Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14998 Brassica carinata HOM05D000515 ORTHO05D005511 1.1e-130 469.9 229 100.0
BcaC06g32222 Brassica carinata HOM05D000515 ORTHO05D005511 1.7e-62 243.4 248 58.9
C09p71570 Brassica napus HOM05D000515 ORTHO05D005511 1.8e-61 240.0 247 57.5
BolC9t59918H Brassica oleracea HOM05D000515 ORTHO05D005511 2.7e-60 236.1 247 56.7
A10p31050 Brassica napus HOM05D000515 ORTHO05D005511 3.5e-60 235.7 247 56.3
Thhalv10012664m.g Eutrema salsugineum HOM05D000515 ORTHO05D005511 3.8e-59 232.3 247 55.1
Sp6g37710 Schrenkiella parvula HOM05D000515 ORTHO05D005511 9.4e-58 227.6 247 55.1
AT5G05130 Arabidopsis thaliana HOM05D000515 ORTHO05D005511 4.8e-54 215.3 247 52.6
AL6G14960 Arabidopsis lyrata HOM05D000515 ORTHO05D005511 9.1e-53 211.1 247 52.2
CARHR208140 Cardamine hirsuta HOM05D000515 ORTHO05D005511 9.1e-53 211.1 247 50.6
BraA10t45149Z Brassica rapa HOM05D000515 ORTHO05D005511 2.5e-50 203.0 247 51.8
THA.LOC104827449 Tarenaya hassleriana HOM05D000515 ORTHO05D005511 3.2e-45 186.0 248 48.0
Carub.0006s0406 Capsella rubella HOM05D000515 ORTHO05D005511 3.5e-44 182.6 247 47.4
BcaC09g50332 Brassica carinata HOM05D000515 ORTHO05D005511 1.1e-42 177.6 109 83.5
BcaC09g50334 Brassica carinata HOM05D000515 ORTHO05D005511 1.1e-42 177.6 109 83.5
Cpa.g.sc92.77 Carica papaya HOM05D000515 ORTHO05D005511 1.0e-40 171.0 244 45.9
Lj1A1086T48 Lonicera japonica HOM05D000515 ORTHO05D005511 5.2e-40 168.7 246 43.9
Haze_20252 Corylus avellana HOM05D000515 ORTHO05D005511 2.0e-39 166.8 246 45.9
Prupe.7G028900 Prunus persica HOM05D000515 ORTHO05D005511 3.4e-39 166.0 246 45.5
FAN18G0066 Fragaria x ananassa HOM05D000515 ORTHO05D005511 1.7e-38 163.7 247 44.1
FvH4_5g29290 Fragaria vesca HOM05D000515 ORTHO05D005511 2.9e-38 162.9 247 43.7
MD15G1139300 Malus domestica HOM05D000515 ORTHO05D005511 2.9e-38 162.9 252 44.0
vmacro08997 Vaccinium macrocarpon HOM05D000515 ORTHO05D005511 3.7e-38 162.5 244 42.6
Dinv08255 Davidia involucrata HOM05D000515 ORTHO05D005511 1.4e-37 160.6 252 41.3
CSS0006678 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D005511 1.9e-37 160.2 252 42.1
FAN08G2165 Fragaria x ananassa HOM05D000515 ORTHO05D005511 2.4e-37 159.8 247 43.7
CSS0034372 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D005511 3.2e-37 159.5 252 41.7
CiPaw.10G042400 Carya illinoinensis HOM05D000515 ORTHO05D005511 4.1e-37 159.1 252 42.9
Hma1.2p1_0254F.1_g103230 Hydrangea macrophylla HOM05D000515 ORTHO05D005511 4.6e-36 155.6 252 41.3
MBI13_g09206_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D005511 4.6e-36 155.6 258 41.1
Aqoxy2G00507 Aquilegia oxysepala HOM05D000515 ORTHO05D005511 1.0e-35 154.5 252 38.9
