Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17099 Brassica carinata HOM05D001049 ORTHO05D005951 1.7e-101 372.9 210 100.0
BcaB07g33014 Brassica carinata HOM05D001049 ORTHO05D005951 4.8e-40 168.7 148 65.5
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 7.9e-35 151.4 134 64.2
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 2.3e-34 149.8 134 64.2
BolC5t33015H Brassica oleracea HOM05D001049 ORTHO05D005951 2.3e-34 149.8 134 64.2
BcaC05g28235 Brassica carinata HOM05D001049 ORTHO05D005951 3.9e-34 149.1 134 63.4
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 8.7e-34 147.9 134 63.4
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 8.7e-34 147.9 134 63.4
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 1.9e-33 146.7 134 63.4
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 3.3e-33 146.0 139 60.4
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 1.6e-32 143.7 134 61.9
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 6.2e-32 141.7 135 61.5
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 5.3e-31 138.7 134 61.2
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 9.0e-31 137.9 137 59.9
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 9.0e-31 137.9 137 59.9
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 9.0e-31 137.9 134 61.2
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 1.7e-29 133.7 135 60.0
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 8.4e-29 131.3 131 57.3
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 1.4e-28 130.6 133 56.4
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 3.5e-27 125.9 134 57.5
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 3.9e-26 122.5 156 44.9
Actinidia15878 Actinidia chinensis HOM05D001049 ORTHO05D005951 5.1e-26 122.1 134 50.7
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 5.1e-26 122.1 159 46.5
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 5.1e-26 122.1 159 46.5
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 6.7e-26 121.7 132 48.5
Sopen02g030510 Solanum pennellii HOM05D001049 ORTHO05D005951 8.7e-26 121.3 132 49.2
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 8.7e-26 121.3 132 49.2
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 1.1e-25 120.9 132 51.5
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.5e-25 120.6 132 48.5
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 1.5e-25 120.6 132 50.8
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 2.5e-25 119.8 158 44.9
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 2.5e-25 119.8 132 48.5
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 4.3e-25 119.0 135 47.4
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 4.3e-25 119.0 134 49.3
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 5.7e-25 118.6 157 43.9
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 5.7e-25 118.6 161 41.6
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 7.4e-25 118.2 133 48.1
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 7.4e-25 118.2 131 48.1
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 9.7e-25 117.9 157 45.2
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 1.3e-24 117.5 180 41.1
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 1.6e-24 117.1 183 38.3
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 1.6e-24 117.1 132 50.0
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 1.6e-24 117.1 134 47.8
Lj6g0018247 Lotus japonicus HOM05D001049 ORTHO05D005951 1.6e-24 117.1 131 48.1
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 1.6e-24 117.1 157 43.3
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 2.2e-24 116.7 129 50.4
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 2.8e-24 116.3 133 49.6
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 2.8e-24 116.3 129 51.2
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 2.8e-24 116.3 132 49.2
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 2.8e-24 116.3 133 49.6
FvH4_6g45220 Fragaria vesca HOM05D001049 ORTHO05D005951 3.7e-24 115.9 132 49.2
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.7e-24 115.9 132 49.2
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 3.7e-24 115.9 153 43.8
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 6.3e-24 115.2 134 47.8
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 8.2e-24 114.8 133 48.9
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 8.2e-24 114.8 132 49.2
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 1.1e-23 114.4 132 49.2
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 1.1e-23 114.4 132 45.5
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 1.1e-23 114.4 142 46.5
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 1.1e-23 114.4 126 50.0
BcaB06g26054 Brassica carinata HOM05D001049 ORTHO05D005951 1.4e-23 114.0 71 84.5
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 1.4e-23 114.0 132 46.2
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 1.4e-23 114.0 127 48.0
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 1.8e-23 113.6 134 46.3
