Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16861 Brassica carinata HOM05D000001 ORTHO05D000424 1.4e-37 159.1 77 100.0
Sp3g33920 Schrenkiella parvula HOM05D000001 ORTHO05D000424 1.6e-22 109.0 57 91.2
Aa31LG8G17570 Aethionema arabicum HOM05D000001 ORTHO05D000424 3.7e-22 107.8 57 89.5
AL3G53770 Arabidopsis lyrata HOM05D000001 ORTHO05D000424 4.8e-22 107.5 57 87.7
AT2G20680 Arabidopsis thaliana HOM05D000001 ORTHO05D000424 4.8e-22 107.5 57 87.7
THA.LOC104814504 Tarenaya hassleriana HOM05D000001 ORTHO05D000424 4.8e-22 107.5 57 87.7
CARHR111320 Cardamine hirsuta HOM05D000001 ORTHO05D000424 6.3e-22 107.1 57 87.7
BcaC06g36759 Brassica carinata HOM05D000001 ORTHO05D000424 8.2e-22 106.7 57 89.5
C07p00230 Brassica napus HOM05D000001 ORTHO05D000424 8.2e-22 106.7 57 89.5
BolC7t40473H Brassica oleracea HOM05D000001 ORTHO05D000424 8.2e-22 106.7 57 89.5
A07p00080 Brassica napus HOM05D000001 ORTHO05D000424 1.1e-21 106.3 57 87.7
BraA07t27799Z Brassica rapa HOM05D000001 ORTHO05D000424 1.1e-21 106.3 57 87.7
BcaB08g34937 Brassica carinata HOM05D000001 ORTHO05D000424 1.4e-21 105.9 57 86.0
Thhalv10001990m.g Eutrema salsugineum HOM05D000001 ORTHO05D000424 1.8e-21 105.5 57 87.7
BcaC07g41197 Brassica carinata HOM05D000001 ORTHO05D000424 3.1e-21 104.8 57 86.0
C08p42050 Brassica napus HOM05D000001 ORTHO05D000424 3.1e-21 104.8 57 86.0
BolC8t51767H Brassica oleracea HOM05D000001 ORTHO05D000424 3.1e-21 104.8 57 86.0
A09p58750 Brassica napus HOM05D000001 ORTHO05D000424 4.1e-21 104.4 57 84.2
Carub.0003s3519 Capsella rubella HOM05D000001 ORTHO05D000424 4.1e-21 104.4 57 82.5
BraA09t41261Z Brassica rapa HOM05D000001 ORTHO05D000424 1.2e-20 102.8 57 84.2
THA.LOC104804062 Tarenaya hassleriana HOM05D000001 ORTHO05D000424 1.5e-20 102.4 58 82.8
QL08p038970 Quercus lobata HOM05D000001 ORTHO05D000424 4.5e-20 100.9 57 78.9
Aa31LG2G22180 Aethionema arabicum HOM05D000001 ORTHO05D000424 5.9e-20 100.5 57 84.2
AL7G24280 Arabidopsis lyrata HOM05D000001 ORTHO05D000424 1.3e-19 99.4 57 82.5
BcaC09g50491 Brassica carinata HOM05D000001 ORTHO05D000424 1.7e-19 99.0 57 82.5
A01p19740 Brassica napus HOM05D000001 ORTHO05D000424 1.7e-19 99.0 57 82.5
C01p24800 Brassica napus HOM05D000001 ORTHO05D000424 1.7e-19 99.0 57 82.5
BolC1t02427H Brassica oleracea HOM05D000001 ORTHO05D000424 1.7e-19 99.0 57 82.5
BraA01t01905Z Brassica rapa HOM05D000001 ORTHO05D000424 1.7e-19 99.0 57 82.5
BcaNung01576 Brassica carinata HOM05D000001 ORTHO05D000424 2.9e-19 98.2 57 80.7
Carub.0007s1243 Capsella rubella HOM05D000001 ORTHO05D000424 5.0e-19 97.4 57 80.7
AT4G28320 Arabidopsis thaliana HOM05D000001 ORTHO05D000424 6.5e-19 97.1 57 82.5
Haze_13170 Corylus avellana HOM05D000001 ORTHO05D000424 8.5e-19 96.7 57 75.4
Thhalv10025261m.g Eutrema salsugineum HOM05D000001 ORTHO05D000424 8.5e-19 96.7 57 78.9
CARHR236020 Cardamine hirsuta HOM05D000001 ORTHO05D000424 1.1e-18 96.3 57 78.9
CiPaw.04G126400 Carya illinoinensis HOM05D000001 ORTHO05D000424 1.1e-18 96.3 57 75.4
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.1e-18 96.3 57 77.2
