Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17075 Brassica carinata HOM05D002856 ORTHO05D021802 2.2e-79 299.3 197 100.0
BcaB01g03465 Brassica carinata HOM05D000039 ORTHO05D000370 1.4e-41 173.7 127 74.0
A04p17260 Brassica napus HOM05D002856 ORTHO05D003246 6.5e-31 138.3 206 49.0
A06p15910 Brassica napus HOM05D000711 ORTHO05D000545 1.8e-20 103.6 273 37.7
BolC5t30529H Brassica oleracea HOM05D000711 ORTHO05D000545 3.9e-20 102.4 273 36.6
BraA06t24702Z Brassica rapa HOM05D000711 ORTHO05D000545 3.9e-20 102.4 276 37.3
C05p18220 Brassica napus HOM05D000711 ORTHO05D000545 8.8e-20 101.3 273 37.4
C09p11400 Brassica napus HOM05D002856 ORTHO05D017644 3.1e-17 92.8 104 57.7
A02p34410 Brassica napus HOM05D002856 ORTHO05D017644 8.5e-15 84.7 112 51.8
BraA02t08452Z Brassica rapa HOM05D002856 ORTHO05D017644 8.5e-15 84.7 112 51.8
C07p07530 Brassica napus HOM05D000711 ORTHO05D021802 1.1e-14 84.3 250 38.4
BolC7t41171H Brassica oleracea HOM05D000711 ORTHO05D021802 1.1e-14 84.3 250 38.4
C01p42220 Brassica napus HOM05D002856 ORTHO05D003246 3.2e-14 82.8 56 76.8
BcaB07g31993 Brassica carinata HOM05D000711 ORTHO05D000545 9.4e-14 81.3 143 42.7
A02p31080 Brassica napus HOM05D000711 ORTHO05D021802 1.6e-13 80.5 182 42.3
BcaC09g49507 Brassica carinata HOM05D002856 ORTHO05D003246 4.7e-13 79.0 58 72.4
C01p35760 Brassica napus HOM05D002856 ORTHO05D003246 4.7e-13 79.0 58 72.4
BolC1t03537H Brassica oleracea HOM05D002856 ORTHO05D003246 4.7e-13 79.0 58 72.4
BraA01t02951Z Brassica rapa HOM05D002856 ORTHO05D003246 4.7e-13 79.0 58 72.4
Sp2g05450 Schrenkiella parvula HOM05D002856 ORTHO05D003246 4.7e-13 79.0 58 72.4
A01p28190 Brassica napus HOM05D002856 ORTHO05D003246 2.3e-12 76.6 58 70.7
BolC9t54028H Brassica oleracea HOM05D002856 ORTHO05D017644 2.3e-12 76.6 131 44.3
Thhalv10023489m.g Eutrema salsugineum HOM05D002856 ORTHO05D003246 2.3e-12 76.6 45 86.7
BcaB04g20187 Brassica carinata HOM05D002856 ORTHO05D003246 3.0e-12 76.3 58 70.7
Sp1g17600 Schrenkiella parvula HOM05D000711 ORTHO05D000545 5.2e-12 75.5 275 32.0
CARHR053920 Cardamine hirsuta HOM05D002856 ORTHO05D003246 6.7e-12 75.1 58 69.0
AL2G18080 Arabidopsis lyrata HOM05D002856 ORTHO05D003246 1.1e-11 74.3 45 84.4
AT1G58120 Arabidopsis thaliana HOM05D002856 ORTHO05D003246 1.1e-11 74.3 45 84.4
A09p18530 Brassica napus HOM05D002856 ORTHO05D003246 4.4e-11 72.4 58 63.8
BraA09t37479Z Brassica rapa HOM05D002856 ORTHO05D003246 4.4e-11 72.4 58 63.8
Aa31LG2G10970 Aethionema arabicum HOM05D002856 ORTHO05D003246 9.7e-11 71.2 58 65.5
BcaC04g22118 Brassica carinata HOM05D002856 ORTHO05D003246 9.7e-11 71.2 58 62.1
C09p23140 Brassica napus HOM05D002856 ORTHO05D003246 9.7e-11 71.2 58 62.1
BolC9t55233H Brassica oleracea HOM05D002856 ORTHO05D003246 9.7e-11 71.2 58 62.1
Carub.0002s0649 Capsella rubella HOM05D002856 ORTHO05D003246 3.7e-10 69.3 58 65.5
BcaC03g17720 Brassica carinata HOM05D002856 ORTHO05D003246 4.1e-09 65.9 40 85.0
C07p17370 Brassica napus HOM05D002856 ORTHO05D021802 4.1e-09 65.9 40 85.0
Thhalv10009634m.g Eutrema salsugineum HOM05D000711 ORTHO05D000545 5.3e-09 65.5 144 41.0
AL1G32500 Arabidopsis lyrata HOM05D000711 ORTHO05D000545 7.0e-09 65.1 277 30.3
CARHR020300 Cardamine hirsuta HOM05D000711 ORTHO05D000545 9.1e-09 64.7 274 29.2
BcaB03g14436 Brassica carinata HOM05D000711 ORTHO05D000545 1.2e-08 64.3 42 76.2
THA.LOC104816801 Tarenaya hassleriana HOM05D002856 ORTHO05D003246 3.5e-08 62.8 64 59.4
BcaB03g14377 Brassica carinata HOM05D000711 ORTHO05D000545 5.9e-08 62.0 273 29.7
C07p23850 Brassica napus HOM05D000711 ORTHO05D000545 5.9e-08 62.0 272 29.8
BolC7t42907H Brassica oleracea HOM05D000711 ORTHO05D000545 5.9e-08 62.0 273 29.7
AT1G19790 Arabidopsis thaliana HOM05D000711 ORTHO05D000545 1.3e-07 60.8 42 73.8
C08p06170 Brassica napus HOM05D029526 ORTHO05D017644 1.7e-07 60.5 40 82.5
BolC8t47461H Brassica oleracea HOM05D029526 ORTHO05D017644 1.7e-07 60.5 40 82.5
THA.LOC104820197 Tarenaya hassleriana HOM05D002856 ORTHO05D003246 1.7e-07 60.5 65 56.9
C02p31290 Brassica napus HOM05D029526 ORTHO05D017644 3.8e-07 59.3 76 50.0
Cpa.g.c34898 Carica papaya HOM05D002856 ORTHO05D003246 6.5e-07 58.5 57 56.1
Glyma.04G091900 Glycine max HOM05D002856 ORTHO05D003246 1.9e-06 57.0 57 52.6
Prupe.1G529700 Prunus persica HOM05D002856 ORTHO05D003246 2.5e-06 56.6 58 60.3
BcaC08g46872 Brassica carinata HOM05D002856 ORTHO05D021802 5.5e-06 55.5 31 83.9
Carub.0001s1932 Capsella rubella HOM05D000711 ORTHO05D000545 5.5e-06 55.5 43 69.8
LjContig00408g0011956 Lotus japonicus HOM05D002856 ORTHO05D003246 7.2e-06 55.1 57 59.6
TPR.G26510 Trifolium pratense HOM05D002856 ORTHO05D003246 7.2e-06 55.1 57 52.6
MD09G1227400 Malus domestica HOM05D002856 ORTHO05D003246 9.4e-06 54.7 58 58.6


User provided reference genes

Program Settings