Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17821 Brassica carinata HOM05D000082 ORTHO05D000038 1.6e-45 185.7 91 100.0
Sp7g24300 Schrenkiella parvula HOM05D000082 ORTHO05D000038 2.1e-29 132.1 112 63.4
AL7G26560 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 4.8e-29 131.0 112 67.0
Thhalv10025560m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 2.6e-27 125.2 111 64.0
BcaC06g32752 Brassica carinata HOM05D000082 ORTHO05D000038 1.7e-26 122.5 102 64.7
AT4G26400 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 3.8e-26 121.3 106 62.3
Carub.0007s1456 Capsella rubella HOM05D000082 ORTHO05D000038 2.5e-25 118.6 115 60.0
BraA01t01714Z Brassica rapa HOM05D000082 ORTHO05D000038 1.2e-24 116.3 113 58.4
BcaC09g50694 Brassica carinata HOM05D000082 ORTHO05D000038 6.0e-24 114.0 116 58.6
A01p17610 Brassica napus HOM05D000082 ORTHO05D000038 1.0e-23 113.2 106 58.5
BcaC06g32754 Brassica carinata HOM05D000082 ORTHO05D000038 3.0e-23 111.7 98 61.2
C07p54860 Brassica napus HOM05D000082 ORTHO05D000038 3.0e-23 111.7 98 61.2
A03p56660 Brassica napus HOM05D000082 ORTHO05D000038 6.7e-23 110.5 98 61.2
BraA03t14736Z Brassica rapa HOM05D000082 ORTHO05D000038 6.7e-23 110.5 98 61.2
BolC7t45974H Brassica oleracea HOM05D000082 ORTHO05D000038 1.5e-22 109.4 98 60.2
BcaNung02425 Brassica carinata HOM05D000082 ORTHO05D000038 1.6e-21 105.9 114 53.5
CARHR233950 Cardamine hirsuta HOM05D000082 ORTHO05D000038 1.1e-20 103.2 101 54.5
BolC1t02151H Brassica oleracea HOM05D000082 ORTHO05D000038 1.0e-18 96.7 95 55.8
C01p22210 Brassica napus HOM05D000082 ORTHO05D000038 8.5e-18 93.6 95 53.7
BcaC01g03951 Brassica carinata HOM05D000082 ORTHO05D032620 1.4e-17 92.8 78 62.8
C03p46800 Brassica napus HOM05D000082 ORTHO05D032620 1.4e-17 92.8 78 62.8
BolC3t16946H Brassica oleracea HOM05D000082 ORTHO05D032620 1.4e-17 92.8 78 62.8
A03p38680 Brassica napus HOM05D000082 ORTHO05D000038 3.2e-17 91.7 84 61.9
Carub.0008s1669 Capsella rubella HOM05D000082 ORTHO05D000038 1.6e-16 89.4 113 48.7
BraA03t13016Z Brassica rapa HOM05D000082 ORTHO05D000038 3.6e-16 88.2 84 60.7
THA.LOC104817732 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.8e-15 85.9 92 48.9
BcaC01g06418 Brassica carinata HOM05D000082 ORTHO05D000038 3.0e-15 85.1 57 68.4
C03p15830 Brassica napus HOM05D000051 ORTHO05D000038 3.0e-15 85.1 57 68.4
BolC3t14013H Brassica oleracea HOM05D000082 ORTHO05D000038 3.0e-15 85.1 57 68.4
Thhalv10013831m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 3.0e-15 85.1 58 69.0
Sp6g18170 Schrenkiella parvula HOM05D000082 ORTHO05D000038 3.0e-15 85.1 57 66.7
A03p13540 Brassica napus HOM05D000051 ORTHO05D000038 3.9e-15 84.7 57 66.7
BcaB08g34343 Brassica carinata HOM05D000082 ORTHO05D000038 8.8e-15 83.6 45 77.8
THA.LOC104811712 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.1e-14 83.2 93 47.3
Aa31LG3G12230 Aethionema arabicum HOM05D000082 ORTHO05D000038 1.5e-14 82.8 119 42.0
Aa31LG5G11750 Aethionema arabicum HOM05D000082 ORTHO05D000038 4.3e-14 81.3 55 67.3