Sabra13G0109800 Salix brachista HOM05D000001 ORTHO05D011115 1.1e-18 96.3 57 77.2
Potri.013G130400 Populus trichocarpa HOM05D000001 ORTHO05D000424 2.5e-18 95.1 57 75.4
Sp7g26280 Schrenkiella parvula HOM05D000001 ORTHO05D000424 3.2e-18 94.7 57 78.9
CSS0006786 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000424 4.2e-18 94.4 57 73.7
CsaV3_6G012900 Cucumis sativus L. HOM05D000001 ORTHO05D000424 4.2e-18 94.4 57 73.7
Actinidia30470 Actinidia chinensis HOM05D000001 ORTHO05D000424 5.5e-18 94.0 56 73.2
Actinidia39319 Actinidia chinensis HOM05D000001 ORTHO05D000424 5.5e-18 94.0 56 73.2
Cfa014620 Carpinus fangiana HOM05D000001 ORTHO05D000424 5.5e-18 94.0 57 73.7
Sabra13G0108300 Salix brachista HOM05D000001 ORTHO05D000424 7.2e-18 93.6 57 75.4
CSS0021245 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000424 9.3e-18 93.2 57 71.9
COL.COLO4_30201 Corchorus olitorius HOM05D000001 ORTHO05D000424 9.3e-18 93.2 53 83.0
MELO3C013622.2 Cucumis melo HOM05D000001 ORTHO05D000424 1.2e-17 92.8 57 73.7
Hma1.2p1_0002F.1_g001900 Hydrangea macrophylla HOM05D000001 ORTHO05D000424 1.6e-17 92.4 53 79.2
Rhsim04G0068700 Rhododendron simsii HOM05D000001 ORTHO05D000424 1.6e-17 92.4 56 73.2
Atru.chr6.2989 Acer truncatum HOM05D000001 ORTHO05D000424 2.1e-17 92.0 57 71.9
Cpa.g.sc34.173 Carica papaya HOM05D000001 ORTHO05D000424 2.1e-17 92.0 52 80.8
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 2.7e-17 91.7 52 75.0
Oeu030710.1 Olea europaea HOM05D000001 ORTHO05D000424 2.7e-17 91.7 57 70.2
ClCG02G017650 Citrullus lanatus HOM05D000001 ORTHO05D000424 3.6e-17 91.3 57 70.2
Nitab4.5_0000585g0160 Nicotiana tabacum HOM05D000001 ORTHO05D000424 4.6e-17 90.9 57 68.4
Manes.12G089180 Manihot esculenta HOM05D000001 ORTHO05D000424 6.1e-17 90.5 57 70.2
PGR142G0904 Punica granatum HOM05D000001 ORTHO05D000424 6.1e-17 90.5 52 76.9
Solyc10g008300.3 Solanum lycopersicum HOM05D000001 ORTHO05D000424 6.1e-17 90.5 57 68.4
PGSC0003DMG400013146 Solanum tuberosum HOM05D000001 ORTHO05D000424 6.1e-17 90.5 57 68.4
Nitab4.5_0000638g0200 Nicotiana tabacum HOM05D000001 ORTHO05D000424 7.9e-17 90.1 57 71.9
Nitab4.5_0011031g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000424 7.9e-17 90.1 57 71.9
Peaxi162Scf00059g01813 Petunia axillaris HOM05D000001 ORTHO05D000424 7.9e-17 90.1 57 66.7
Oeu052533.1 Olea europaea HOM05D000001 ORTHO05D000424 1.0e-16 89.7 57 70.2
CiPaw.03G177900 Carya illinoinensis HOM05D000001 ORTHO05D000424 1.3e-16 89.4 52 76.9
Lsat_1_v5_gn_4_66660 Lactuca sativa HOM05D000001 ORTHO05D000424 1.3e-16 89.4 53 75.5
Solyc07g053920.3 Solanum lycopersicum HOM05D000001 ORTHO05D000424 1.3e-16 89.4 57 71.9
Sopen07g027900 Solanum pennellii HOM05D000001 ORTHO05D000424 1.3e-16 89.4 57 71.9
Sopen10g004160 Solanum pennellii HOM05D000001 ORTHO05D000424 1.3e-16 89.4 57 66.7
Ciclev10015394m.g Citrus clementina HOM05D000001 ORTHO05D000424 1.8e-16 89.0 57 73.7
Sed0021937 Sechium edule HOM05D000001 ORTHO05D000424 1.8e-16 89.0 57 71.9
