Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1178.3 598 100.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1131.7 603 95.4
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 0.0e+00 1130.5 603 95.9
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 0.0e+00 1130.5 603 95.7
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 0.0e+00 1129.0 603 95.7
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 0.0e+00 1120.5 603 94.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 4.9e-311 1070.5 603 90.9
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.8e-308 1060.8 606 89.8
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.1e-298 1028.5 604 86.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.7e-298 1028.1 603 87.2
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 5.1e-297 1023.8 605 86.6
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.6e-293 1011.5 605 85.3
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 4.0e-273 944.5 611 80.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 4.7e-250 867.8 615 72.4
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 3.6e-242 841.6 608 70.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.5e-235 819.7 613 66.6
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.2e-234 816.6 612 66.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.8e-233 812.8 622 66.1
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 4.0e-233 811.6 615 67.5
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 4.0e-233 811.6 621 65.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.5e-232 809.7 612 66.2
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 9.8e-232 807.0 614 66.9
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 9.8e-232 807.0 612 66.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.2e-231 805.8 614 67.3
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.2e-231 805.8 614 67.3
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.2e-231 805.8 613 66.2
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.2e-231 805.8 616 66.4
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 6.4e-231 804.3 608 67.1
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 6.4e-231 804.3 614 67.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 8.3e-231 803.9 612 64.9
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.1e-230 803.5 615 66.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.1e-230 803.5 613 65.3
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.9e-230 802.7 614 67.1
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 3.2e-230 802.0 613 65.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.2e-230 802.0 612 66.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.2e-230 802.0 616 64.9
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 5.4e-230 801.2 613 66.1
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.2e-229 800.0 613 65.6
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.2e-229 800.0 614 66.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.7e-229 798.9 617 66.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 7.8e-229 797.3 613 65.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.3e-228 796.6 612 65.4
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.3e-228 795.8 609 66.7
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 3.0e-228 795.4 612 66.0
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 4.3e-227 791.6 612 65.7
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.6e-226 789.6 619 64.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-226 789.6 617 64.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 6.2e-226 787.7 615 63.6
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 8.1e-226 787.3 620 63.9
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.4e-225 786.6 609 64.9
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.8e-225 786.2 615 64.1
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 6.8e-225 784.3 615 65.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 5.8e-224 781.2 620 63.5
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.9e-223 778.9 625 64.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 8.4e-223 777.3 614 65.3
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 8.4e-223 777.3 615 65.2
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 7.1e-222 774.2 617 64.7
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 6.0e-221 771.2 613 63.8
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 7.8e-221 770.8 618 63.4
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.3e-220 770.0 601 63.9
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 5.1e-220 768.1 609 64.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.6e-218 763.1 613 63.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.8e-218 762.3 616 62.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.6e-218 761.9 612 63.6
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 5.2e-217 758.1 595 64.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.8e-217 757.7 690 58.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.2e-216 756.9 603 63.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 7.6e-216 754.2 606 63.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 9.9e-216 753.8 606 62.5
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 9.9e-216 753.8 615 62.1
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.7e-215 753.1 615 62.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.9e-214 749.6 569 65.7
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.2e-214 748.4 563 65.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 4.6e-213 745.0 597 62.6
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.8e-210 735.7 739 54.7
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 3.1e-209 732.3 612 60.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.2e-208 730.3 602 62.6
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.0e-208 729.6 612 60.6
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 4.6e-205 718.4 608 61.2
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.0e-204 717.2 607 61.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.0e-204 715.7 573 62.1
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.9e-203 713.0 546 65.6
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 4.3e-203 711.8 607 60.0
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.8e-202 708.4 547 64.2
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 8.1e-202 707.6 573 64.9
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.6e-200 702.6 588 61.4
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.8e-188 663.3 610 57.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 7.6e-184 647.9 615 55.0
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.5e-176 622.1 501 63.3
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 6.7e-172 608.2 604 55.3
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.1e-171 607.4 617 52.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.2e-167 593.2 686 47.8
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.7e-159 567.0 527 56.4
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.1e-153 544.7 686 47.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 8.5e-143 511.5 495 54.5
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 8.5e-143 511.5 489 56.9
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.6e-133 480.7 386 63.5
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-132 476.9 387 62.0
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.9e-130 469.9 359 64.6
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 2.1e-117 427.2 429 54.8
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.8e-116 424.1 361 61.8
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 5.2e-108 396.0 364 58.2
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.1e-102 378.3 642 38.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-100 370.2 395 51.4
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 4.0e-100 369.8 258 69.0
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 4.0e-100 369.8 322 60.2
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 3.4e-99 366.7 258 69.4
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.4e-92 344.0 257 66.5
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 4.0e-92 343.2 245 68.2
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.5e-83 314.7 232 66.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 9.3e-81 305.4 630 34.3
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 5.5e-73 279.6 179 72.1
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-51 207.6 221 52.9
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 8.5e-50 202.6 235 51.1
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 9.7e-46 189.1 159 59.1
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.6e-43 181.8 159 57.9
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 9.4e-41 172.6 104 78.8
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.6e-40 171.8 112 72.3
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-40 171.0 109 74.3
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-38 164.9 112 69.6
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 3.3e-38 164.1 111 69.4
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 8.2e-37 159.5 112 67.9
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 7.0e-36 156.4 81 92.6
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 7.0e-36 156.4 81 92.6
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 9.1e-36 156.0 104 70.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 7.5e-30 136.3 115 60.0
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-27 128.3 100 62.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 5.9e-27 126.7 82 74.4
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 7.7e-27 126.3 87 69.0
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-24 119.0 72 79.2
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-24 117.9 131 50.4
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 3.6e-24 117.5 502 24.1
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-21 109.0 68 72.1
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.4e-20 105.5 150 43.3
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-19 100.9 120 50.0
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-18 99.4 55 78.2
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-18 99.4 66 69.7
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.2e-16 92.4 83 53.0
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-12 78.6 55 70.9
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.6e-11 75.5 182 29.1
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.6e-11 75.5 182 28.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.0e-11 75.1 182 29.1
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-10 72.4 41 73.2
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.7e-10 72.0 146 37.7
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-09 67.8 40 72.5
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 5.6e-09 67.0 202 26.2
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 7.3e-09 66.6 185 27.6
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-08 65.9 47 63.8
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.2e-08 65.9 41 68.3
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.8e-08 64.7 41 68.3
BolC5t30574H Brassica oleracea HOM05D002136 ORTHO05D005956 8.0e-08 63.2 38 76.3
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.4e-07 62.4 183 23.5
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.6e-06 58.2 45 64.4


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