Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17056 Brassica carinata HOM05D004428 ORTHO05D006381 2.0e-175 619.0 309 100.0
A06p03530 Brassica napus HOM05D004428 ORTHO05D006381 3.2e-125 452.2 337 72.4
BraA06t23561Z Brassica rapa HOM05D004428 ORTHO05D006381 3.2e-125 452.2 337 72.4
Sp1g36710 Schrenkiella parvula HOM05D004428 ORTHO05D006381 4.6e-124 448.4 337 71.5
C06p04650 Brassica napus HOM05D004428 ORTHO05D006381 6.0e-124 448.0 337 72.1
BolC6t35594H Brassica oleracea HOM05D004428 ORTHO05D006381 5.1e-123 444.9 337 72.1
BcaB02g11109 Brassica carinata HOM05D004428 ORTHO05D006381 2.5e-122 442.6 337 70.6
Thhalv10011257m.g Eutrema salsugineum HOM05D004428 ORTHO05D006381 7.3e-122 441.0 337 70.9
CARHR292410 Cardamine hirsuta HOM05D004428 ORTHO05D006381 3.0e-115 419.1 331 68.9
Carub.0001s3423 Capsella rubella HOM05D004428 ORTHO05D006381 6.6e-115 417.9 338 67.5
A05p20450 Brassica napus HOM05D004428 ORTHO05D006381 3.3e-114 415.6 345 67.0
BraA05t20951Z Brassica rapa HOM05D004428 ORTHO05D006381 7.3e-114 414.5 346 67.1
BcaNung07321 Brassica carinata HOM05D004428 ORTHO05D006381 1.6e-113 413.3 320 72.2
AT1G42440 Arabidopsis thaliana HOM05D004428 ORTHO05D006381 6.2e-113 411.4 338 66.6
BcaC05g27470 Brassica carinata HOM05D004428 ORTHO05D006381 1.8e-112 409.8 345 67.0
BolC5t32163H Brassica oleracea HOM05D004428 ORTHO05D006381 1.8e-112 409.8 345 67.0
C05p34310 Brassica napus HOM05D004428 ORTHO05D006381 5.3e-112 408.3 345 66.7
AL2G22150 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 3.8e-110 402.1 337 66.5
Aa31LG5G19860 Aethionema arabicum HOM05D004428 ORTHO05D006381 9.6e-106 387.5 343 62.1
THA.LOC104806921 Tarenaya hassleriana HOM05D004428 ORTHO05D006381 1.3e-105 387.1 342 62.0
AL1G51320 Arabidopsis lyrata HOM05D004428 ORTHO05D006381 3.4e-103 379.0 328 64.0
QL08p042264 Quercus lobata HOM05D004428 ORTHO05D006381 1.6e-97 360.1 337 57.3
COL.COLO4_04008 Corchorus olitorius HOM05D004428 ORTHO05D006381 1.4e-96 357.1 341 56.3
Gorai.002G117400 Gossypium raimondii HOM05D004428 ORTHO05D006381 1.8e-96 356.7 341 56.0
Gohir.D01G092200 Gossypium hirsutum HOM05D004428 ORTHO05D006381 6.9e-96 354.8 341 55.7
Aqoxy5G01044 Aquilegia oxysepala HOM05D004428 ORTHO05D006381 9.0e-96 354.4 337 55.8
Cfa014074 Carpinus fangiana HOM05D004428 ORTHO05D006381 1.2e-95 354.0 342 56.7
Gorai.002G117200 Gossypium raimondii HOM05D004428 ORTHO05D006381 2.6e-95 352.8 341 55.7
Sabra05G0193700 Salix brachista HOM05D004428 ORTHO05D006381 4.5e-95 352.1 342 55.6
Potri.005G250100 Populus trichocarpa HOM05D004428 ORTHO05D006381 7.6e-95 351.3 342 55.6
FvH4_5g12620 Fragaria vesca HOM05D004428 ORTHO05D006381 1.7e-94 350.1 342 56.4
FAN18G3186 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.7e-94 350.1 342 56.4
Gohir.D01G092100 Gossypium hirsutum HOM05D004428 ORTHO05D006381 2.2e-94 349.7 341 55.4
Nn5g30938 Nelumbo nucifera HOM05D004428 ORTHO05D006381 2.9e-94 349.4 338 55.6
RcHm_v2.0_Chr7g0184701 Rosa chinensis HOM05D004428 ORTHO05D006381 3.8e-94 349.0 342 55.8
CiPaw.07G139000 Carya illinoinensis HOM05D004428 ORTHO05D006381 5.0e-94 348.6 341 55.1