AL419U10010 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 7.4e-14 80.5 60 65.0
AT5G56340 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 1.3e-13 79.7 58 62.1
AL8G31990 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 1.7e-13 79.3 60 63.3
BcaB01g04394 Brassica carinata HOM05D000082 ORTHO05D000038 4.8e-13 77.8 59 61.0
BcaC04g20101 Brassica carinata HOM05D000082 ORTHO05D000038 4.8e-13 77.8 83 50.6
BcaNung05644 Brassica carinata HOM05D000082 ORTHO05D000038 4.8e-13 77.8 59 61.0
A10p13660 Brassica napus HOM05D000082 ORTHO05D000038 4.8e-13 77.8 79 51.9
BraA10t43465Z Brassica rapa HOM05D000082 ORTHO05D000038 4.8e-13 77.8 79 51.9
BraA03t10659Z Brassica rapa HOM05D000051 ORTHO05D000038 6.3e-13 77.4 57 61.4
Manes.15G110700 Manihot esculenta HOM05D000082 ORTHO05D000038 6.3e-13 77.4 56 69.6
Manes.03G086400 Manihot esculenta HOM05D000082 ORTHO05D000038 8.2e-13 77.0 55 69.1
Thhalv10012351m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 1.4e-12 76.3 87 44.8
Glyma.18G000200 Glycine max HOM05D000082 ORTHO05D000038 1.4e-12 76.3 58 58.6
C09p47840 Brassica napus HOM05D000082 ORTHO05D000038 1.8e-12 75.9 41 75.6
BolC9t57622H Brassica oleracea HOM05D000082 ORTHO05D000038 1.8e-12 75.9 41 75.6
CARHR269780 Cardamine hirsuta HOM05D000082 ORTHO05D000038 1.8e-12 75.9 60 61.7
Aa31LG10G720 Aethionema arabicum HOM05D000082 ORTHO05D000038 2.4e-12 75.5 54 57.4
QL01p007939 Quercus lobata HOM05D000082 ORTHO05D000038 3.1e-12 75.1 36 83.3
Sp1g41140 Schrenkiella parvula HOM05D000082 ORTHO05D000038 4.1e-12 74.7 37 75.7
Sed0024247 Sechium edule HOM05D000082 ORTHO05D000038 4.1e-12 74.7 51 60.8
THA.LOC104810315 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 4.1e-12 74.7 37 78.4
TWI32G1072 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 4.1e-12 74.7 109 42.2
CiPaw.14G137100 Carya illinoinensis HOM05D000082 ORTHO05D000038 9.1e-12 73.6 36 80.6
AT1G55530 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 1.2e-11 73.2 97 40.2
Lj6g0015163 Lotus japonicus HOM05D000082 ORTHO05D000038 1.2e-11 73.2 56 55.4
Potri.001G001500 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.2e-11 73.2 58 58.6
AL1G63550 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 1.5e-11 72.8 93 39.8
Ciclev10015642m.g Citrus clementina HOM05D000082 ORTHO05D000038 1.5e-11 72.8 85 42.4
arahy.Tifrunner.gnm1.ann1.GWP2TD Arachis hypogaea HOM05D000082 ORTHO05D000038 2.0e-11 72.4 36 80.6
arahy.Tifrunner.gnm1.ann1.Y7FKEP Arachis hypogaea HOM05D000082 ORTHO05D000038 2.0e-11 72.4 36 80.6
Haze_22922 Corylus avellana HOM05D000082 ORTHO05D000038 3.4e-11 71.6 61 52.5
MBI13_g37423_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 3.4e-11 71.6 58 55.2
Potri.013G060500 Populus trichocarpa HOM05D000082 ORTHO05D000038 3.4e-11 71.6 57 56.1
Sc06g0004160 Simmondsia chinensis HOM05D000082 ORTHO05D000038 3.4e-11 71.6 42 64.3
ClCG02G024470 Citrullus lanatus HOM05D000082 ORTHO05D000038 4.5e-11 71.2 40 67.5
MELO3C014733.2 Cucumis melo HOM05D000082 ORTHO05D000038 4.5e-11 71.2 40 67.5
