Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17746 Brassica carinata HOM05D000511 ORTHO05D095068 1.7e-177 625.9 321 100.0
C04p21880 Brassica napus HOM05D000511 ORTHO05D000413 5.0e-57 225.7 229 60.7
BolC4t23707H Brassica oleracea HOM05D000511 ORTHO05D000413 5.0e-57 225.7 229 60.7
BcaB02g10229 Brassica carinata HOM05D000511 ORTHO05D000413 1.5e-56 224.2 230 61.7
Sp4g11880 Schrenkiella parvula HOM05D000511 ORTHO05D000413 3.4e-53 213.0 245 55.1
BcaC02g11042 Brassica carinata HOM05D000511 ORTHO05D000413 1.3e-52 211.1 223 59.6
Thhalv10016365m.g Eutrema salsugineum HOM05D000511 ORTHO05D000413 4.7e-47 192.6 234 53.0
BraA07t29654Z Brassica rapa HOM05D000511 ORTHO05D000413 4.0e-46 189.5 230 55.7
A07p19480 Brassica napus HOM05D000511 ORTHO05D000413 1.2e-45 188.0 230 54.3
Carub.0004s1006 Capsella rubella HOM05D000511 ORTHO05D000413 2.4e-43 180.3 240 48.8
AL4G23630 Arabidopsis lyrata HOM05D000511 ORTHO05D000413 1.6e-42 177.6 241 51.0
AT2G29065 Arabidopsis thaliana HOM05D000511 ORTHO05D000413 4.3e-40 169.5 240 49.6
CARHR122330 Cardamine hirsuta HOM05D000511 ORTHO05D000413 1.8e-38 164.1 233 47.2
Aa31LG5G7180 Aethionema arabicum HOM05D000511 ORTHO05D000413 1.2e-34 151.4 283 40.6
Thhalv10006948m.g Eutrema salsugineum HOM05D000511 ORTHO05D000413 3.9e-33 146.4 241 42.7
AL1G17700 Arabidopsis lyrata HOM05D000511 ORTHO05D000413 3.6e-31 139.8 273 41.0
Carub.0001s0684 Capsella rubella HOM05D000511 ORTHO05D000413 1.4e-30 137.9 239 41.4
Sp1g06250 Schrenkiella parvula HOM05D000511 ORTHO05D000413 1.8e-30 137.5 238 41.6
Aa31LG1G6990 Aethionema arabicum HOM05D000511 ORTHO05D000413 4.9e-28 129.4 280 37.5
THA.LOC104800674 Tarenaya hassleriana HOM05D000511 ORTHO05D000413 1.1e-27 128.3 254 40.2
BcaB02g06735 Brassica carinata HOM05D000511 ORTHO05D000413 1.4e-27 127.9 235 38.3
BcaC05g24692 Brassica carinata HOM05D000511 ORTHO05D000413 1.2e-26 124.8 236 38.6
AT1G07520 Arabidopsis thaliana HOM05D000511 ORTHO05D000413 1.6e-26 124.4 275 37.8
C05p05530 Brassica napus HOM05D000511 ORTHO05D000413 2.1e-26 124.0 236 39.4
BolC5t29324H Brassica oleracea HOM05D000511 ORTHO05D000413 2.1e-26 124.0 236 39.4
A09p66360 Brassica napus HOM05D000511 ORTHO05D000413 7.8e-26 122.1 229 38.4
BraA09t41973Z Brassica rapa HOM05D000511 ORTHO05D000413 1.3e-25 121.3 229 38.4
BraA09t41972Z Brassica rapa HOM05D000511 ORTHO05D000413 2.3e-25 120.6 227 37.4
BcaC07g42480 Brassica carinata HOM05D000511 ORTHO05D000413 3.0e-25 120.2 229 37.6
CARHR007290 Cardamine hirsuta HOM05D000511 ORTHO05D000413 6.6e-25 119.0 278 34.2