Gohir.A01G105900 Gossypium hirsutum HOM05D004428 ORTHO05D006381 5.0e-94 348.6 341 55.4
Thecc.08G058600 Theobroma cacao HOM05D004428 ORTHO05D006381 5.0e-94 348.6 341 55.1
FAN13G0888 Fragaria x ananassa HOM05D004428 ORTHO05D006381 1.1e-93 347.4 342 56.1
Gohir.A01G105800 Gossypium hirsutum HOM05D004428 ORTHO05D006381 1.1e-93 347.4 341 55.4
Eucgr.E02846 Eucalyptus grandis HOM05D004428 ORTHO05D006381 1.4e-93 347.1 342 53.8
CANSAT56G2267 Cannabis sativa HOM05D004428 ORTHO05D006381 1.9e-93 346.7 342 55.6
Atru.chr13.133 Acer truncatum HOM05D004428 ORTHO05D006381 3.2e-93 345.9 337 55.2
Ciclev10000330m.g Citrus clementina HOM05D004428 ORTHO05D006381 5.5e-93 345.1 337 55.5
TAR381G0098 Trochodendron aralioides HOM05D004428 ORTHO05D006381 5.5e-93 345.1 338 56.5
TWI12G0814 Tripterygium wilfordii HOM05D004428 ORTHO05D006381 1.2e-92 344.0 342 54.4
CSS0024308 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 2.7e-92 342.8 337 54.6
FAN04G3173 Fragaria x ananassa HOM05D004428 ORTHO05D006381 2.7e-92 342.8 342 55.6
Cc10_g00690 Coffea canephora HOM05D004428 ORTHO05D006381 3.5e-92 342.4 337 54.9
CSS0033739 Camellia sinensis var. sinensis HOM05D004428 ORTHO05D006381 1.0e-91 340.9 342 54.1
Hund05114 Selenicereus undatus HOM05D004428 ORTHO05D006381 3.0e-91 339.3 342 53.5
TAR625G0496 Trochodendron aralioides HOM05D004428 ORTHO05D006381 3.0e-91 339.3 338 55.3
Actinidia15489 Actinidia chinensis HOM05D004428 ORTHO05D006381 5.1e-91 338.6 337 53.7
FAN08G2755 Fragaria x ananassa HOM05D004428 ORTHO05D006381 6.7e-91 338.2 363 53.2
FAN18G0222 Fragaria x ananassa HOM05D004428 ORTHO05D006381 8.7e-91 337.8 363 53.2
Prupe.5G218100 Prunus persica HOM05D004428 ORTHO05D006381 8.7e-91 337.8 343 54.2
Solyc04g082330.3 Solanum lycopersicum HOM05D004428 ORTHO05D006381 1.9e-90 336.7 337 54.3
GSVIVG01013363001 Vitis vinifera HOM05D004428 ORTHO05D006381 2.5e-90 336.3 343 53.1
MD06G1211900 Malus domestica HOM05D004428 ORTHO05D006381 5.7e-90 335.1 343 53.9
PGSC0003DMG400009978 Solanum tuberosum HOM05D004428 ORTHO05D006381 5.7e-90 335.1 337 54.0
Sopen04g035950 Solanum pennellii HOM05D004428 ORTHO05D006381 7.4e-90 334.7 337 54.0
vmacro21813 Vaccinium macrocarpon HOM05D004428 ORTHO05D006381 1.3e-89 334.0 340 53.8
MSTRG.4456 Avicennia marina HOM05D004428 ORTHO05D006381 2.2e-89 333.2 342 53.8
Nitab4.5_0000588g0120 Nicotiana tabacum HOM05D004428 ORTHO05D006381 2.8e-89 332.8 337 53.4
PGR083G1674 Punica granatum HOM05D004428 ORTHO05D006381 2.8e-89 332.8 342 52.0
Rhsim06G0007600 Rhododendron simsii HOM05D004428 ORTHO05D006381 2.8e-89 332.8 342 54.1
CAN.G311.114 Capsicum annuum HOM05D004428 ORTHO05D006381 3.7e-89 332.4 337 53.1
MBI08_g41523_MAGBIO Magnolia biondii HOM05D004428 ORTHO05D006381 4.8e-89 332.0 343 54.5
MD14G1222500 Malus domestica HOM05D004428 ORTHO05D006381 4.8e-89 332.0 343 53.4
ATR0796G321 Amborella trichopoda HOM05D004428 ORTHO05D006381 1.4e-88 330.5 339 51.9
HanXRQChr06g0184011 Helianthus annuus HOM05D004428 ORTHO05D006381 4.1e-88 328.9 337 54.0
SalBow7G1176 Salvia bowleyana HOM05D004428 ORTHO05D006381 1.2e-87 327.4 338 54.4
Sc15g0004460 Simmondsia chinensis HOM05D004428 ORTHO05D006381 1.2e-87 327.4 343 52.2