CsaV3_4G017600 Cucumis sativus L. HOM05D000082 ORTHO05D000038 4.5e-11 71.2 40 67.5
TWI60G1551 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 4.5e-11 71.2 35 80.0
Eucgr.J01748 Eucalyptus grandis HOM05D000082 ORTHO05D000038 5.9e-11 70.9 57 54.4
PSO339G1410 Papaver somniferum HOM05D000082 ORTHO05D000038 5.9e-11 70.9 35 74.3
Potri.003G223200 Populus trichocarpa HOM05D000082 ORTHO05D000038 5.9e-11 70.9 58 56.9
PGR119G2430 Punica granatum HOM05D000082 ORTHO05D000038 5.9e-11 70.9 54 55.6
Sabra01G0001100 Salix brachista HOM05D000082 ORTHO05D000038 5.9e-11 70.9 36 77.8
Duzib106G0436 Durio zibethinus HOM05D000082 ORTHO05D000038 7.7e-11 70.5 58 56.9
PSO384G3570 Papaver somniferum HOM05D000082 ORTHO05D000038 7.7e-11 70.5 35 74.3
FvH4_3g45930 Fragaria vesca HOM05D000082 ORTHO05D000038 1.0e-10 70.1 35 80.0
FAN11G1425 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.0e-10 70.1 35 80.0
FAN21G1382 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.0e-10 70.1 35 80.0
Atru.chr3.2059 Acer truncatum HOM05D000082 ORTHO05D000038 1.7e-10 69.3 43 60.5
Cpa.g.sc119.24 Carica papaya HOM05D000082 ORTHO05D000038 2.2e-10 68.9 63 55.6
Nn7g35812 Nelumbo nucifera HOM05D000082 ORTHO05D000038 2.2e-10 68.9 33 75.8
BcaC01g01532 Brassica carinata HOM05D000082 ORTHO05D000038 2.9e-10 68.6 37 70.3
CARHR045210 Cardamine hirsuta HOM05D000082 ORTHO05D000038 2.9e-10 68.6 101 35.6
Gohir.A03G021800 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.9e-10 68.6 51 58.8
MD03G1001600 Malus domestica HOM05D000082 ORTHO05D000038 2.9e-10 68.6 57 54.4
Rhsim13G0234700 Rhododendron simsii HOM05D000082 ORTHO05D000038 2.9e-10 68.6 42 69.0
COL.COLO4_35071 Corchorus olitorius HOM05D000082 ORTHO05D000038 3.8e-10 68.2 36 72.2
FAN16G3393 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.8e-10 68.2 35 77.1
Gohir.D03G146900 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.8e-10 68.2 36 75.0
Nn2g15896 Nelumbo nucifera HOM05D000082 ORTHO05D000038 3.8e-10 68.2 41 61.0
Ca_16372_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 5.0e-10 67.8 36 69.4
MBI19_g09316_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 5.0e-10 67.8 35 68.6
A08p00570 Brassica napus HOM05D000082 ORTHO05D000038 6.5e-10 67.4 37 67.6
BolC3t21590H Brassica oleracea HOM05D000082 ORTHO05D000038 6.5e-10 67.4 37 67.6
BraA08t32116Z Brassica rapa HOM05D000082 ORTHO05D000038 6.5e-10 67.4 37 67.6
Medtr3g083480 Medicago truncatula HOM05D000082 ORTHO05D000038 6.5e-10 67.4 58 55.2
Thecc.09G198200 Theobroma cacao HOM05D000082 ORTHO05D000038 6.5e-10 67.4 36 72.2
CANSAT11G1170 Cannabis sativa HOM05D000082 ORTHO05D000038 8.5e-10 67.0 45 62.2
MD11G1001300 Malus domestica HOM05D000082 ORTHO05D000038 8.5e-10 67.0 57 50.9
TAR633G0839 Trochodendron aralioides HOM05D000082 ORTHO05D000038 8.5e-10 67.0 35 65.7
Carub.0001s4403 Capsella rubella HOM05D000082 ORTHO05D000038 1.1e-09 66.6 95 37.9
Psat5g102760 Pisum sativum HOM05D000082 ORTHO05D000038 1.1e-09 66.6 58 53.4
Prupe.6G001500 Prunus persica HOM05D000082 ORTHO05D000038 1.1e-09 66.6 34 73.5