BcaC07g41992 Brassica carinata HOM05D000511 ORTHO05D000413 1.1e-24 118.2 226 38.9
BcaC07g41993 Brassica carinata HOM05D000511 ORTHO05D000413 1.5e-24 117.9 229 38.0
C08p50530 Brassica napus HOM05D000511 ORTHO05D000413 1.5e-24 117.9 229 38.0
C08p50520 Brassica napus HOM05D000511 ORTHO05D000413 3.3e-24 116.7 226 38.9
BolC8t52579H Brassica oleracea HOM05D000511 ORTHO05D000413 3.3e-24 116.7 226 38.5
BolC8t52580H Brassica oleracea HOM05D000511 ORTHO05D000413 4.3e-24 116.3 229 38.4
THA.LOC104815784 Tarenaya hassleriana HOM05D000511 ORTHO05D000413 4.8e-23 112.8 219 39.7
A09p66350 Brassica napus HOM05D000511 ORTHO05D000413 8.1e-23 112.1 228 36.8
BcaC07g42479 Brassica carinata HOM05D000511 ORTHO05D000413 3.4e-21 106.7 244 36.9
BcaB08g36275 Brassica carinata HOM05D000511 ORTHO05D039062 9.3e-19 98.6 69 72.5
BraA10t42866Z Brassica rapa HOM05D000511 ORTHO05D000413 1.9e-16 90.9 177 39.0
Manes.01G171900 Manihot esculenta HOM05D000511 ORTHO05D000413 8.4e-12 75.5 299 32.1
CiPaw.13G092100 Carya illinoinensis HOM05D000511 ORTHO05D000413 1.4e-11 74.7 281 30.6
Duzib168G0531 Durio zibethinus HOM05D000511 ORTHO05D000413 2.4e-11 73.9 298 30.2
arahy.Tifrunner.gnm1.ann1.8X00QX Arachis hypogaea HOM05D000511 ORTHO05D000413 9.3e-11 72.0 247 32.8
TPR.G23625 Trifolium pratense HOM05D000511 ORTHO05D000413 1.2e-10 71.6 271 31.4
arahy.Tifrunner.gnm1.ann1.3U6Z4I Arachis hypogaea HOM05D000511 ORTHO05D000413 1.6e-10 71.2 247 32.4
BcaB02g10231 Brassica carinata HOM05D000511 ORTHO05D039062 2.7e-10 70.5 72 54.2
Sabra16G0146300 Salix brachista HOM05D000511 ORTHO05D000413 3.5e-10 70.1 296 30.1
Duzib150G0542 Durio zibethinus HOM05D000511 ORTHO05D000413 6.0e-10 69.3 255 29.4
TWI79G0938 Tripterygium wilfordii HOM05D000511 ORTHO05D000413 6.0e-10 69.3 301 29.2
Psat7g215200 Pisum sativum HOM05D000511 ORTHO05D000413 7.9e-10 68.9 216 32.4
Prupe.6G074000 Prunus persica HOM05D000511 ORTHO05D000413 7.9e-10 68.9 220 32.3
FvH4_3g36661 Fragaria vesca HOM05D000511 ORTHO05D000413 1.0e-09 68.6 213 33.8
RcHm_v2.0_Chr5g0065511 Rosa chinensis HOM05D000511 ORTHO05D000413 1.0e-09 68.6 243 33.3
FAN25G1593 Fragaria x ananassa HOM05D000511 ORTHO05D000413 1.3e-09 68.2 251 31.5
RcHm_v2.0_Chr5g0065561 Rosa chinensis HOM05D000511 ORTHO05D000413 1.3e-09 68.2 202 35.1
FvH4_3g36570 Fragaria vesca HOM05D000511 ORTHO05D000413 1.8e-09 67.8 201 33.8
FvH4_3g36641 Fragaria vesca HOM05D000511 ORTHO05D000413 1.8e-09 67.8 201 33.3
FAN11G2918 Fragaria x ananassa HOM05D000001 ORTHO05D000413 1.8e-09 67.8 201 33.3