Duzib128G1588 Durio zibethinus HOM05D000515 ORTHO05D005511 1.3e-35 154.1 252 42.9
Oeu005219.1 Olea europaea HOM05D000515 ORTHO05D005511 1.7e-35 153.7 252 42.1
Atru.chr1.1382 Acer truncatum HOM05D000515 ORTHO05D005511 3.0e-35 152.9 252 41.7
Gorai.013G001200 Gossypium raimondii HOM05D000515 ORTHO05D005511 6.6e-35 151.8 252 41.3
Sabra06G0023900 Salix brachista HOM05D000515 ORTHO05D005511 1.1e-34 151.0 246 42.3
Manes.09G002900 Manihot esculenta HOM05D000515 ORTHO05D005511 1.9e-34 150.2 252 39.7
TWI74G0167 Tripterygium wilfordii HOM05D000515 ORTHO05D005511 1.9e-34 150.2 252 40.1
Ciclev10011059m.g Citrus clementina HOM05D000515 ORTHO05D005511 4.3e-34 149.1 252 40.9
Gohir.A13G001900 Gossypium hirsutum HOM05D000515 ORTHO05D005511 2.1e-33 146.7 252 40.9
Nn7g36906 Nelumbo nucifera HOM05D000515 ORTHO05D005511 2.1e-33 146.7 252 39.3
Potri.006G035700 Populus trichocarpa HOM05D000515 ORTHO05D005511 2.1e-33 146.7 252 40.9
Thecc.05G121100 Theobroma cacao HOM05D000515 ORTHO05D005511 2.1e-33 146.7 252 40.5
CAN.G489.3 Capsicum annuum HOM05D000515 ORTHO05D005511 2.8e-33 146.4 246 40.7
CANSAT64G0753 Cannabis sativa HOM05D000515 ORTHO05D005511 3.6e-33 146.0 252 40.9
Cfa019981 Carpinus fangiana HOM05D000515 ORTHO05D005511 6.2e-33 145.2 210 46.2
Hund24560 Selenicereus undatus HOM05D000515 ORTHO05D005511 6.2e-33 145.2 253 39.9
ECA248G3093 Erigeron canadensis HOM05D000515 ORTHO05D005511 1.4e-32 144.1 252 39.7
Nitab4.5_0010640g0010 Nicotiana tabacum HOM05D000515 ORTHO05D005511 3.1e-32 142.9 255 39.6
Nitab4.5_0000653g0130 Nicotiana tabacum HOM05D000515 ORTHO05D005511 4.0e-32 142.5 246 40.7
arahy.Tifrunner.gnm1.ann1.C6MU4Z Arachis hypogaea HOM05D000515 ORTHO05D005511 5.2e-32 142.1 219 41.1
Eucgr.H00628 Eucalyptus grandis HOM05D000515 ORTHO05D005511 8.9e-32 141.4 247 40.1
HanXRQChr13g0406691 Helianthus annuus HOM05D000515 ORTHO05D005511 8.9e-32 141.4 252 37.7
TPR.G16098 Trifolium pratense HOM05D000515 ORTHO05D005511 1.2e-31 141.0 246 39.4
Cc06_g19970 Coffea canephora HOM05D000515 ORTHO05D005511 1.5e-31 140.6 250 38.4
Migut.K00146 Erythranthe guttata HOM05D000515 ORTHO05D005511 3.4e-31 139.4 252 38.1
Peaxi162Scf00076g00328 Petunia axillaris HOM05D000515 ORTHO05D005511 3.4e-31 139.4 246 39.4
Lsat_1_v5_gn_7_61860 Lactuca sativa HOM05D000515 ORTHO05D005511 1.3e-30 137.5 267 37.8
Medtr7g089190 Medicago truncatula HOM05D000515 ORTHO05D005511 1.3e-30 137.5 256 38.3
PGSC0003DMG400008774 Solanum tuberosum HOM05D000515 ORTHO05D005511 1.7e-30 137.1 246 38.6
Solyc12g020110.2 Solanum lycopersicum HOM05D000515 ORTHO05D005511 2.9e-30 136.3 246 38.6
Sopen12g011610 Solanum pennellii HOM05D000515 ORTHO05D005511 2.9e-30 136.3 246 38.6
