Thhalv10009459m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.1e-15 86.7 91 62.6
A06p37470 Brassica napus HOM05D001738 ORTHO05D001644 1.4e-15 86.3 81 66.7
AL4G30220 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.9e-15 85.9 93 57.0
Carub.0001s1342 Capsella rubella HOM05D001738 ORTHO05D001644 7.1e-15 84.0 86 60.5
AL6G27180 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.2e-14 83.2 87 60.9
A06p37480 Brassica napus HOM05D001738 ORTHO05D001644 4.6e-14 81.3 75 69.3
BraA06t26672Z Brassica rapa HOM05D001738 ORTHO05D001644 4.6e-14 81.3 75 69.3
CARHR125670 Cardamine hirsuta HOM05D001738 ORTHO05D001644 6.0e-14 80.9 85 58.8
Thhalv10021998m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 7.8e-14 80.5 94 58.5
AT2G34280 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.0e-13 80.1 93 55.9
Carub.0345s0001 Capsella rubella HOM05D001738 ORTHO05D001644 1.7e-13 79.3 79 60.8
AL6G20830 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 2.3e-13 79.0 95 56.8
CARHR124000 Cardamine hirsuta HOM05D001738 ORTHO05D001644 3.0e-13 78.6 86 57.0
CARHR125660 Cardamine hirsuta HOM05D001738 ORTHO05D001644 3.9e-13 78.2 86 57.0
Thhalv10010027m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.1e-12 76.6 89 56.2
BcaB08g37391 Brassica carinata HOM05D001738 ORTHO05D001644 1.5e-12 76.3 93 55.9
BolC8t52365H Brassica oleracea HOM05D001738 ORTHO05D001644 1.5e-12 76.3 101 49.5
AT1G11270 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 1.9e-12 75.9 85 62.4
BolC5t31053H Brassica oleracea HOM05D001738 ORTHO05D001644 1.9e-12 75.9 89 56.2
AL1G37130 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 2.5e-12 75.5 88 53.4
AL1G23150 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 3.3e-12 75.1 87 57.5
BcaNung02775 Brassica carinata HOM05D001738 ORTHO05D001644 5.6e-12 74.3 88 53.4
C02p51740 Brassica napus HOM05D001738 ORTHO05D001644 7.3e-12 73.9 85 56.5
AL5G16800 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 9.6e-12 73.6 86 54.7
AT5G10340 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 9.6e-12 73.6 98 52.0
Aa31sc18G20 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.2e-11 73.2 96 54.2
Thhalv10003053m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.2e-11 73.2 91 52.7
BcaB03g13098 Brassica carinata HOM05D001738 ORTHO05D001644 1.6e-11 72.8 67 61.2
A09p40630 Brassica napus HOM05D001738 ORTHO05D001644 2.1e-11 72.4 92 53.3
C05p23430 Brassica napus HOM05D001738 ORTHO05D001644 2.1e-11 72.4 92 53.3
BraA09t39559Z Brassica rapa HOM05D001738 ORTHO05D001644 2.1e-11 72.4 92 53.3
Carub.0006s0880 Capsella rubella HOM05D001738 ORTHO05D001644 2.8e-11 72.0 97 52.6
A01p12930 Brassica napus HOM05D001738 ORTHO05D001644 3.6e-11 71.6 84 56.0
BraA01t01237Z Brassica rapa HOM05D001738 ORTHO05D001644 3.6e-11 71.6 84 56.0
BcaNung06201 Brassica carinata HOM05D001738 ORTHO05D001644 6.2e-11 70.9 90 53.3
C08p48460 Brassica napus HOM05D001738 ORTHO05D001644 6.2e-11 70.9 90 53.3
BolC2t11259H Brassica oleracea HOM05D001738 ORTHO05D001644 6.2e-11 70.9 85 54.1
Aa31LG8G6310 Aethionema arabicum HOM05D001738 ORTHO05D001644 8.1e-11 70.5 91 53.8
BcaC05g26334 Brassica carinata HOM05D001738 ORTHO05D001644 1.1e-10 70.1 92 52.2
A08p15080 Brassica napus HOM05D001738 ORTHO05D001644 1.1e-10 70.1 66 59.1
BolC5t31054H Brassica oleracea HOM05D001738 ORTHO05D001644 1.1e-10 70.1 92 52.2
BraA08t33488Z Brassica rapa HOM05D001738 ORTHO05D001644 1.1e-10 70.1 66 59.1
BraA10t44220Z Brassica rapa HOM05D001738 ORTHO05D001644 1.1e-10 70.1 91 53.8
CARHR011460 Cardamine hirsuta HOM05D001738 ORTHO05D001644 2.4e-10 68.9 85 51.8