FAN21G2966 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-09 67.8 201 33.3
Potri.001G241800 Populus trichocarpa HOM05D000511 ORTHO05D000413 2.3e-09 67.4 295 29.2
RcHm_v2.0_Chr5g0065491 Rosa chinensis HOM05D000511 ORTHO05D000413 2.3e-09 67.4 247 32.8
Haze_24119 Corylus avellana HOM05D000511 ORTHO05D000413 3.0e-09 67.0 281 28.5
RcHm_v2.0_Chr5g0065481 Rosa chinensis HOM05D000511 ORTHO05D000413 3.9e-09 66.6 243 32.9
Ciclev10027848m.g Citrus clementina HOM05D000511 ORTHO05D000413 5.1e-09 66.2 257 28.4
FAN16G1317 Fragaria x ananassa HOM05D000511 ORTHO05D000413 6.7e-09 65.9 206 34.0
RcHm_v2.0_Chr5g0065461 Rosa chinensis HOM05D000511 ORTHO05D000413 6.7e-09 65.9 204 34.8
Thecc.09G319500 Theobroma cacao HOM05D000511 ORTHO05D000413 6.7e-09 65.9 297 29.6
Glyma.11G138400 Glycine max HOM05D000511 ORTHO05D000413 8.7e-09 65.5 240 29.6
Lalb_Chr14g0375141 Lupinus albus HOM05D000511 ORTHO05D000413 8.7e-09 65.5 264 31.4
Sabra09G0023400 Salix brachista HOM05D000511 ORTHO05D000413 8.7e-09 65.5 295 30.2
Psat7g215160 Pisum sativum HOM05D000511 ORTHO05D000413 1.1e-08 65.1 285 29.5
arahy.Tifrunner.gnm1.ann1.G0Z736 Arachis hypogaea HOM05D000511 ORTHO05D000413 1.5e-08 64.7 285 30.9
Ca_19151_v3 Cicer arietinum L. HOM05D000511 ORTHO05D000413 1.5e-08 64.7 286 30.1
COL.COLO4_18534 Corchorus olitorius HOM05D000511 ORTHO05D000413 1.5e-08 64.7 300 28.3
Gohir.D07G103700 Gossypium hirsutum HOM05D000511 ORTHO05D000413 1.5e-08 64.7 299 30.8
Gorai.001G111600 Gossypium raimondii HOM05D000511 ORTHO05D000413 1.5e-08 64.7 299 30.8
TPR.G23608 Trifolium pratense HOM05D000511 ORTHO05D000413 1.5e-08 64.7 268 29.5
TPR.G23599 Trifolium pratense HOM05D000511 ORTHO05D000413 1.9e-08 64.3 267 28.5
Gohir.A03G043600 Gossypium hirsutum HOM05D000511 ORTHO05D000413 2.5e-08 63.9 297 27.6
Gorai.003G130500 Gossypium raimondii HOM05D000511 ORTHO05D000413 2.5e-08 63.9 297 28.6
TPR.G23630 Trifolium pratense HOM05D000511 ORTHO05D000413 2.5e-08 63.9 257 29.2
CANSAT54G2100 Cannabis sativa HOM05D000511 ORTHO05D000413 3.3e-08 63.5 291 28.5
Ca_01317_v3 Cicer arietinum L. HOM05D000511 ORTHO05D000413 3.3e-08 63.5 239 30.5
Ca_19150_v3 Cicer arietinum L. HOM05D000511 ORTHO05D000413 3.3e-08 63.5 211 29.4
FAN16G2457 Fragaria x ananassa HOM05D000511 ORTHO05D000413 4.3e-08 63.2 197 34.5
Glyma.12G062200 Glycine max HOM05D000511 ORTHO05D000413 4.3e-08 63.2 256 30.5
Medtr4g064120 Medicago truncatula HOM05D000511 ORTHO05D000413 4.3e-08 63.2 230 31.7
MD03G1089800 Malus domestica HOM05D000511 ORTHO05D000413 5.6e-08 62.8 222 32.9