PGR142G1719 Punica granatum HOM05D000515 ORTHO05D005511 4.9e-30 135.6 250 36.4
EL10Ac3g07263 Beta vulgaris HOM05D000515 ORTHO05D005511 8.3e-30 134.8 252 39.7
Rhsim04G0113800 Rhododendron simsii HOM05D000515 ORTHO05D005511 8.3e-30 134.8 351 32.2
SGA_v2.0_scaffold106G30530 Striga asiatica HOM05D000515 ORTHO05D005511 1.1e-29 134.4 254 38.2
PSO339G0711 Papaver somniferum HOM05D000515 ORTHO05D005511 1.4e-29 134.0 218 40.4
AUR62018374 Chenopodium quinoa HOM05D000515 ORTHO05D005511 3.2e-29 132.9 247 39.7
Sc19g0008090 Simmondsia chinensis HOM05D000515 ORTHO05D005511 3.2e-29 132.9 251 34.7
COL.COLO4_07034 Corchorus olitorius HOM05D000515 ORTHO05D005511 4.1e-29 132.5 265 36.2
TAR623G0628 Trochodendron aralioides HOM05D000515 ORTHO05D005511 5.4e-29 132.1 114 61.4
Prupe.7G029000 Prunus persica HOM05D000515 ORTHO05D005511 7.1e-29 131.7 277 36.5
AUR62030288 Chenopodium quinoa HOM05D000515 ORTHO05D005511 1.2e-28 131.0 248 39.5
DCAR_009131 Daucus carota HOM05D000515 ORTHO05D005511 1.2e-28 131.0 246 36.2
HPP92_001142 Vanilla planifolia HOM05D000515 ORTHO05D005511 1.6e-28 130.6 252 38.1
MSTRG.26167 Avicennia marina HOM05D000515 ORTHO05D005511 3.5e-28 129.4 252 35.7
Ca_27817_v3 Cicer arietinum L. HOM05D000515 ORTHO05D005511 3.5e-28 129.4 279 35.1
Dinv21481 Davidia involucrata HOM05D000515 ORTHO05D005511 3.5e-28 129.4 114 60.5
DCAR_009135 Daucus carota HOM05D000515 ORTHO05D005511 4.6e-28 129.0 246 35.8
arahy.Tifrunner.gnm1.ann1.1JC5TC Arachis hypogaea HOM05D000515 ORTHO05D005511 7.8e-28 128.3 229 37.1
Glyma.03G124900 Glycine max HOM05D000515 ORTHO05D005511 7.8e-28 128.3 250 35.2
Eucgr.K01651 Eucalyptus grandis HOM05D000515 ORTHO05D005511 1.0e-27 127.9 175 46.9
AUR62030289 Chenopodium quinoa HOM05D000515 ORTHO05D005511 1.7e-27 127.1 245 39.2
Lj1g0003942 Lotus japonicus HOM05D000515 ORTHO05D005511 1.7e-27 127.1 254 36.2
MBI13_g46380_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D005511 1.7e-27 127.1 166 46.4
AUR62018373 Chenopodium quinoa HOM05D000515 ORTHO05D005511 2.3e-27 126.7 247 38.1
Ah.04g150800 Amaranthus hybridus HOM05D000515 ORTHO05D005511 3.9e-27 125.9 255 37.6
MD00G1160000 Malus domestica HOM05D000515 ORTHO05D005511 6.6e-27 125.2 114 59.6
PSO384G3808 Papaver somniferum HOM05D000515 ORTHO05D005511 1.1e-26 124.4 244 36.1
TAR623G1309 Trochodendron aralioides HOM05D000515 ORTHO05D005511 1.1e-26 124.4 256 37.9
CDE08G0661 Ceratophyllum demersum HOM05D000515 ORTHO05D005511 2.5e-26 123.2 246 34.6
Os07g0642400 Oryza sativa ssp. japonica HOM05D000515 ORTHO05D005511 3.3e-26 122.9 252 36.1
RcHm_v2.0_Chr7g0222151 Rosa chinensis HOM05D000515 ORTHO05D005511 1.6e-25 120.6 109 60.6