Manes.18G005500 Manihot esculenta HOM05D004428 ORTHO05D006381 2.0e-87 326.6 333 54.1
Peaxi162Scf00893g00431 Petunia axillaris HOM05D004428 ORTHO05D006381 3.4e-87 325.9 337 52.5
HanXRQChr14g0428331 Helianthus annuus HOM05D004428 ORTHO05D006381 1.0e-86 324.3 337 53.1
SGA_v2.0_scaffold108G30858 Striga asiatica HOM05D004428 ORTHO05D006381 1.0e-86 324.3 342 53.2
ECA238G2671 Erigeron canadensis HOM05D004428 ORTHO05D006381 1.3e-86 323.9 337 52.8
Ah.14g084500 Amaranthus hybridus HOM05D004428 ORTHO05D006381 2.2e-86 323.2 337 53.4
Actinidia17038 Actinidia chinensis HOM05D004428 ORTHO05D006381 1.4e-85 320.5 333 52.6
AUR62036878 Chenopodium quinoa HOM05D004428 ORTHO05D006381 1.4e-85 320.5 337 51.9
Lsat_1_v5_gn_2_5041 Lactuca sativa HOM05D004428 ORTHO05D006381 1.9e-85 320.1 342 52.0
EL10Ac1g01970 Beta vulgaris HOM05D004428 ORTHO05D006381 1.2e-84 317.4 337 51.3
VMungo1309G3122 Vigna mungo HOM05D004428 ORTHO05D006381 2.1e-84 316.6 342 50.9
arahy.Tifrunner.gnm1.ann1.ZHV6CG Arachis hypogaea HOM05D004428 ORTHO05D006381 2.7e-84 316.2 337 51.3
EL10Ac2g02835 Beta vulgaris HOM05D004428 ORTHO05D006381 2.7e-84 316.2 337 51.3
ClCG06G001320 Citrullus lanatus HOM05D004428 ORTHO05D006381 2.7e-84 316.2 339 53.1
Lj1g0006576 Lotus japonicus HOM05D004428 ORTHO05D006381 2.7e-84 316.2 337 51.6
arahy.Tifrunner.gnm1.ann1.W2TUZB Arachis hypogaea HOM05D004428 ORTHO05D006381 3.6e-84 315.8 337 51.3
Migut.C00959 Erythranthe guttata HOM05D004428 ORTHO05D006381 3.6e-84 315.8 343 51.3
Sed0021929 Sechium edule HOM05D004428 ORTHO05D006381 3.6e-84 315.8 356 50.8
Lalb_Chr11g0061651 Lupinus albus HOM05D004428 ORTHO05D006381 6.1e-84 315.1 337 50.4
Glyma.04G018100 Glycine max HOM05D004428 ORTHO05D006381 2.3e-83 313.2 337 50.4
Glyma.06G018400 Glycine max HOM05D004428 ORTHO05D006381 3.9e-83 312.4 337 50.4
Medtr3g115250 Medicago truncatula HOM05D004428 ORTHO05D006381 5.1e-83 312.0 337 50.4
unitig_22.g5423 Utricularia gibba HOM05D004428 ORTHO05D006381 5.1e-83 312.0 342 50.9
Psat5g158960 Pisum sativum HOM05D004428 ORTHO05D006381 6.7e-83 311.6 337 50.4
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 8.8e-83 311.2 331 53.5
PSO210G2012 Papaver somniferum HOM05D004428 ORTHO05D006381 2.5e-82 309.7 342 50.3
MELO3C022402.2 Cucumis melo HOM05D004428 ORTHO05D006381 5.7e-82 308.5 343 51.0
CDE05G2560 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 1.7e-81 307.0 345 50.4
Ca_15435_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.8e-81 305.4 337 49.3
Ca_15460_v3 Cicer arietinum L. HOM05D004428 ORTHO05D006381 4.8e-81 305.4 337 49.3
CsaV3_6G007250 Cucumis sativus L. HOM05D004428 ORTHO05D006381 6.3e-81 305.1 347 51.0
Phvul.009G010600 Phaseolus vulgaris HOM05D004428 ORTHO05D006381 8.2e-81 304.7 342 49.1
Os11g0298400 Oryza sativa ssp. japonica HOM05D004428 ORTHO05D006381 1.4e-80 303.9 340 50.0
PSO170G5451 Papaver somniferum HOM05D004428 ORTHO05D006381 2.4e-80 303.1 342 49.7
Oeu000690.4 Olea europaea HOM05D004428 ORTHO05D006381 1.0e-78 297.7 395 45.3
TPR.G33901 Trifolium pratense HOM05D004428 ORTHO05D006381 3.8e-78 295.8 349 48.7
Zm00001eb266050 Zea mays HOM05D004428 ORTHO05D006381 6.5e-78 295.0 340 48.8