A10p21580 Brassica napus HOM05D001738 ORTHO05D001644 3.1e-10 68.6 89 53.9
BolC3t20600H Brassica oleracea HOM05D001738 ORTHO05D001644 3.1e-10 68.6 66 57.6
AL1G22300 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 4.0e-10 68.2 91 50.5
BcaB08g36707 Brassica carinata HOM05D001738 ORTHO05D001644 4.0e-10 68.2 90 53.3
A09p40640 Brassica napus HOM05D001738 ORTHO05D001644 4.0e-10 68.2 89 52.8
AL7G46450 Arabidopsis lyrata HOM05D000626 ORTHO05D001644 5.2e-10 67.8 78 57.7
BcaNung02774 Brassica carinata HOM05D001541 ORTHO05D001644 5.2e-10 67.8 56 67.9
Aa31LG8G6370 Aethionema arabicum HOM05D001738 ORTHO05D001644 6.8e-10 67.4 82 51.2
AL1G22320 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 6.8e-10 67.4 73 58.9
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 6.8e-10 67.4 80 52.5
A08p31980 Brassica napus HOM05D001738 ORTHO05D001644 8.9e-10 67.0 57 64.9
A09p64540 Brassica napus HOM05D001738 ORTHO05D001644 8.9e-10 67.0 92 46.7
BraA09t41803Z Brassica rapa HOM05D001738 ORTHO05D001644 8.9e-10 67.0 92 46.7
BraA09t41808Z Brassica rapa HOM05D001738 ORTHO05D001644 8.9e-10 67.0 92 46.7
Carub.0008s0923 Capsella rubella HOM05D001738 ORTHO05D001644 8.9e-10 67.0 94 51.1
BcaC04g18725 Brassica carinata HOM05D001738 ORTHO05D001644 1.2e-09 66.6 91 51.6
A09p64530 Brassica napus HOM05D001738 ORTHO05D001644 1.2e-09 66.6 92 46.7
A09p64880 Brassica napus HOM05D001738 ORTHO05D001644 1.2e-09 66.6 92 46.7
BraA09t41802Z Brassica rapa HOM05D001738 ORTHO05D001644 1.2e-09 66.6 92 46.7
Aa31LG8G6350 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.5e-09 66.2 85 51.8
CARHR211720 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.5e-09 66.2 78 55.1
AT5G16285 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 2.0e-09 65.9 75 56.0
BcaB07g30292 Brassica carinata HOM05D001738 ORTHO05D001644 2.0e-09 65.9 92 50.0
A09p64890 Brassica napus HOM05D001738 ORTHO05D001644 2.0e-09 65.9 92 46.7
Aa31LG4G13090 Aethionema arabicum HOM05D001738 ORTHO05D001644 3.4e-09 65.1 91 49.5
Carub.0001s1404 Capsella rubella HOM05D001738 ORTHO05D001644 3.4e-09 65.1 85 56.5
A02p32990 Brassica napus HOM05D001738 ORTHO05D001644 5.8e-09 64.3 94 46.8
BraA02t08324Z Brassica rapa HOM05D001738 ORTHO05D001644 5.8e-09 64.3 94 46.8
CARHR119930 Cardamine hirsuta HOM05D001738 ORTHO05D001644 5.8e-09 64.3 93 46.2
Thhalv10000283m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 9.9e-09 63.5 82 50.0
AL8G23030 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 1.3e-08 63.2 86 51.2
BcaC09g48787 Brassica carinata HOM05D001738 ORTHO05D001644 1.3e-08 63.2 67 55.2
A09p64740 Brassica napus HOM05D001738 ORTHO05D001644 1.3e-08 63.2 61 62.3
C01p46040 Brassica napus HOM05D001738 ORTHO05D001644 1.3e-08 63.2 67 55.2
BolC1t04554H Brassica oleracea HOM05D001738 ORTHO05D001644 1.3e-08 63.2 67 55.2
Sp1g27610 Schrenkiella parvula HOM05D001738 ORTHO05D001644 1.3e-08 63.2 85 47.1
BcaB07g32397 Brassica carinata HOM05D001738 ORTHO05D001644 1.7e-08 62.8 89 48.3
BcaB08g36508 Brassica carinata HOM05D001738 ORTHO05D001644 2.9e-08 62.0 66 51.5
C02p51750 Brassica napus HOM05D001738 ORTHO05D001644 3.8e-08 61.6 88 51.1
C04p12640 Brassica napus HOM05D001738 ORTHO05D001644 3.8e-08 61.6 89 50.6
Thhalv10009680m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.8e-08 61.6 79 49.4
BcaC02g07509 Brassica carinata HOM05D001738 ORTHO05D001644 4.9e-08 61.2 84 45.2
BcaC04g20153 Brassica carinata HOM05D001738 ORTHO05D001644 4.9e-08 61.2 89 50.6
BolC4t28107H Brassica oleracea HOM05D001738 ORTHO05D001644 4.9e-08 61.2 84 45.2
AL4G18870 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 6.4e-08 60.8 52 59.6