Phvul.001G120300 Phaseolus vulgaris HOM05D000515 ORTHO05D005511 3.1e-24 116.3 263 33.5
QL07p012138 Quercus lobata HOM05D000515 ORTHO05D005511 6.8e-24 115.2 115 56.5
VMungo1383G0097 Vigna mungo HOM05D000515 ORTHO05D005511 2.6e-23 113.2 282 30.5
HPP92_001116 Vanilla planifolia HOM05D000515 ORTHO05D005511 3.4e-23 112.8 120 52.5
DCAR_020591 Daucus carota HOM05D000515 ORTHO05D005511 7.6e-23 111.7 114 51.8
Eucgr.K01656 Eucalyptus grandis HOM05D000515 ORTHO05D005511 2.2e-22 110.2 178 43.8
unitig_899.g15089 Utricularia gibba HOM05D000515 ORTHO05D005511 2.9e-22 109.8 189 40.2
PSO017G7302 Papaver somniferum HOM05D000515 ORTHO05D005511 4.9e-22 109.0 246 32.9
Gohir.D13G001300 Gossypium hirsutum HOM05D000515 ORTHO05D005511 8.3e-22 108.2 217 36.4
arahy.Tifrunner.gnm1.ann1.WT7LXE Arachis hypogaea HOM05D000515 ORTHO05D005511 3.2e-21 106.3 115 47.0
SEGI_29164 Sequoiadendron giganteum HOM05D000515 ORTHO05D005511 4.1e-21 105.9 258 33.7
SMO169G0179 Selaginella moellendorffii HOM05D000515 ORTHO05D005511 9.2e-21 104.8 249 30.1
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 2.1e-20 103.6 247 32.0
DCAR_010224 Daucus carota HOM05D000515 ORTHO05D005511 2.7e-20 103.2 109 51.4
Potri.016G033600 Populus trichocarpa HOM05D000515 ORTHO05D005511 1.1e-18 97.8 255 33.7
SMO203G0195 Selaginella moellendorffii HOM05D000515 ORTHO05D005511 4.3e-18 95.9 259 28.6
AagrBONN_evm.TU.Sc2ySwM_344.3828 Anthoceros agrestis HOM05D000515 ORTHO05D005511 5.6e-18 95.5 264 29.9
Potri.016G033800 Populus trichocarpa HOM05D000515 ORTHO05D005511 9.6e-18 94.7 105 49.5
Pp3c24_8230 Physcomitrium patens HOM05D000515 ORTHO05D005511 1.6e-17 94.0 257 29.6
Sabra16G0036600 Salix brachista HOM05D000515 ORTHO05D005511 1.6e-17 94.0 256 31.2
Potri.016G033700 Populus trichocarpa HOM05D000515 ORTHO05D005511 2.8e-17 93.2 249 33.7
arahy.Tifrunner.gnm1.ann1.YS7E3I Arachis hypogaea HOM05D000515 ORTHO05D005511 4.7e-17 92.4 100 48.0
Potri.016G034000 Populus trichocarpa HOM05D000515 ORTHO05D005511 8.1e-17 91.7 249 32.1
SHI52066 Sapria himalayana HOM05D000515 ORTHO05D005511 3.1e-16 89.7 113 47.8
ATR0307G015 Amborella trichopoda HOM05D000515 ORTHO05D005511 1.2e-15 87.8 111 47.7
Sabra16G0054300 Salix brachista HOM05D000515 ORTHO05D005511 1.7e-14 84.0 211 33.2
Sabra16G0036700 Salix brachista HOM05D000515 ORTHO05D005511 2.9e-14 83.2 211 34.1
BcaC03g17815 Brassica carinata HOM05D000515 ORTHO05D014925 8.4e-14 81.6 48 79.2
C02p58380 Brassica napus HOM05D000515 ORTHO05D014925 8.4e-14 81.6 48 79.2
BolC5t31208H Brassica oleracea HOM05D000515 ORTHO05D014925 1.4e-13 80.9 48 77.1
C02p56530 Brassica napus HOM05D000515 ORTHO05D005511 1.9e-13 80.5 48 79.2
