Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17057 Brassica carinata HOM05D004428 ORTHO05D006381 1.2e-127 459.9 234 100.0
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 8.6e-115 417.2 239 90.0
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 1.5e-114 416.4 239 89.5
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 1.5e-114 416.4 239 89.5
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 6.2e-113 411.0 239 90.0
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 2.3e-112 409.1 239 89.1
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 2.1e-105 386.0 241 83.8
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 2.9e-102 375.6 243 81.5
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 2.9e-102 375.6 245 82.0
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 1.4e-101 373.2 242 82.6
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 1.9e-101 372.9 242 81.8
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 2.7e-100 369.0 242 81.4
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 1.5e-98 363.2 245 79.2
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 3.3e-98 362.1 245 79.6
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 4.9e-94 348.2 242 76.4
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 6.4e-94 347.8 247 77.7
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 7.1e-93 344.4 230 78.3
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 1.2e-92 343.6 212 85.8
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 1.4e-88 330.1 243 73.7
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 3.4e-87 325.5 245 71.4
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 6.9e-80 301.2 245 64.1
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 4.5e-79 298.5 245 63.7
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 9.9e-79 297.4 249 63.9
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 1.9e-77 293.1 245 61.6
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 3.2e-77 292.4 244 62.7
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 1.2e-76 290.4 242 62.8
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 2.1e-76 289.7 245 62.0
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 3.0e-75 285.8 250 62.4
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 8.7e-75 284.3 232 62.1
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 8.7e-75 284.3 247 61.9
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 1.5e-74 283.5 247 61.1
CANSAT56G1871 Cannabis sativa HOM05D004428 ORTHO05D006381 3.3e-74 282.3 245 60.8
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 3.3e-74 282.3 247 60.7
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 3.3e-74 282.3 247 61.5
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 9.6e-74 280.8 245 61.2
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 9.6e-74 280.8 231 62.3
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 1.3e-73 280.4 244 62.3
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 1.6e-73 280.0 247 62.3
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 2.1e-73 279.6 245 60.4
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.8e-73 279.3 247 60.7
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 3.6e-73 278.9 250 60.4
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 4.8e-73 278.5 244 60.7
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 8.1e-73 277.7 245 61.2
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 1.1e-72 277.3 246 59.3
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 1.1e-72 277.3 242 61.2
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 3.1e-72 275.8 244 61.5
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 4.0e-72 275.4 245 61.6
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 5.3e-72 275.0 252 58.3
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 5.3e-72 275.0 242 61.6
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 5.3e-72 275.0 242 62.0
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 5.3e-72 275.0 246 58.9
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 5.3e-72 275.0 247 61.1
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 5.3e-72 275.0 241 60.6
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 1.5e-71 273.5 242 62.4
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.5e-71 273.5 246 61.0
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 2.0e-71 273.1 244 60.2
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 2.6e-71 272.7 239 60.7
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 3.4e-71 272.3 232 59.1
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 4.5e-71 271.9 242 60.3
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 4.5e-71 271.9 232 59.1
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 7.6e-71 271.2 246 58.9
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 1.7e-70 270.0 222 64.9
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 2.9e-70 269.2 243 60.5
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 3.8e-70 268.9 228 59.2
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 4.9e-70 268.5 249 60.2
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 4.9e-70 268.5 211 64.5
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 6.4e-70 268.1 242 62.0
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 8.4e-70 267.7 255 58.8
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 1.1e-69 267.3 231 61.5
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 1.1e-69 267.3 247 58.3
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 3.2e-69 265.8 222 63.5
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 3.2e-69 265.8 222 63.5
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 3.2e-69 265.8 243 58.8
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 1.6e-68 263.5 247 56.7
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 2.1e-68 263.1 241 60.6
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 3.5e-68 262.3 240 57.9
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 3.5e-68 262.3 245 60.0
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 3.9e-67 258.8 245 59.2
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 3.9e-67 258.8 245 58.4
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 8.7e-67 257.7 243 59.3
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 7.4e-66 254.6 247 58.7
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 1.3e-65 253.8 244 57.4
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 1.3e-65 253.8 247 57.1
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 1.6e-65 253.4 232 58.2
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.6e-65 253.4 239 56.9
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 6.2e-65 251.5 239 56.5
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 6.2e-65 251.5 243 56.8
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 6.2e-65 251.5 243 57.2
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 8.1e-65 251.1 244 55.7
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 2.4e-64 249.6 243 56.8
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.4e-64 249.6 243 56.8
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 5.3e-64 248.4 232 56.9
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 6.9e-64 248.1 245 57.6
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 9.0e-64 247.7 224 58.0
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.2e-63 247.3 247 57.1
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 2.0e-63 246.5 247 57.1
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 3.4e-63 245.7 243 56.0
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 4.5e-63 245.4 241 57.7
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 1.0e-62 244.2 244 55.7
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.0e-62 244.2 216 60.2
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 1.3e-62 243.8 247 57.1
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 2.9e-62 242.7 237 60.8
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 3.8e-62 242.3 231 57.1
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 4.9e-62 241.9 246 55.3
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 6.5e-62 241.5 225 59.6
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 2.5e-61 239.6 234 58.5
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 2.7e-60 236.1 241 52.3
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 2.3e-59 233.0 241 54.8
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 1.1e-56 224.2 241 55.2
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 1.8e-56 223.4 264 51.5
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 4.1e-56 222.2 248 52.0
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 5.3e-56 221.9 244 53.7
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 1.9e-53 213.4 244 49.2
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 3.7e-49 199.1 332 42.8
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.8e-48 196.8 248 45.6
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 2.6e-47 193.0 245 47.3
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 5.9e-47 191.8 246 47.2
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 6.1e-44 181.8 237 47.7
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 2.3e-43 179.9 237 47.3
CDE05G2001 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 3.0e-43 179.5 248 44.8
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 3.0e-43 179.5 237 47.7
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 3.3e-42 176.0 217 47.0
PSO063G3671 Papaver somniferum HOM05D004428 ORTHO05D006381 3.3e-42 176.0 238 47.5
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 1.0e-38 164.5 208 44.7
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 1.2e-36 157.5 236 41.9
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 2.1e-36 156.8 241 44.8
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 2.7e-36 156.4 174 45.4
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 1.8e-35 153.7 149 53.7
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 2.0e-34 150.2 122 58.2
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 3.5e-31 139.4 216 40.3
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 1.5e-29 134.0 129 58.1
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 2.3e-14 83.6 192 32.3
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 1.6e-12 77.4 158 32.3
PRCOL_00005736 Prasinoderma coloniale HOM05D004428 ORTHO05D006381 6.8e-11 72.0 239 30.1
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 8.8e-11 71.6 170 36.5
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 5.7e-10 68.9 244 29.9
Carub.0001s0605 Capsella rubella HOM05D002230 ORTHO05D002441 2.9e-06 56.6 88 38.6
PSO297G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 5.0e-06 55.8 72 37.5
PSO413G0001 Papaver somniferum HOM05D002230 ORTHO05D002441 5.0e-06 55.8 72 37.5
PSO421G0277 Papaver somniferum HOM05D002230 ORTHO05D002441 5.0e-06 55.8 72 37.5
Sp7g16520 Schrenkiella parvula HOM05D002230 ORTHO05D002441 6.6e-06 55.5 71 40.8
Thhalv10006612m.g Eutrema salsugineum HOM05D002230 ORTHO05D002441 8.6e-06 55.1 84 35.7
SMO358G0014 Selaginella moellendorffii HOM05D002230 ORTHO05D002441 8.6e-06 55.1 84 34.5


User provided reference genes

Program Settings