Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 7.1e-119 430.6 220 100.0
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 3.4e-113 411.8 220 95.5
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 3.4e-113 411.8 220 95.5
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 8.4e-112 407.1 220 94.1
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 1.1e-111 406.8 220 93.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.4e-111 406.4 220 94.1
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.4e-111 406.4 220 95.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 5.4e-111 404.4 220 95.0
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 6.0e-110 401.0 220 94.1
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 5.1e-109 397.9 220 93.6
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 5.1e-109 397.9 220 93.6
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 5.1e-109 397.9 220 93.6
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 8.6e-109 397.1 220 92.7
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.5e-108 396.4 220 91.4
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.9e-108 396.0 220 91.8
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.5e-108 395.6 220 93.2
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 5.6e-108 394.4 220 90.9
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 9.6e-108 393.7 220 91.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.8e-107 392.1 220 91.4
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 9.3e-103 377.1 221 86.0
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 6.0e-102 374.4 221 85.1
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.0e-101 373.6 221 86.0
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 5.1e-101 371.3 220 84.5
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.6e-101 370.9 221 85.1
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 6.6e-101 370.9 221 85.1
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.1e-100 370.2 220 84.1
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.1e-100 370.2 221 85.1
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 3.3e-100 368.6 220 84.5
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.3e-100 368.6 220 84.1
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 4.3e-100 368.2 221 84.6
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 4.3e-100 368.2 220 85.0
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 9.6e-100 367.1 221 84.2
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 9.6e-100 367.1 216 84.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.6e-99 366.3 217 83.9
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 84.2
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 83.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.6e-99 365.2 221 84.6
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 84.6
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.1e-98 363.6 219 84.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 82.7
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 82.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.8e-98 362.8 221 84.2
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.4e-98 362.5 220 83.6
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.4e-98 362.5 220 83.2
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.4e-98 362.5 220 82.3
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 5.3e-98 361.3 221 82.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 6.9e-98 360.9 220 80.9
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 82.3
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 2.0e-97 359.4 230 80.0
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.0e-97 359.4 221 84.6
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.0e-97 359.4 217 83.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 4.4e-97 358.2 219 82.6
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 4.4e-97 358.2 220 81.8
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.8e-97 357.8 221 82.4
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.4
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 9.9e-97 357.1 218 82.1
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 80.5
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.3e-96 356.7 217 81.6
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 81.4
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.7e-96 356.3 220 81.8
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 81.4
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 80.9
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 3.8e-96 355.1 220 80.9
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 3.8e-96 355.1 219 81.3
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 81.7
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 4.9e-96 354.8 217 82.5
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 6.4e-96 354.4 221 81.4
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 6.4e-96 354.4 218 81.7
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 81.8
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 8.4e-96 354.0 217 81.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 80.0
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.1e-95 353.6 218 81.2
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.4e-95 353.2 217 82.0
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 217 82.0
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 217 82.0
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 217 82.0
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.9e-95 352.8 217 82.0
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 2.4e-95 352.4 217 81.1
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 3.2e-95 352.1 218 80.7
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 4.2e-95 351.7 218 80.3
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 5.4e-95 351.3 221 81.4
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 7.1e-95 350.9 221 80.1
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 7.1e-95 350.9 218 80.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 7.1e-95 350.9 222 81.1
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 9.3e-95 350.5 220 80.5
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 9.3e-95 350.5 218 79.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 80.3
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.6e-94 349.7 218 79.8
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 2.1e-94 349.4 220 80.0
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 2.1e-94 349.4 220 80.0
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 2.1e-94 349.4 221 81.0
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.5e-94 348.6 218 79.8
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 7.9e-94 347.4 220 79.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.0e-93 347.1 221 79.6
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.3e-93 346.7 220 80.0
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 81.3
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 3.9e-93 345.1 217 80.2
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 6.6e-93 344.4 218 80.7
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 6.6e-93 344.4 218 80.7
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 6.6e-93 344.4 221 78.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 8.7e-93 344.0 219 78.5
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 8.7e-93 344.0 214 79.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.7e-93 344.0 222 78.8
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.5
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 79.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 1.9e-92 342.8 214 79.4
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 79.4
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 7.4e-92 340.9 221 77.8
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.6e-91 339.7 221 77.8
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 1.6e-91 339.7 218 78.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.8e-91 339.0 221 76.5
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.6e-91 338.6 222 79.7
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 4.8e-91 338.2 215 79.1
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.2e-91 337.8 219 77.6
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 8.1e-91 337.4 216 79.6
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.4e-90 336.7 226 77.0
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.8e-90 336.3 223 77.6
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.4e-90 335.9 222 76.1
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.9e-87 326.2 220 74.1
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.6e-83 313.2 220 73.2
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.5e-81 306.6 175 84.0
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.9e-80 302.4 165 89.1
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.1e-79 300.4 221 70.6
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.9e-79 299.7 194 77.8
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 2.1e-78 296.2 226 69.0
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.4e-74 283.5 165 85.5
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.6e-73 279.3 163 81.6
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.4e-73 278.9 212 69.3
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 7.6e-73 277.7 173 77.5
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.6e-73 277.7 172 79.1
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.1e-71 273.9 169 79.3
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.2e-70 270.4 169 78.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 3.4e-65 252.3 220 63.6
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 1.2e-62 243.8 219 61.6
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 9.7e-60 234.2 222 60.4
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.4e-58 229.6 220 59.5
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.1e-47 194.1 218 53.7
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 3.0e-45 186.0 214 50.0
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 6.7e-45 184.9 127 73.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.1e-42 177.6 150 58.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 4.5e-41 172.2 140 71.4
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 6.1e-30 135.2 104 70.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.5e-15 86.7 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.5e-15 86.7 59 72.9
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 1.1e-10 71.2 56 71.4
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-07 61.2 57 56.1
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 9.5e-07 58.2 102 40.2
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.2e-06 55.5 58 55.2


User provided reference genes

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