Manes.01G172000 Manihot esculenta HOM05D000511 ORTHO05D000413 5.6e-08 62.8 306 29.1
Potri.009G032800 Populus trichocarpa HOM05D000511 ORTHO05D000413 7.4e-08 62.4 296 29.4
Gohir.A07G099300 Gossypium hirsutum HOM05D000511 ORTHO05D000413 9.6e-08 62.0 300 30.3
MD11G1099100 Malus domestica HOM05D000511 ORTHO05D000413 9.6e-08 62.0 207 33.3
Psat7g215120 Pisum sativum HOM05D000511 ORTHO05D000413 9.6e-08 62.0 207 30.9
Sed0005877 Sechium edule HOM05D000511 ORTHO05D000413 9.6e-08 62.0 236 28.8
Lj3g0022633 Lotus japonicus HOM05D000511 ORTHO05D000413 1.3e-07 61.6 243 31.7
MD03G1089700 Malus domestica HOM05D000511 ORTHO05D000413 1.3e-07 61.6 302 28.8
Potri.009G032700 Populus trichocarpa HOM05D000511 ORTHO05D000413 1.3e-07 61.6 306 28.1
QL01p031257 Quercus lobata HOM05D000511 ORTHO05D000413 1.3e-07 61.6 262 27.5
FvH4_5g17360 Fragaria vesca HOM05D000511 ORTHO05D000413 1.6e-07 61.2 206 34.0
Glyma.12G062000 Glycine max HOM05D000511 ORTHO05D000413 2.1e-07 60.8 233 30.5
Medtr4g064160 Medicago truncatula HOM05D000511 ORTHO05D000413 2.8e-07 60.5 254 27.2
Lalb_Chr24g0394071 Lupinus albus HOM05D000511 ORTHO05D000413 3.7e-07 60.1 275 28.4
Haze_24123 Corylus avellana HOM05D000511 ORTHO05D000413 4.8e-07 59.7 212 33.0
Gohir.D03G123800 Gossypium hirsutum HOM05D000511 ORTHO05D000413 4.8e-07 59.7 267 29.2
QL01p031377 Quercus lobata HOM05D000511 ORTHO05D000413 4.8e-07 59.7 243 31.3
vmacro03058 Vaccinium macrocarpon HOM05D000511 ORTHO05D000413 4.8e-07 59.7 285 26.7
arahy.Tifrunner.gnm1.ann1.1BB2MM Arachis hypogaea HOM05D000511 ORTHO05D000413 6.2e-07 59.3 267 28.8
Medtr4g064180 Medicago truncatula HOM05D000511 ORTHO05D000413 6.2e-07 59.3 231 31.6
Eucgr.B02337 Eucalyptus grandis HOM05D000511 ORTHO05D000413 8.1e-07 58.9 236 30.1
CiPaw.14G067500 Carya illinoinensis HOM05D000511 ORTHO05D000413 1.1e-06 58.5 289 28.0
Eucgr.G02939 Eucalyptus grandis HOM05D000511 ORTHO05D000413 1.1e-06 58.5 234 31.6
Hma1.2p1_0615F.1_g189830 Hydrangea macrophylla HOM05D000511 ORTHO05D000413 1.1e-06 58.5 296 26.7
Phvul.011G063200 Phaseolus vulgaris HOM05D000511 ORTHO05D000413 1.1e-06 58.5 231 30.7
QL01p031328 Quercus lobata HOM05D000511 ORTHO05D000413 1.1e-06 58.5 263 28.1
Rhsim13G0080600 Rhododendron simsii HOM05D000511 ORTHO05D000413 1.1e-06 58.5 292 25.0
ClCG02G020030 Citrullus lanatus HOM05D000511 ORTHO05D000413 1.4e-06 58.2 204 30.9
Hma1.2p1_1420F.1_g282340 Hydrangea macrophylla HOM05D000511 ORTHO05D000413 1.4e-06 58.2 253 29.6