CAN.G1327.5 Capsicum annuum HOM05D000001 ORTHO05D000424 2.3e-16 88.6 57 71.9
PGSC0003DMG400018338 Solanum tuberosum HOM05D000001 ORTHO05D000424 2.3e-16 88.6 57 71.9
Duzib248G0093 Durio zibethinus HOM05D000001 ORTHO05D000424 3.0e-16 88.2 51 78.4
Sed0011303 Sechium edule HOM05D000001 ORTHO05D000424 3.0e-16 88.2 57 64.9
SGA_v2.0_scaffold70G23525 Striga asiatica HOM05D000001 ORTHO05D000424 3.0e-16 88.2 57 68.4
Thecc.02G180500 Theobroma cacao HOM05D000001 ORTHO05D000424 3.0e-16 88.2 53 75.5
MD09G1246900 Malus domestica HOM05D000001 ORTHO05D000424 3.9e-16 87.8 57 68.4
TAR627G0917 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.9e-16 87.8 62 67.7
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.9e-16 87.8 52 71.2
CAN.G578.6 Capsicum annuum HOM05D000001 ORTHO05D000424 5.1e-16 87.4 57 66.7
Dinv23631 Davidia involucrata HOM05D000001 ORTHO05D000424 5.1e-16 87.4 59 69.5
Prupe.3G132400 Prunus persica HOM05D000001 ORTHO05D000424 5.1e-16 87.4 62 69.4
Lj1C721T2 Lonicera japonica HOM05D000001 ORTHO05D000424 6.7e-16 87.0 53 71.7
Duzib132G0747 Durio zibethinus HOM05D000001 ORTHO05D000424 8.7e-16 86.7 51 76.5
Lj8A111T53 Lonicera japonica HOM05D000001 ORTHO05D000424 8.7e-16 86.7 53 69.8
Peaxi162Scf00132g00018 Petunia axillaris HOM05D000001 ORTHO05D000424 8.7e-16 86.7 57 70.2
ECA248G0360 Erigeron canadensis HOM05D000001 ORTHO05D000424 1.1e-15 86.3 53 71.7
Gorai.013G075700 Gossypium raimondii HOM05D000001 ORTHO05D000424 1.1e-15 86.3 51 76.5
HanXRQChr17g0555121 Helianthus annuus HOM05D000001 ORTHO05D000424 1.1e-15 86.3 53 69.8
MD17G1239800 Malus domestica HOM05D000001 ORTHO05D000424 1.1e-15 86.3 57 68.4
HanXRQChr08g0215831 Helianthus annuus HOM05D000001 ORTHO05D000424 1.5e-15 85.9 53 71.7
Cc05_g07220 Coffea canephora HOM05D000001 ORTHO05D000424 1.9e-15 85.5 57 70.2
Gohir.A13G055601 Gossypium hirsutum HOM05D000001 ORTHO05D000424 1.9e-15 85.5 51 76.5
Oeu017965.1 Olea europaea HOM05D000001 ORTHO05D000424 1.9e-15 85.5 57 68.4
TWI75G0196 Tripterygium wilfordii HOM05D000001 ORTHO05D000424 2.5e-15 85.1 62 64.5
DCAR_013014 Daucus carota HOM05D000001 ORTHO05D000424 3.3e-15 84.7 53 69.8
Gohir.D13G066400 Gossypium hirsutum HOM05D000001 ORTHO05D000424 3.3e-15 84.7 51 74.5
vmacro09285 Vaccinium macrocarpon HOM05D000001 ORTHO05D000424 3.3e-15 84.7 56 67.9
CSS0020933 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000424 4.3e-15 84.3 56 64.3
DCAR_009749 Daucus carota HOM05D000001 ORTHO05D000424 5.7e-15 84.0 53 67.9
Manes.13G146200 Manihot esculenta HOM05D000001 ORTHO05D000424 5.7e-15 84.0 57 68.4
Duzib052G0985 Durio zibethinus HOM05D000001 ORTHO05D000424 7.4e-15 83.6 51 72.5
Migut.M00295 Erythranthe guttata HOM05D000001 ORTHO05D000424 7.4e-15 83.6 57 64.9
Oeu049078.1 Olea europaea HOM05D000001 ORTHO05D000424 7.4e-15 83.6 57 61.4
Rhsim06G0141700 Rhododendron simsii HOM05D000001 ORTHO05D000424 9.7e-15 83.2 62 61.3
Hma1.2p1_0981F.1_g243700 Hydrangea macrophylla HOM05D000001 ORTHO05D000424 1.3e-14 82.8 53 66.0
TWI36G0086 Tripterygium wilfordii HOM05D000001 ORTHO05D000424 1.3e-14 82.8 62 62.9
