Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.6e-141 506.1 263 100.0
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 2.5e-131 472.2 260 93.8
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 3.6e-130 468.4 260 93.1
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.8e-130 468.0 260 93.8
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.4e-129 465.7 260 93.5
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.2e-127 459.1 260 91.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.0e-100 370.5 259 78.4
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 6.3e-98 361.3 260 78.1
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.9e-97 357.8 262 78.6
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 9.1e-97 357.5 262 77.9
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.7e-95 353.2 261 77.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.5e-91 340.1 273 71.1
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.2e-90 336.3 268 73.5
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.4e-81 306.2 269 66.9
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 5.0e-71 271.9 260 61.2
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.8e-63 245.7 272 54.8
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 2.1e-61 240.0 271 55.7
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.8e-61 239.6 273 55.7
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.3e-60 236.5 279 54.5
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.0e-60 235.7 273 53.8
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 5.2e-60 235.3 266 55.3
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.2e-59 234.2 264 53.0
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.2e-59 234.2 273 52.7
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.6e-59 233.0 273 53.5
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.2e-58 229.9 274 52.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 2.4e-57 226.5 273 52.7
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.1e-57 225.7 274 51.1
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.0e-57 224.9 271 52.8
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.0e-56 223.4 274 52.9
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 6.0e-56 221.9 262 53.4
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.0e-55 221.1 274 52.6
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.0e-55 221.1 276 51.8
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.3e-55 220.7 272 50.7
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.7e-55 220.3 274 50.7
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.7e-55 220.3 278 50.4
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 3.0e-55 219.5 272 54.8
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.0e-55 219.5 272 53.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.9e-55 219.2 271 53.1
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.9e-55 219.2 270 52.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 8.6e-55 218.0 272 50.7
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 8.6e-55 218.0 275 52.7
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 8.6e-55 218.0 273 50.9
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.5e-54 217.2 271 51.3
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.9e-54 216.9 276 51.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 4.3e-54 215.7 270 51.5
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.6e-54 215.3 276 52.9
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 7.3e-54 214.9 274 51.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 7.3e-54 214.9 269 50.2
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 9.5e-54 214.5 272 51.1
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 9.5e-54 214.5 274 51.8
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.6e-53 213.8 273 49.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.1e-53 213.4 273 50.2
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.8e-53 213.0 276 50.0
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.8e-53 213.0 273 49.8
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.7e-53 212.2 278 48.9
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.7e-53 212.2 274 52.2
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 6.2e-53 211.8 264 52.7
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 8.0e-53 211.5 274 49.6
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.1e-52 211.1 280 50.4
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.8e-52 210.3 269 49.4
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.1e-52 209.5 274 50.4
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.0e-52 209.1 271 50.2
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 5.2e-52 208.8 277 49.5
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 6.8e-52 208.4 268 49.3
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 6.8e-52 208.4 276 46.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.5e-51 207.2 269 49.4
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 2.0e-51 206.8 274 51.5
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 9.8e-51 204.5 271 48.0
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.3e-50 204.1 274 47.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.7e-50 203.8 267 47.9
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.9e-50 203.0 274 51.1
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.7e-50 202.6 270 52.2
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 6.4e-50 201.8 281 47.0
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 8.3e-50 201.4 273 50.9
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.4e-49 200.7 270 47.4
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 3.2e-49 199.5 263 48.7
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 4.1e-49 199.1 273 48.4
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-48 197.6 274 50.0
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 2.7e-48 196.4 276 47.5
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.5e-48 196.1 269 49.8
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 3.0e-47 193.0 271 45.0
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.9e-47 192.6 264 44.7
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 6.6e-47 191.8 272 47.4
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.1e-46 191.0 270 46.3
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.5e-46 189.9 245 51.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.5e-46 189.9 274 49.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 4.3e-46 189.1 271 45.8
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 5.6e-46 188.7 281 47.3
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 5.6e-46 188.7 263 47.9
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 5.6e-46 188.7 263 46.4
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 9.5e-46 188.0 276 45.7
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-45 187.2 276 48.2
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.8e-45 186.4 259 45.9
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.6e-45 186.0 267 44.9
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.2e-45 185.3 281 45.2
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-44 184.5 271 46.5
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 5.2e-44 182.2 266 48.1
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 6.8e-44 181.8 272 46.0
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-43 180.6 263 48.3
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-43 179.5 271 45.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.5e-43 178.3 244 50.4
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 7.5e-43 178.3 272 44.1
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 9.9e-43 177.9 271 44.3
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.3e-42 177.6 271 43.9
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 6.4e-42 175.3 261 46.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.9e-41 173.7 208 50.0
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 5.4e-41 172.2 268 44.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 3.5e-40 169.5 270 43.0
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 6.0e-40 168.7 269 45.4
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.0e-39 166.4 271 42.8
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 3.0e-39 166.4 255 42.4
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 8.6e-39 164.9 252 45.6
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.3e-34 151.0 268 39.2
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 8.4e-34 148.3 206 44.2
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 4.1e-33 146.0 145 51.7
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.6e-32 142.5 244 45.1
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-29 134.0 205 48.3
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-29 133.7 207 42.5
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-28 131.3 221 43.9
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-27 127.1 155 48.4
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-25 120.9 269 38.3
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 9.9e-19 98.2 151 47.7
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.1e-17 92.0 213 41.3
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-15 87.8 83 57.8
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.8e-15 87.4 142 46.5
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 6.7e-15 85.5 290 29.7
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 4.3e-14 82.8 149 45.0
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-12 78.2 135 45.2
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 6.0e-08 62.4 64 53.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-06 57.0 164 34.8
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.3e-06 56.6 86 46.5
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 5.6e-06 55.8 110 44.5


User provided reference genes

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