Medtr7g029115 Medicago truncatula HOM05D004428 ORTHO05D006381 8.5e-78 294.7 337 48.7
Lj6C24T17 Lonicera japonica HOM05D004428 ORTHO05D006381 1.1e-77 294.3 342 49.4
AUR62043175 Chenopodium quinoa HOM05D004428 ORTHO05D006381 5.5e-77 292.0 376 45.5
Pp3c2_14060 Physcomitrium patens HOM05D004428 ORTHO05D006381 1.5e-74 283.9 338 45.6
Haze_22769 Corylus avellana HOM05D004428 ORTHO05D006381 2.8e-73 279.6 321 50.2
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 2.4e-72 276.6 337 45.7
PSO170G1451 Papaver somniferum HOM05D004428 ORTHO05D006381 2.2e-70 270.0 342 44.4
Mapoly0119s0018 Marchantia polymorpha HOM05D004428 ORTHO05D006381 1.2e-68 264.2 342 42.7
PSO339G3255 Papaver somniferum HOM05D004428 ORTHO05D006381 2.7e-68 263.1 334 45.8
SHI13858 Sapria himalayana HOM05D004428 ORTHO05D006381 4.1e-64 249.2 251 50.6
COL.COLO4_23022 Corchorus olitorius HOM05D004428 ORTHO05D006381 2.0e-63 246.9 300 48.7
Cpa.g.sc26.200 Carica papaya HOM05D004428 ORTHO05D006381 3.5e-63 246.1 285 50.9
SMO307G0074 Selaginella moellendorffii HOM05D004428 ORTHO05D006381 2.9e-62 243.0 341 42.8
CDE05G2974 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 6.5e-62 241.9 347 43.8
PSO384G1617 Papaver somniferum HOM05D004428 ORTHO05D006381 4.2e-61 239.2 309 45.0
PSO170G2196 Papaver somniferum HOM05D004428 ORTHO05D006381 1.0e-59 234.6 309 44.0
Dinv31938 Davidia involucrata HOM05D004428 ORTHO05D006381 4.8e-57 225.7 285 48.4
CBR_g46902 Chara braunii HOM05D004428 ORTHO05D006381 1.4e-56 224.2 369 39.0
Duzib116G0794 Durio zibethinus HOM05D004428 ORTHO05D006381 3.1e-56 223.0 343 40.5
HPP92_013006 Vanilla planifolia HOM05D004428 ORTHO05D006381 5.9e-55 218.8 294 45.2
Cre16.g673700 Chlamydomonas reinhardtii HOM05D004428 ORTHO05D006381 2.3e-51 206.8 324 38.0
Glyma.20G030400 Glycine max HOM05D004428 ORTHO05D035991 2.1e-44 183.7 193 51.3
AagrBONN_evm.TU.Sc2ySwM_344.4958 Anthoceros agrestis HOM05D004428 ORTHO05D006381 2.0e-42 177.2 349 34.4
MCO01G609 Micromonas commoda HOM05D004428 ORTHO05D006381 3.2e-40 169.9 313 35.5
PRCOL_00005736 Prasinoderma coloniale HOM05D004428 ORTHO05D006381 1.3e-33 147.9 280 34.6
CDE05G2001 Ceratophyllum demersum HOM05D004428 ORTHO05D006381 4.7e-28 129.4 197 42.1
Cfa025316 Carpinus fangiana HOM05D004428 ORTHO05D006381 1.7e-22 110.9 357 26.6
TPR.G38192 Trifolium pratense HOM05D004428 ORTHO05D048467 4.3e-21 106.3 94 56.4
Oeu007483.1 Olea europaea HOM05D004428 ORTHO05D006381 1.3e-17 94.7 43 88.4
Zm00001eb107630 Zea mays HOM05D004428 ORTHO05D035991 2.4e-16 90.5 134 42.5
DCAR_016805 Daucus carota HOM05D004428 ORTHO05D006381 1.6e-15 87.8 122 43.4
Zm00001eb287390 Zea mays HOM05D004428 ORTHO05D035991 8.6e-14 82.0 75 57.3
Lj2g0023471 Lotus japonicus HOM05D004428 ORTHO05D048467 1.0e-06 58.5 53 52.8
Atru.chr4.1347 Acer truncatum HOM05D002230 ORTHO05D002441 3.9e-06 56.6 221 24.0
Os03g0333100 Oryza sativa ssp. japonica HOM05D002230 ORTHO05D002441 8.7e-06 55.5 288 22.6
Zm00001eb044510 Zea mays HOM05D004428 ORTHO05D445129 8.7e-06 55.5 91 39.6


User provided reference genes

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