SHI10397 Sapria himalayana HOM05D000001 ORTHO05D000424 1.6e-14 82.4 54 68.5
GSVIVG01020553001 Vitis vinifera HOM05D000001 ORTHO05D000424 2.2e-14 82.0 62 62.9
Aqoxy1G02418 Aquilegia oxysepala HOM05D000001 ORTHO05D000424 2.8e-14 81.6 55 69.1
Oeu007127.2 Olea europaea HOM05D000001 ORTHO05D000424 2.8e-14 81.6 57 61.4
MSTRG.6794 Avicennia marina HOM05D000001 ORTHO05D000424 3.7e-14 81.3 57 64.9
MBI06_g04173_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000424 3.7e-14 81.3 55 61.8
Eucgr.K01032 Eucalyptus grandis HOM05D000001 ORTHO05D000424 4.8e-14 80.9 51 64.7
Gohir.A03G156200 Gossypium hirsutum HOM05D000001 ORTHO05D000424 4.8e-14 80.9 53 71.7
Gohir.D02G179300 Gossypium hirsutum HOM05D000001 ORTHO05D000424 4.8e-14 80.9 53 71.7
Gorai.005G201100 Gossypium raimondii HOM05D000001 ORTHO05D000424 4.8e-14 80.9 53 71.7
BcaNung01580 Brassica carinata HOM05D000001 ORTHO05D000424 1.1e-13 79.7 49 73.5
unitig_699.g19602 Utricularia gibba HOM05D000001 ORTHO05D000424 1.1e-13 79.7 57 59.6
ATR0737G044 Amborella trichopoda HOM05D000001 ORTHO05D000424 1.4e-13 79.3 55 63.6
CDE09G1292 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.8e-13 79.0 55 61.8
AUR62037332 Chenopodium quinoa HOM05D000001 ORTHO05D000424 3.1e-13 78.2 50 64.0
AUR62044436 Chenopodium quinoa HOM05D000001 ORTHO05D000424 3.1e-13 78.2 50 64.0
DCAR_021246 Daucus carota HOM05D000001 ORTHO05D000424 3.1e-13 78.2 53 62.3
EL10Ac3g06644 Beta vulgaris HOM05D000001 ORTHO05D000424 4.1e-13 77.8 50 62.0
EL10Ac9g20771 Beta vulgaris HOM05D000001 ORTHO05D000424 4.1e-13 77.8 50 62.0
Eucgr.A01823 Eucalyptus grandis HOM05D000001 ORTHO05D000424 4.1e-13 77.8 60 61.7
Phvul.004G108000 Phaseolus vulgaris HOM05D000001 ORTHO05D000424 5.3e-13 77.4 55 63.6
Glyma.13G296600 Glycine max HOM05D000001 ORTHO05D000424 1.2e-12 76.3 57 59.6
VMungo0464G1381 Vigna mungo HOM05D000001 ORTHO05D000424 2.0e-12 75.5 57 59.6
PGR042G1944 Punica granatum HOM05D000001 ORTHO05D000424 3.4e-12 74.7 50 66.0
Ah.01g004210 Amaranthus hybridus HOM05D000001 ORTHO05D000424 4.5e-12 74.3 50 64.0
Glyma.12G204700 Glycine max HOM05D000001 ORTHO05D000424 4.5e-12 74.3 57 57.9
FAN05G1973 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.7e-11 72.4 59 55.9
PSO832G0987 Papaver somniferum HOM05D000001 ORTHO05D000424 1.7e-11 72.4 50 66.0
Hund01083 Selenicereus undatus HOM05D000001 ORTHO05D000424 2.2e-11 72.0 55 56.4
TPR.G6472 Trifolium pratense HOM05D000001 ORTHO05D000424 2.2e-11 72.0 57 61.4
RcHm_v2.0_Chr2g0126631 Rosa chinensis HOM05D000001 ORTHO05D000424 3.8e-11 71.2 57 59.6
arahy.Tifrunner.gnm1.ann1.8PAY7C Arachis hypogaea HOM05D000001 ORTHO05D000424 5.0e-11 70.9 57 56.1
Lalb_Chr03g0029481 Lupinus albus HOM05D000001 ORTHO05D000424 5.0e-11 70.9 57 56.1
MBI07_g30177_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000424 5.0e-11 70.9 55 50.9
arahy.Tifrunner.gnm1.ann1.CH6DAG Arachis hypogaea HOM05D000001 ORTHO05D000424 6.5e-11 70.5 57 56.1
Medtr2g090390 Medicago truncatula HOM05D000001 ORTHO05D000424 6.5e-11 70.5 57 56.1