Sabra13G0053600 Salix brachista HOM05D000082 ORTHO05D000038 1.1e-09 66.6 51 56.9
Potri.019G032500 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.4e-09 66.2 57 54.4
C03p92840 Brassica napus HOM05D000082 ORTHO05D000038 1.9e-09 65.9 37 64.9
CDE08G1465 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 1.9e-09 65.9 71 45.1
RcHm_v2.0_Chr5g0084041 Rosa chinensis HOM05D000082 ORTHO05D000038 1.9e-09 65.9 35 71.4
Gorai.003G154300 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.2e-09 65.1 36 72.2
Manes.08G148700 Manihot esculenta HOM05D000082 ORTHO05D000038 3.2e-09 65.1 57 49.1
Sabra19G0040900 Salix brachista HOM05D000082 ORTHO05D000038 3.2e-09 65.1 57 52.6
PSO541G5421 Papaver somniferum HOM05D000082 ORTHO05D000038 4.2e-09 64.7 43 60.5
PSO675G9230 Papaver somniferum HOM05D000082 ORTHO05D000038 4.2e-09 64.7 43 60.5
TAR369G1053 Trochodendron aralioides HOM05D000082 ORTHO05D000038 4.2e-09 64.7 35 65.7
TPR.G992 Trifolium pratense HOM05D000082 ORTHO05D000038 5.5e-09 64.3 36 69.4
TAR623G0508 Trochodendron aralioides HOM05D000082 ORTHO05D000038 5.5e-09 64.3 57 50.9
COL.COLO4_36026 Corchorus olitorius HOM05D000082 ORTHO05D000038 7.2e-09 63.9 36 63.9
vmacro04277 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 7.2e-09 63.9 42 61.9
Thecc.05G254800 Theobroma cacao HOM05D000082 ORTHO05D000038 9.4e-09 63.5 36 63.9
Eucgr.B03585 Eucalyptus grandis HOM05D000082 ORTHO05D000038 1.2e-08 63.2 38 63.2
Oeu060909.1 Olea europaea HOM05D000082 ORTHO05D000038 1.2e-08 63.2 58 50.0
Duzib177G0500 Durio zibethinus HOM05D000082 ORTHO05D000038 1.6e-08 62.8 36 63.9
Oeu018900.1 Olea europaea HOM05D000082 ORTHO05D000038 1.6e-08 62.8 36 69.4
Gohir.A13G211100 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.1e-08 62.4 41 61.0
Gohir.D13G215000 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.1e-08 62.4 41 61.0
Gorai.013G245300 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.1e-08 62.4 41 61.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.7e-08 62.0 37 67.6
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.7e-08 62.0 37 67.6
CSS0001326 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 2.7e-08 62.0 36 69.4
Gorai.007G264700 Gossypium raimondii HOM05D000082 ORTHO05D000038 2.7e-08 62.0 36 63.9
A05p17410 Brassica napus HOM05D000082 ORTHO05D000038 3.6e-08 61.6 46 54.3
BraA05t20636Z Brassica rapa HOM05D000082 ORTHO05D000038 3.6e-08 61.6 46 54.3
Nitab4.5_0000075g0240 Nicotiana tabacum HOM05D000082 ORTHO05D000038 3.6e-08 61.6 51 51.0
ATR0068G051 Amborella trichopoda HOM05D000082 ORTHO05D000038 4.7e-08 61.2 38 63.2
A05p36100 Brassica napus HOM05D000082 ORTHO05D000038 4.7e-08 61.2 37 67.6
BraA05t22417Z Brassica rapa HOM05D000082 ORTHO05D000038 4.7e-08 61.2 37 67.6
Gohir.A13G166400 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.7e-08 61.2 36 58.3
Gohir.D11G248320 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.7e-08 61.2 36 63.9
Gohir.D13G169300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.7e-08 61.2 36 58.3