BcaC05g26431 Brassica carinata HOM05D000515 ORTHO05D005511 2.4e-13 80.1 48 77.1
PSO675G3362 Papaver somniferum HOM05D000515 ORTHO05D005511 2.1e-12 77.0 102 46.1
Zm00001eb329060 Zea mays HOM05D000515 ORTHO05D005511 6.0e-12 75.5 250 27.2
C09p72020 Brassica napus HOM05D000515 ORTHO05D005511 7.8e-12 75.1 44 81.8
MD00G1159900 Malus domestica HOM05D000515 ORTHO05D005511 7.8e-12 75.1 48 75.0
DCAR_009132 Daucus carota HOM05D000515 ORTHO05D005511 1.0e-11 74.7 55 67.3
DCAR_009133 Daucus carota HOM05D000515 ORTHO05D005511 1.0e-11 74.7 55 67.3
Sabra16G0054400 Salix brachista HOM05D000515 ORTHO05D005511 3.9e-11 72.8 231 33.3
Sc19g0008080 Simmondsia chinensis HOM05D000515 ORTHO05D005511 8.7e-11 71.6 173 28.9
GSVIVG01025773001 Vitis vinifera HOM05D000515 ORTHO05D005511 3.3e-10 69.7 48 66.7
EL10Ac9g20804 Beta vulgaris HOM05D000515 ORTHO05D014925 5.3e-08 62.4 47 63.8
Lalb_Chr22g0357741 Lupinus albus HOM05D000515 ORTHO05D005511 2.6e-07 60.1 48 60.4
Psat3g080400 Pisum sativum HOM05D000515 ORTHO05D005511 2.6e-07 60.1 48 56.2
Gorai.006G248800 Gossypium raimondii HOM05D000515 ORTHO05D003188 7.6e-07 58.5 108 38.0
Lj1g0011417 Lotus japonicus HOM05D000515 ORTHO05D005511 7.6e-07 58.5 139 31.7
CBR_g31382 Chara braunii HOM05D000515 ORTHO05D003188 1.3e-06 57.8 124 35.5
Aa31LG5G3650 Aethionema arabicum HOM05D000515 ORTHO05D003188 2.2e-06 57.0 108 35.2
Carub.0008s0509 Capsella rubella HOM05D000515 ORTHO05D003188 2.2e-06 57.0 108 36.1
Gohir.D09G226900 Gossypium hirsutum HOM05D000515 ORTHO05D003188 2.2e-06 57.0 108 37.0
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 2.9e-06 56.6 109 33.9
ATR0307G017 Amborella trichopoda HOM05D000515 ORTHO05D005511 3.8e-06 56.2 52 57.7
Actinidia40072 Actinidia chinensis HOM05D000515 ORTHO05D003188 4.9e-06 55.8 112 35.7
COL.COLO4_15829 Corchorus olitorius HOM05D000515 ORTHO05D003188 4.9e-06 55.8 108 34.3
Eucgr.H03138 Eucalyptus grandis HOM05D000515 ORTHO05D003188 4.9e-06 55.8 108 35.2
Cfa008350 Carpinus fangiana HOM05D000515 ORTHO05D003188 6.4e-06 55.5 109 34.9
Duzib212G0273 Durio zibethinus HOM05D000515 ORTHO05D003188 6.4e-06 55.5 109 34.9
Thecc.04G250100 Theobroma cacao HOM05D000515 ORTHO05D003188 6.4e-06 55.5 108 36.1
CARHR180100 Cardamine hirsuta HOM05D000515 ORTHO05D003188 8.4e-06 55.1 108 35.2
FvH4_4g03180 Fragaria vesca HOM05D000515 ORTHO05D003188 8.4e-06 55.1 108 34.3
FAN12G3454 Fragaria x ananassa HOM05D000515 ORTHO05D003188 8.4e-06 55.1 108 34.3
PSO675G0141 Papaver somniferum HOM05D000515 ORTHO05D014925 8.4e-06 55.1 61 45.9
Prupe.1G034800 Prunus persica HOM05D000515 ORTHO05D003188 8.4e-06 55.1 107 38.3


User provided reference genes

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