Lj3g0004196 Lotus japonicus HOM05D000001 ORTHO05D000424 8.5e-11 70.1 57 57.9
FvH4_6g26240 Fragaria vesca HOM05D000001 ORTHO05D000424 1.1e-10 69.7 57 56.1
FAN09G3887 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.1e-10 69.7 57 56.1
FAN02G2882 Fragaria x ananassa HOM05D000001 ORTHO05D000424 1.4e-10 69.3 57 56.1
Sc21g0002900 Simmondsia chinensis HOM05D000001 ORTHO05D000424 1.9e-10 68.9 53 54.7
HPP92_024436 Vanilla planifolia HOM05D000001 ORTHO05D000424 2.5e-10 68.6 51 60.8
arahy.Tifrunner.gnm1.ann1.H0K04H Arachis hypogaea HOM05D000001 ORTHO05D000424 3.2e-10 68.2 57 52.6
arahy.Tifrunner.gnm1.ann1.5PF305 Arachis hypogaea HOM05D000001 ORTHO05D000424 4.2e-10 67.8 57 50.9
Lj1g0027581 Lotus japonicus HOM05D000001 ORTHO05D000424 4.2e-10 67.8 57 54.4
Lj3g0005160 Lotus japonicus HOM05D000001 ORTHO05D000424 4.2e-10 67.8 57 52.6
SEGI_11736 Sequoiadendron giganteum HOM05D000001 ORTHO05D000424 4.2e-10 67.8 50 60.0
SEGI_24496 Sequoiadendron giganteum HOM05D000001 ORTHO05D000424 4.2e-10 67.8 49 63.3
PSO541G3042 Papaver somniferum HOM05D000001 ORTHO05D000424 5.5e-10 67.4 55 52.7
PSO675G7836 Papaver somniferum HOM05D000001 ORTHO05D000424 5.5e-10 67.4 55 52.7
Phvul.011G118900 Phaseolus vulgaris HOM05D000001 ORTHO05D000424 5.5e-10 67.4 57 57.9
Psat0s2365g0080 Pisum sativum HOM05D000001 ORTHO05D000424 5.5e-10 67.4 59 57.6
Lalb_Chr14g0366981 Lupinus albus HOM05D000001 ORTHO05D000424 7.2e-10 67.0 57 52.6
VMungo1127G0941 Vigna mungo HOM05D000001 ORTHO05D000424 7.2e-10 67.0 55 60.0
Zm00001eb153010 Zea mays HOM05D000001 ORTHO05D000424 9.4e-10 66.6 50 64.0
Ca_01495_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000424 1.2e-09 66.2 57 52.6
Glyma.06G292400 Glycine max HOM05D000001 ORTHO05D000424 1.2e-09 66.2 57 57.9
Glyma.12G113400 Glycine max HOM05D000001 ORTHO05D000424 2.1e-09 65.5 57 56.1
TPR.G28024 Trifolium pratense HOM05D000001 ORTHO05D000424 2.1e-09 65.5 57 54.4
Lalb_Chr22g0356571 Lupinus albus HOM05D000001 ORTHO05D000424 2.7e-09 65.1 57 50.9
Ca_18947_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000424 1.8e-08 62.4 57 50.9
Medtr4g078230 Medicago truncatula HOM05D000001 ORTHO05D000424 3.0e-08 61.6 57 49.1
Os01g0746700 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000424 5.1e-08 60.8 50 54.0
SEGI_10299 Sequoiadendron giganteum HOM05D000001 ORTHO05D000424 5.1e-08 60.8 59 47.5
SEGI_36902 Sequoiadendron giganteum HOM05D000001 ORTHO05D000424 5.1e-08 60.8 59 47.5
Eucgr.E03950 Eucalyptus grandis HOM05D000001 ORTHO05D000424 6.7e-08 60.5 55 50.9
SGA_v2.0_scaffold12G06307 Striga asiatica HOM05D000001 ORTHO05D000003 7.4e-07 57.0 57 42.1
PGR042G0556 Punica granatum HOM05D000001 ORTHO05D000424 1.7e-06 55.8 55 50.9
PGR031G2673 Punica granatum HOM05D000001 ORTHO05D000424 2.2e-06 55.5 48 47.9
Medtr3g112060 Medicago truncatula HOM05D000001 ORTHO05D000424 4.8e-06 54.3 58 43.1
Pp3c6_22250 Physcomitrium patens HOM05D000001 ORTHO05D000424 8.2e-06 53.5 51 47.1


User provided reference genes

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