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 2.4e-23 113.2 130 46.9
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 3.1e-23 112.8 129 46.5
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 3.1e-23 112.8 126 50.0
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 3.1e-23 112.8 132 45.5
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 3.1e-23 112.8 132 47.0
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 4.1e-23 112.5 131 48.1
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 4.1e-23 112.5 132 47.0
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 5.3e-23 112.1 129 48.1
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 5.3e-23 112.1 135 46.7
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 6.9e-23 111.7 131 46.6
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 6.9e-23 111.7 138 47.1
Nn3g17797 Nelumbo nucifera HOM05D001049 ORTHO05D005951 9.0e-23 111.3 133 45.9
COL.COLO4_25242 Corchorus olitorius HOM05D001049 ORTHO05D005951 2.0e-22 110.2 103 59.2
Gohir.D07G121000 Gossypium hirsutum HOM05D001049 ORTHO05D005951 2.0e-22 110.2 133 45.9
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 2.0e-22 110.2 131 46.6
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 2.0e-22 110.2 131 45.8
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 3.4e-22 109.4 169 39.6
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 5.9e-22 108.6 134 45.5
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 7.7e-22 108.2 128 45.3
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 1.0e-21 107.8 126 47.6
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 1.0e-21 107.8 171 37.4
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 1.0e-21 107.8 133 45.1
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 1.3e-21 107.5 132 45.5
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 1.7e-21 107.1 137 43.1
MELO3C017636.2 Cucumis melo HOM05D001049 ORTHO05D005951 1.7e-21 107.1 131 45.0
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 1.7e-21 107.1 133 45.9
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 2.2e-21 106.7 131 46.6
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 6.5e-21 105.1 174 37.9
DCAR_019602 Daucus carota HOM05D001049 ORTHO05D005951 1.4e-20 104.0 147 42.2
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 1.4e-20 104.0 135 45.2
CDE05G2137 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 1.9e-20 103.6 134 42.5
BolC8t47349H Brassica oleracea HOM05D001049 ORTHO05D005951 7.2e-20 101.7 110 52.7
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 7.2e-20 101.7 160 40.6
Hma1.2p1_3581F.1_g336840 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 4.6e-19 99.0 134 45.5
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 6.1e-19 98.6 130 44.6
BcaB08g34532 Brassica carinata HOM05D001049 ORTHO05D005951 1.4e-18 97.4 128 48.4
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 2.3e-18 96.7 128 43.0
Mapoly0012s0011 Marchantia polymorpha HOM05D001049 ORTHO05D005951 3.0e-18 96.3 180 34.4
SMO367G1106 Selaginella moellendorffii HOM05D001049 ORTHO05D005951 6.7e-18 95.1 178 34.3
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 9.7e-17 91.3 176 33.0
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 9.7e-17 91.3 135 42.2
MD09G1086400 Malus domestica HOM05D001049 ORTHO05D005951 1.3e-16 90.9 128 40.6
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.2e-16 90.1 116 47.4
CAN.G852.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.4e-15 87.4 64 60.9
MBI19_g21650_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D005951 4.1e-15 85.9 63 65.1
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 2.6e-14 83.2 155 36.8
MD09G1086700 Malus domestica HOM05D001049 ORTHO05D005951 5.9e-14 82.0 151 35.8
Cre12.g551850 Chlamydomonas reinhardtii HOM05D001049 ORTHO05D005951 3.8e-13 79.3 127 40.2
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 6.5e-13 78.6 103 44.7
GSVIVG01014385001 Vitis vinifera HOM05D001049 ORTHO05D005951 4.2e-12 75.9 101 42.6
MCO06G260 Micromonas commoda HOM05D001049 ORTHO05D005951 2.1e-11 73.6 136 42.6
BcaC07g37699 Brassica carinata HOM05D001049 ORTHO05D005951 1.4e-10 70.9 86 47.7
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 1.8e-10 70.5 95 41.1
TAR371G1234 Trochodendron aralioides HOM05D001049 ORTHO05D005951 5.1e-10 68.9 134 35.1
SEGI_24969 Sequoiadendron giganteum HOM05D001049 ORTHO05D005951 7.4e-09 65.1 86 44.2
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 3.7e-08 62.8 103 35.9
QL11p002540 Quercus lobata HOM05D000432 ORTHO05D000320 1.4e-07 60.8 104 36.5
BolC8t48085H Brassica oleracea HOM05D001049 ORTHO05D005951 7.0e-07 58.5 93 41.9
TAR183G0004 Trochodendron aralioides HOM05D001049 ORTHO05D005951 2.0e-06 57.0 44 56.8
SHI03727 Sapria himalayana HOM05D001049 ORTHO05D005951 5.9e-06 55.5 55 50.9
ATR0564G359 Amborella trichopoda HOM05D001049 ORTHO05D005951 7.7e-06 55.1 85 40.0


User provided reference genes

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