Phvul.011G063300 Phaseolus vulgaris HOM05D000511 ORTHO05D000413 1.4e-06 58.2 258 29.8
Thecc.09G319600 Theobroma cacao HOM05D000511 ORTHO05D000413 1.4e-06 58.2 276 27.5
TWI31G1294 Tripterygium wilfordii HOM05D000511 ORTHO05D000413 1.4e-06 58.2 305 28.9
Prupe.6G073900 Prunus persica HOM05D000511 ORTHO05D000413 1.8e-06 57.8 304 27.6
VMungo1127G0868 Vigna mungo HOM05D000511 ORTHO05D000413 1.8e-06 57.8 261 29.9
Psat5g285280 Pisum sativum HOM05D000511 ORTHO05D000413 2.4e-06 57.4 236 30.5
TPR.G5568 Trifolium pratense HOM05D000511 ORTHO05D000413 2.4e-06 57.4 237 30.0
CANSAT54G0960 Cannabis sativa HOM05D000511 ORTHO05D000413 3.1e-06 57.0 284 29.6
Cpa.g.sc81.125 Carica papaya HOM05D000511 ORTHO05D000413 3.1e-06 57.0 345 28.1
Glyma.11G138100 Glycine max HOM05D000511 ORTHO05D000413 3.1e-06 57.0 238 29.0
Medtr4g064150 Medicago truncatula HOM05D000511 ORTHO05D000413 3.1e-06 57.0 245 28.6
RcHm_v2.0_Chr5g0065581 Rosa chinensis HOM05D000511 ORTHO05D000413 3.1e-06 57.0 243 29.2
RcHm_v2.0_Chr5g0065791 Rosa chinensis HOM05D000511 ORTHO05D000413 3.1e-06 57.0 242 30.2
CSS0044682 Camellia sinensis var. sinensis HOM05D000511 ORTHO05D000413 4.0e-06 56.6 301 26.9
CiPaw.14G067600 Carya illinoinensis HOM05D000511 ORTHO05D000413 4.0e-06 56.6 231 29.9
FAN16G2951 Fragaria x ananassa HOM05D000511 ORTHO05D000413 4.0e-06 56.6 196 31.6
PSO063G0509 Papaver somniferum HOM05D000511 ORTHO05D000413 4.0e-06 56.6 293 30.4
RcHm_v2.0_Chr5g0065571 Rosa chinensis HOM05D000511 ORTHO05D000413 4.0e-06 56.6 240 30.4
arahy.Tifrunner.gnm1.ann1.3IN8BH Arachis hypogaea HOM05D000511 ORTHO05D000413 5.3e-06 56.2 267 28.1
Hma1.2p1_1420F.1_g282330 Hydrangea macrophylla HOM05D000511 ORTHO05D000413 5.3e-06 56.2 224 29.0
Lj3g0025200 Lotus japonicus HOM05D000511 ORTHO05D000413 5.3e-06 56.2 250 31.2
Lalb_Chr01g0003591 Lupinus albus HOM05D000511 ORTHO05D000413 5.3e-06 56.2 211 33.2
RcHm_v2.0_Chr5g0065541 Rosa chinensis HOM05D000511 ORTHO05D000413 5.3e-06 56.2 206 31.6
AL4G23620 Arabidopsis lyrata HOM05D000511 ORTHO05D000413 6.9e-06 55.8 259 29.0
C08p03120 Brassica napus HOM05D000511 ORTHO05D000413 6.9e-06 55.8 231 29.9
BolC8t47110H Brassica oleracea HOM05D000511 ORTHO05D000413 6.9e-06 55.8 231 29.9
CDE08G0123 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 6.9e-06 55.8 253 30.4
QL01p031249 Quercus lobata HOM05D000511 ORTHO05D000413 6.9e-06 55.8 261 28.0
QL01p031206 Quercus lobata HOM05D000511 ORTHO05D000413 9.0e-06 55.5 223 27.8


User provided reference genes

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