Gorai.013G192600 Gossypium raimondii HOM05D000082 ORTHO05D000038 4.7e-08 61.2 36 58.3
Hma1.2p1_0256F.1_g103320 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 4.7e-08 61.2 58 44.8
Nitab4.5_0002355g0010 Nicotiana tabacum HOM05D000082 ORTHO05D000038 4.7e-08 61.2 51 51.0
Sp3g11620 Schrenkiella parvula HOM05D000082 ORTHO05D000038 4.7e-08 61.2 37 64.9
Sopen01g019480 Solanum pennellii HOM05D000082 ORTHO05D000038 6.1e-08 60.8 38 57.9
PGSC0003DMG400018060 Solanum tuberosum HOM05D000082 ORTHO05D000038 6.1e-08 60.8 57 47.4
GSVIVG01025505001 Vitis vinifera HOM05D000082 ORTHO05D000038 6.1e-08 60.8 50 54.0
BcaC08g44203 Brassica carinata HOM05D000082 ORTHO05D000038 7.9e-08 60.5 38 63.2
C06p16130 Brassica napus HOM05D000082 ORTHO05D000038 7.9e-08 60.5 38 63.2
BolC6t36811H Brassica oleracea HOM05D000082 ORTHO05D000038 7.9e-08 60.5 38 63.2
Migut.N00532 Erythranthe guttata HOM05D000082 ORTHO05D000038 1.0e-07 60.1 34 73.5
Manes.09G143100 Manihot esculenta HOM05D000082 ORTHO05D000038 1.0e-07 60.1 51 47.1
Duzib168G0985 Durio zibethinus HOM05D000082 ORTHO05D000038 1.4e-07 59.7 55 52.7
BcaB02g10816 Brassica carinata HOM05D000082 ORTHO05D000038 1.8e-07 59.3 74 40.5
Ciclev10024260m.g Citrus clementina HOM05D000082 ORTHO05D000038 1.8e-07 59.3 39 56.4
Dinv03794 Davidia involucrata HOM05D000082 ORTHO05D000038 1.8e-07 59.3 57 49.1
Cpa.g.sc51.88 Carica papaya HOM05D000082 ORTHO05D000038 2.3e-07 58.9 56 41.1
Atru.chr2.1301 Acer truncatum HOM05D000082 ORTHO05D000038 3.9e-07 58.2 62 50.0
Gohir.A11G237850 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.1e-07 57.8 36 61.1
Peaxi162Scf00186g00122 Petunia axillaris HOM05D000082 ORTHO05D000038 5.1e-07 57.8 41 53.7
Cc01_g00280 Coffea canephora HOM05D000082 ORTHO05D000038 6.7e-07 57.4 50 54.0
BcaC08g43633 Brassica carinata HOM05D000082 ORTHO05D095941 8.8e-07 57.0 33 69.7
PGR102G0742 Punica granatum HOM05D000082 ORTHO05D000038 1.1e-06 56.6 36 61.1
Gohir.D13G104900 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.5e-06 56.2 34 58.8
Gorai.013G117700 Gossypium raimondii HOM05D000082 ORTHO05D000038 1.5e-06 56.2 34 58.8
HanXRQChr14g0437121 Helianthus annuus HOM05D000082 ORTHO05D000038 1.5e-06 56.2 35 62.9
AL3G25300 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 7.4e-06 53.9 36 61.1
AT3G13430 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 7.4e-06 53.9 74 39.2
BolC6t36127H Brassica oleracea HOM05D000082 ORTHO05D000038 7.4e-06 53.9 37 59.5
HanXRQChr15g0494921 Helianthus annuus HOM05D000082 ORTHO05D000038 7.4e-06 53.9 47 51.1
Zm00001eb128880 Zea mays HOM05D000082 ORTHO05D000038 7.4e-06 53.9 33 63.6
A06p00190 Brassica napus HOM05D000082 ORTHO05D000038 9.7e-06 53.5 35 62.9
C06p10480 Brassica napus HOM05D000082 ORTHO05D000038 9.7e-06 53.5 37 59.5
BraA06t23235Z Brassica rapa HOM05D000082 ORTHO05D000038 9.7e-06 53.5 35 62.9
Cfa009533 Carpinus fangiana HOM05D000082 ORTHO05D000038 9.7e-06 53.5 44 54.5


User provided reference genes

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