A04p28700 Brassica napus HOM05D001738 ORTHO05D001644 6.4e-08 60.8 84 44.0
A04p28750 Brassica napus HOM05D001738 ORTHO05D001644 6.4e-08 60.8 84 44.0
BraA04t18347Z Brassica rapa HOM05D001738 ORTHO05D001644 6.4e-08 60.8 84 44.0
BraA04t18351Z Brassica rapa HOM05D001738 ORTHO05D001644 6.4e-08 60.8 84 44.0
Aa31LG8G6340 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.1e-07 60.1 82 47.6
BcaC07g41803 Brassica carinata HOM05D001738 ORTHO05D001644 1.1e-07 60.1 83 47.0
BolC2t06345H Brassica oleracea HOM05D001738 ORTHO05D001644 1.1e-07 60.1 77 46.8
Thhalv10017550m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.1e-07 60.1 73 53.4
Thhalv10017844m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.1e-07 60.1 85 47.1
BcaC03g13251 Brassica carinata HOM05D001738 ORTHO05D001644 1.4e-07 59.7 78 46.2
C02p03830 Brassica napus HOM05D001738 ORTHO05D001644 1.4e-07 59.7 78 46.2
Aa31LG8G10860 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.9e-07 59.3 51 62.7
A01p36040 Brassica napus HOM05D001738 ORTHO05D001644 1.9e-07 59.3 82 47.6
BraA01t03683Z Brassica rapa HOM05D001738 ORTHO05D001644 1.9e-07 59.3 82 47.6
Thhalv10016004m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.9e-07 59.3 75 50.7
BcaC04g21963 Brassica carinata HOM05D001738 ORTHO05D001644 2.4e-07 58.9 77 46.8
C09p25430 Brassica napus HOM05D001738 ORTHO05D001644 2.4e-07 58.9 77 45.5
BolC9t55443H Brassica oleracea HOM05D001738 ORTHO05D001644 2.4e-07 58.9 77 45.5
Thhalv10028312m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 2.4e-07 58.9 56 62.5
AL1G24890 Arabidopsis lyrata HOM05D001738 ORTHO05D001644 3.2e-07 58.5 86 43.0
A01p36210 Brassica napus HOM05D001738 ORTHO05D001644 3.2e-07 58.5 82 47.6
C04p66030 Brassica napus HOM05D001738 ORTHO05D001644 3.2e-07 58.5 84 44.0
Thhalv10028258m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 3.2e-07 58.5 79 46.8
BcaC05g25187 Brassica carinata HOM05D001738 ORTHO05D001644 5.4e-07 57.8 43 69.8
Thhalv10026946m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 5.4e-07 57.8 87 49.4
BcaB07g33225 Brassica carinata HOM05D001738 ORTHO05D001644 7.1e-07 57.4 58 51.7
BraA01t03696Z Brassica rapa HOM05D001738 ORTHO05D001644 7.1e-07 57.4 82 47.6
Thhalv10023120m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 9.3e-07 57.0 88 42.0
C09p55670 Brassica napus HOM05D001738 ORTHO05D001644 1.2e-06 56.6 90 44.4
Carub.0001s2993 Capsella rubella HOM05D001738 ORTHO05D001644 1.2e-06 56.6 83 42.2
CARHR292150 Cardamine hirsuta HOM05D001738 ORTHO05D001644 1.2e-06 56.6 55 54.5
Thhalv10007816m.g Eutrema salsugineum HOM05D001738 ORTHO05D001644 1.2e-06 56.6 75 46.7
Sp1g28950 Schrenkiella parvula HOM05D001738 ORTHO05D000001 1.2e-06 56.6 85 44.7
Aa31LG5G19260 Aethionema arabicum HOM05D001738 ORTHO05D001644 1.6e-06 56.2 40 75.0
A06p37200 Brassica napus HOM05D005941 ORTHO05D007879 2.1e-06 55.8 70 45.7
Carub.0001s1317 Capsella rubella HOM05D001738 ORTHO05D001644 2.7e-06 55.5 77 50.6
CARHR172670 Cardamine hirsuta HOM05D001738 ORTHO05D011550 2.7e-06 55.5 54 61.1
AT1G12855 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 3.5e-06 55.1 59 50.8
Carub.0001s1261 Capsella rubella HOM05D001738 ORTHO05D001644 3.5e-06 55.1 90 40.0
AT1G14315 Arabidopsis thaliana HOM05D001738 ORTHO05D001644 4.6e-06 54.7 74 54.1
BcaC05g26332 Brassica carinata HOM05D001738 ORTHO05D001644 4.6e-06 54.7 79 50.6
Carub.0001s1263 Capsella rubella HOM05D001738 ORTHO05D001644 4.6e-06 54.7 95 41.1
CARHR134120 Cardamine hirsuta HOM05D005941 ORTHO05D007879 6.0e-06 54.3 71 50.7
BraA06t26643Z Brassica rapa HOM05D005941 ORTHO05D007879 7.8e-06 53.9 70 44.3


User provided reference genes

Program Settings